BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13540.1
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929099 jgi|Araly1|929099|scaffold_301556.1 1223 0.0
> Ahg929099 jgi|Araly1|929099|scaffold_301556.1
Length=809
Score = 1223 bits (662), Expect = 0.0
Identities = 765/814 (94%), Gaps = 10/814 (1%)
Strand=Plus/Plus
Query 47 CTTTGTTGAAGACGGCGGAGATGATGTCATGTGGTGGGAAGAAGCCAGTGTCTAAGAAAA 106
|||||||||||||||||||||||||||||||||||| |||||| || || || |||||||
Sbjct 1 CTTTGTTGAAGACGGCGGAGATGATGTCATGTGGTGTGAAGAAACCTGTTTCGAAGAAAA 60
Query 107 CAACGCCGTGTTGCACGAAGATGGGGATGAAGAGAGGACCATGGACGGTGGAGGAAGACG 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 CAACGCCGTGTTGCACGAAGATGGGGATGAAGAGAGGACCATGGACGGTGGAGGAGGACG 120
Query 167 AGATTCTTGTGAGCTTCATTAAGAAAGAAGGTGAAGGACGGTGGCGATCGCTTCCTAAGA 226
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGATTCTTGTGAGCTTCATAAAGAAAGAAGGTGAAGGACGGTGGCGATCGCTTCCTAAGA 180
Query 227 GAGCTGGTTTACTCAGATGTGGAAAGAGCTGTCGTCTACGGTGGATGAACTATCTCCGAC 286
|||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 181 GAGCTGGTTTACTCCGATGTGGAAAGAGCTGCCGTCTTCGGTGGATGAACTATCTCCGAC 240
Query 287 CCTCGGTTAAACGTGGAGGAATTACGTCGGACGAGGAAGATCTCATCCTCCGTCTTCACC 346
| ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 CGTCGGTTAAACGCGGCGGAATTACGTCGGACGAGGAAGATCTCATCCTCCGCCTTCACC 300
Query 347 GCCTCCTCGGCAACAGGTGGTCATTGATCGCGGGAAGGATACCGGGAAGGACTGATAATG 406
|||| || |||||| |||||||| ||||||| |||||||||||||||||||||||||| |
Sbjct 301 GCCTTCTAGGCAACCGGTGGTCACTGATCGCTGGAAGGATACCGGGAAGGACTGATAACG 360
Query 407 AAATTAAGAACTATTGGAACACTCATCTTCGTAAGAAACTTTTAAGGCAAGGAATTGATC 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAATTAAGAACTATTGGAACACTCATCTTCGTAAGAAACTTTTAAGGCAAGGAATTGATC 420
Query 467 CTCAAACCCACAAGCCTCTTGATGCAAACAACATCCAT-AAACCAGAAGAAGAAGTTTCC 525
|||||||||||||||||||||||||||||||| ||| | |||| ||| ||||||||||||
Sbjct 421 CTCAAACCCACAAGCCTCTTGATGCAAACAACGTCC-TCAAACAAGATGAAGAAGTTTCC 479
Query 526 GGTGGACAAAAGTACCCTCTAGAGCCTATTTCTAGTTCTCATACTGATGATACCACTGTT 585
||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| |||
Sbjct 480 GGTGGACAAAAC--CCCA-TAGAGCCTATTTCTAGTTCTCATACCGATGATACCACCGTT 536
Query 586 AATGGCGGGGATGGAGATAGCAAGAACAGTATCAATGTCTTTGGTGGTGAACA-CGGCTA 644
||| |||||||||||||||||||||||||||| |||||||||||||||||| | ||||||
Sbjct 537 AATAGCGGGGATGGAGATAGCAAGAACAGTATTAATGTCTTTGGTGGTGAA-AGCGGCTA 595
Query 645 CGAAGACTTTGGTTTCTGCTACGACGACAAGTTCTCATCGTTTCTTAATTCGCTCATCAA 704
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 596 CGAAGACTTTGGTTTCTGCTACGACGACAAGTTCTCATCGTTTCTTAATTCGCTTATCAA 655
Query 705 CGATGTTGGTGATCCTTTTGGTAATATTATCCCAATATCTCAACCTTTGCAGATGGATGA 764
||||| || ||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 656 CGATGATGCTGATCCTTTTGGTAACATTATGCCAATATCTCAACCGTTGCAGATGGATGA 715
Query 765 TTGTAAGGATGGGATTGTTGGAGCGTCGTCTTCTAGCTTAGGACATGAC-T--AGATACA 821
||||||||||| |||||||||||||||||| |||||||||||||||||| | ||| |||
Sbjct 716 TTGTAAGGATGAGATTGTTGGAGCGTCGTCATCTAGCTTAGGACATGACCTGCAGAGACA 775
Query 822 GGAAGATATATAGTTGATCGAATCTTGATGTCTT 855
|||||||||||||||||||||||||||||||||
Sbjct 776 AGAAGATATATAGTTGATCGAATCTTGATGTCTT 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39990939933
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5