BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13520.1
Length=516
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478739 jgi|Araly1|478739|fgenesh2_kg.3__1440__AT3G13520.1 773 0.0
> Ahg478739 jgi|Araly1|478739|fgenesh2_kg.3__1440__AT3G13520.1
Length=524
Score = 773 bits (418), Expect = 0.0
Identities = 495/529 (94%), Gaps = 18/529 (3%)
Strand=Plus/Plus
Query 1 ATTTTATAGAGACGTCTCTGGAAAAAACATTCCCAAA-ATTGGCTTATAAATA-C-TTTC 57
|||||||||||||||||||||||| ||| |||||||| |||||||||||||| | ||||
Sbjct 1 ATTTTATAGAGACGTCTCTGGAAACAACTTTCCCAAACTTTGGCTTATAAATACCATTTC 60
Query 58 AAAACCACAAGG-C-C-ACAACTCATCATTCGCACCAAAGAGAAGAACAAAACATCATCA 114
| |||||||||| | | ||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 61 ATAACCACAAGGCCACAACAACTCATTATTCGCACCAAAGAGAAGAATAAAACCTCATCA 120
Query 115 TATATTCTATTGACTAGATTAATTTCTTCTAAGTGCAAA-AGAGGAGAAATGGAGTCAAT 173
||| ||||||||||||| |||||||||||||| ||| ||||||||||||||||||||
Sbjct 121 TATCTTCTATTGACTAG----ATTTCTTCTAAGTG-AAACAGAGGAGAAATGGAGTCAAT 175
Query 174 GAAGATGAAGCTCATAGTGGTGTTGATGGTGGCTATTGTGGCTTTCTCCGCCGTAGGAAA 233
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GAACATGAAGCTCATGGTGGTGTTGATGGTGGCTATTGTGGCTTTCTCCGCCGTAGGAAA 235
Query 234 CGTGGCTGCGCAGACAGAGGCTCCGGCTCCAAGTCCTACTTCCGATGCTGCTATGTTTGT 293
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 236 CGTGGCTGCGCAGACAGAGGCTCCGGCTCCAAGTCCTACTTCCGATGCTGCCATGTTTGT 295
Query 294 CCCGGCATTGTTTGCATCTGTTGCTGCTTTGGCATCAGGGTTTCTCTTCTAAACCAATCT 353
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 296 CCCGGCATTGTTTGCATCTGTTGCTGCTTTGGTATCAGGGTTTCTCTTCTAAACCAATCT 355
Query 354 CCACATTTCATTGAGTTAGGTTCTAAATTGTTTTGCCTTTTACTTTCGTTTATGTCTTAT 413
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 356 CCACATTTCATTGAGTTAGGTTCTAAATTGTTTTCCCTTTTACTTTGGTTTATGTCTTAT 415
Query 414 GGCATGAGCTTTTTGTTATTTGTTTCTAATATTTGGACTACTATGT----GTT--GTGTG 467
|||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||
Sbjct 416 GGCATGAGCTATTTGTTATTTGTTTCTAATATTTGGACTACTATATTATAGTTCTGTGTG 475
Query 468 TATATGATTCATAATTAATACTATATTTATGGATTGATTTCTTTCTATC 516
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TATATGATTCATAATTAATACTATATTTATGGATTGATTTCTTTCTATC 524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18772549788
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5