BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13550.1
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478742 jgi|Araly1|478742|fgenesh2_kg.3__1443__AT3G13550.1 1251 0.0
> Ahg478742 jgi|Araly1|478742|fgenesh2_kg.3__1443__AT3G13550.1
Length=799
Score = 1251 bits (677), Expect = 0.0
Identities = 760/800 (95%), Gaps = 6/800 (1%)
Strand=Plus/Plus
Query 58 AGAGTATCGGAAGACGACGACGACGGGAGATGATGACACCTGGCGGAAGCGGGAGGTTGA 117
|||| ||||||||| ||| ||||||||||||||||||||||||||||||||| || || |
Sbjct 1 AGAGAATCGGAAGAGGACAACGACGGGAGATGATGACACCTGGCGGAAGCGGAAGATTAA 60
Query 118 GACCGTTACCGACGGCGATGTACGCCGGATATTCAGGAACGGCGTCGTCTTGGGTAGCGA 177
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGCCGTTACCGACGGCGATGTACGCCGGATATTCAGGAACGGCGTCGTCTTGGGTAGCGA 120
Query 178 AGACTTCAGTTTCTGCGTCAGGGAAGAGGATACAGAGGGAGATGGCTGAGCTTAACATTG 237
|||||||||||||||| || |||||||||||||| || |||||||| ||||||||| |||
Sbjct 121 AGACTTCAGTTTCTGCTTCTGGGAAGAGGATACAAAGAGAGATGGCGGAGCTTAACGTTG 180
Query 238 ATCCACCTCCTGATTGCTCAGCTGGTCCAAAAGGAGATAATCTCTACCATTGGATCGCCA 297
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCCGCCTCCTGATTGCTCCGCTGGTCCAAAAGGAGATAATCTCTACCATTGGATCGCCA 240
Query 298 CCATCATTGGTCCTTCGGGAACTCCCTATGAAGGAGGGATCTTTTTCCTGGATATAATTT 357
||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||||
Sbjct 241 CCATCATTGGTCCTTCGGGAACTCCTTATGAAGGAGGAATCTTTTTTCTCGATATAATTT 300
Query 358 TCCCATCTGATTATCCATTCAAGCCACCTAAGTTGGTGTTCAAGACTCGGATTTACCATT 417
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCCCGTCTGATTATCCATTCAAGCCACCTAAGTTGGTGTTCAAGACTCGGATTTACCATT 360
Query 418 GCAATGTTGATACTGCGGGAGATTTAAGTGTGAACATTCTAAGAGATAGTTGGAGTCCAG 477
||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 361 GCAATGTCGATACTGCGGGGGATTTAAGTGTGGACATTCTAAGAGATAGTTGGAGTCCAG 420
Query 478 CCCTTACAATCACTAAAGTCTTACAAGCCATCAGATCTATCTTCTTAAAACCTGAACCCT 537
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCCTTACAATCACAAAAGTCTTACAAGCCATCAGATCTATCTTCTTAAAACCTGAACCCT 480
Query 538 ATAGTCCAGCTTTACCGGTGATTGCACGGCTCTACTTGACAGATAGAGAAAAGCATGACG 597
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 ATAGTCCAGCTTTACCAGTGATTGCACGGCTCTACTTGACAGATAGAGACAAGCATGACG 540
Query 598 AGGTAGCCAAAGAATGGACATTGCGATTTGCCAAGTGAGATCTTCAATACGAGGAAAAGA 657
||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 541 AGGTAGCCAAAGAATGGACTTTGCGATTTGCCAAGTGAGATTTTCGATACGAGGAAA-GA 599
Query 658 CAACTGATGTATTATAAATACACCTAGTTCTTTGGTTAGTTAATGGTCATCAATGTACAT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CAACTGATGTATTATAAATACACCTAGTTCTTTGGTTAGTTAATGGTCATCAATGTACAT 659
Query 718 TCATAAAAGTGGAACCACAATGTTAGATGGCCAAGAAA-A---TTGTTTGCTCAGATAAT 773
||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 660 CCATCAAAGTGGAACCACAATGTTAGATGGCCAAGAAAGAAAGTTGTTTGCTCAGATAAT 719
Query 774 AGGCAACAATGTGAGGTAGGACCAATCCTCAACAACTCC-AATTTATTGAAGGTTATACA 832
||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 720 AGGAAACAGTGTGAGGTAGGACCAATCCTCAACAACTCCCAATTTATTGAAGGTTACACA 779
Query 833 ATTTAGTGTCAAATCTTTTC 852
||||||||||||||||||||
Sbjct 780 ATTTAGTGTCAAATCTTTTC 799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31642021110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5