BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13540.1 Length=1074 Score E Sequences producing significant alignments: (Bits) Value Ahg929099 jgi|Araly1|929099|scaffold_301556.1 1223 0.0 > Ahg929099 jgi|Araly1|929099|scaffold_301556.1 Length=809 Score = 1223 bits (662), Expect = 0.0 Identities = 765/814 (94%), Gaps = 10/814 (1%) Strand=Plus/Plus Query 47 CTTTGTTGAAGACGGCGGAGATGATGTCATGTGGTGGGAAGAAGCCAGTGTCTAAGAAAA 106 |||||||||||||||||||||||||||||||||||| |||||| || || || ||||||| Sbjct 1 CTTTGTTGAAGACGGCGGAGATGATGTCATGTGGTGTGAAGAAACCTGTTTCGAAGAAAA 60 Query 107 CAACGCCGTGTTGCACGAAGATGGGGATGAAGAGAGGACCATGGACGGTGGAGGAAGACG 166 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 61 CAACGCCGTGTTGCACGAAGATGGGGATGAAGAGAGGACCATGGACGGTGGAGGAGGACG 120 Query 167 AGATTCTTGTGAGCTTCATTAAGAAAGAAGGTGAAGGACGGTGGCGATCGCTTCCTAAGA 226 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGATTCTTGTGAGCTTCATAAAGAAAGAAGGTGAAGGACGGTGGCGATCGCTTCCTAAGA 180 Query 227 GAGCTGGTTTACTCAGATGTGGAAAGAGCTGTCGTCTACGGTGGATGAACTATCTCCGAC 286 |||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 181 GAGCTGGTTTACTCCGATGTGGAAAGAGCTGCCGTCTTCGGTGGATGAACTATCTCCGAC 240 Query 287 CCTCGGTTAAACGTGGAGGAATTACGTCGGACGAGGAAGATCTCATCCTCCGTCTTCACC 346 | ||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 241 CGTCGGTTAAACGCGGCGGAATTACGTCGGACGAGGAAGATCTCATCCTCCGCCTTCACC 300 Query 347 GCCTCCTCGGCAACAGGTGGTCATTGATCGCGGGAAGGATACCGGGAAGGACTGATAATG 406 |||| || |||||| |||||||| ||||||| |||||||||||||||||||||||||| | Sbjct 301 GCCTTCTAGGCAACCGGTGGTCACTGATCGCTGGAAGGATACCGGGAAGGACTGATAACG 360 Query 407 AAATTAAGAACTATTGGAACACTCATCTTCGTAAGAAACTTTTAAGGCAAGGAATTGATC 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AAATTAAGAACTATTGGAACACTCATCTTCGTAAGAAACTTTTAAGGCAAGGAATTGATC 420 Query 467 CTCAAACCCACAAGCCTCTTGATGCAAACAACATCCAT-AAACCAGAAGAAGAAGTTTCC 525 |||||||||||||||||||||||||||||||| ||| | |||| ||| |||||||||||| Sbjct 421 CTCAAACCCACAAGCCTCTTGATGCAAACAACGTCC-TCAAACAAGATGAAGAAGTTTCC 479 Query 526 GGTGGACAAAAGTACCCTCTAGAGCCTATTTCTAGTTCTCATACTGATGATACCACTGTT 585 ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||| Sbjct 480 GGTGGACAAAAC--CCCA-TAGAGCCTATTTCTAGTTCTCATACCGATGATACCACCGTT 536 Query 586 AATGGCGGGGATGGAGATAGCAAGAACAGTATCAATGTCTTTGGTGGTGAACA-CGGCTA 644 ||| |||||||||||||||||||||||||||| |||||||||||||||||| | |||||| Sbjct 537 AATAGCGGGGATGGAGATAGCAAGAACAGTATTAATGTCTTTGGTGGTGAA-AGCGGCTA 595 Query 645 CGAAGACTTTGGTTTCTGCTACGACGACAAGTTCTCATCGTTTCTTAATTCGCTCATCAA 704 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 596 CGAAGACTTTGGTTTCTGCTACGACGACAAGTTCTCATCGTTTCTTAATTCGCTTATCAA 655 Query 705 CGATGTTGGTGATCCTTTTGGTAATATTATCCCAATATCTCAACCTTTGCAGATGGATGA 764 ||||| || ||||||||||||||| ||||| |||||||||||||| |||||||||||||| Sbjct 656 CGATGATGCTGATCCTTTTGGTAACATTATGCCAATATCTCAACCGTTGCAGATGGATGA 715 Query 765 TTGTAAGGATGGGATTGTTGGAGCGTCGTCTTCTAGCTTAGGACATGAC-T--AGATACA 821 ||||||||||| |||||||||||||||||| |||||||||||||||||| | ||| ||| Sbjct 716 TTGTAAGGATGAGATTGTTGGAGCGTCGTCATCTAGCTTAGGACATGACCTGCAGAGACA 775 Query 822 GGAAGATATATAGTTGATCGAATCTTGATGTCTT 855 ||||||||||||||||||||||||||||||||| Sbjct 776 AGAAGATATATAGTTGATCGAATCTTGATGTCTT 809 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39990939933 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5