BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13560.1
Length=2119
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478745 jgi|Araly1|478745|fgenesh2_kg.3__1446__AT3G13560.3 2547 0.0
> Ahg478745 jgi|Araly1|478745|fgenesh2_kg.3__1446__AT3G13560.3
Length=1984
Score = 2547 bits (1379), Expect = 0.0
Identities = 1680/1819 (92%), Gaps = 46/1819 (3%)
Strand=Plus/Plus
Query 93 tttcttttccatttcctttcaatttcGACAAATAATATTCGCCGAAAGACAAGaaaaaaa 152
||| ||||||||||||||||||||||| ||||||| |||||||||||| ||| ||||||
Sbjct 61 TTT-TTTTCCATTTCCTTTCAATTTCG-TAAATAATTTTCGCCGAAAGAAAAG-AAAAAA 117
Query 153 aGTGTTTACTTTTTGGGTTCCTCTTCGGTGGGTTCACT----ACACTAGTAACATCTCTG 208
||| ||||||||||| | |||||| ||||||||||| ||||||||||||||||||
Sbjct 118 AGTCTTTACTTTTTGTG-ACCTCTT-TGTGGGTTCACTACACACACTAGTAACATCTCTG 175
Query 209 AACCTGT-TCTCTGTCTCTCAGCAGCAAAACCTCGAGGcttctttttctttcattctctc 267
||||||| | |||| |||||||||||||||||||||||||||||||| | | || |
Sbjct 176 AACCTGTGT-TCTG--TCTCAGCAGCAAAACCTCGAGGCTTCTTTTTC---C-TCCT-TG 227
Query 268 aatttcttctctc-tgatctgaattctcGCCGAGTGAATCTAG-A--AC-C--------- 313
||||||||||| | ||||||||| ||||||||| ||||||| | | || |
Sbjct 228 AATTTCTTCTC-CGTGATCTGAAATCTCGCCGACTGAATCTGGAACGACTCAATTTTTGT 286
Query 314 --AGGTTTAAGGTTTTCAAGCACTCTGTTTCCAATGCTGCTTCCGAGATGGTTTGCAGAA 371
|||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 287 GTAGGTTTTAGGTTTTCAAGCTCTCTG-TTCCAATGCTGCTTCCGAGATGGTTTGCAGAA 345
Query 372 GCGTTGTTGCTCCTACTTTCAATTCTTGCCTGTTCAAACGCTGCATTTATCGGTGTAAAC 431
||| | ||||||||||||||| ||||||| | |||||| ||||||| ||||||||| |||
Sbjct 346 GCGGTCTTGCTCCTACTTTCATTTCTTGCGTTTTCAAATGCTGCATATATCGGTGTGAAC 405
Query 432 ATTGGCACTGATCTCACCAACATGCCACCGCCTTCAGACATTGTAACACTTCTCAAATCA 491
||||| ||||||||||||||||||||| ||||||||||||| ||||| |||||| ||||
Sbjct 406 ATTGGAACTGATCTCACCAACATGCCATCGCCTTCAGACATCGTAACGCTTCTCCAATCG 465
Query 492 CAACAAATCACACACGTCCGTCTCTATGATGCTAATAGCCATATGCTCAAAGCATTTGCC 551
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 466 CAACAAATCACACACGTTCGTCTATATGATGCTAATAGCCACATGCTCAAAGCATTTGCC 525
Query 552 AACACTAGCATCGAAGTTATGGTCGGTGTAACCAATGAAGAAATCCTCAAAATCGGACGG 611
||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 526 AACACTAGCATCGAAGTTATGGTTGGTGTAACTAATGACGAAATCCTCAAAATCGGACGG 585
Query 612 TTTCCTTCAGCTGCAGCTGCTTGGGTTAACAAAAACGTCGCTGCTTATATTCCTTCAACT 671
||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 586 TTTCCTTCAGCTGCAGCCGCTTGGGTTAACAAGAACGTTGCTGCTTATATTCCTTCAACT 645
Query 672 AATATAACCGCCATTGCTGTTGGTAGTGAGGTTCTCACCACGATTCCTCACGTGGCGCCG 731
|| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 646 AACATAACCGCCATTGCTGTTGGTAGCGAAGTTCTCACCACCATTCCTCACGTGGCGCCG 705
Query 732 ATTCTCGCCTCTGCTCTTAACAACATTCACAAGGCTCTTGTGGCTTCCAATCTCAACTTT 791
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 706 ATTCTCGCCTCGGCTCTTAACAACATTCACAAGGCTCTTGTGGCTTCTAATCTCAACTTT 765
Query 792 AAGGTCAAAGTCTCCAGCCCTATGTCTATGGATATAATGCCTAAACCGTTTCCTCCATCT 851
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 AAGGTCAAAGTTTCCAGCCCTATGTCTATGGATATAATGCCTAAACCGTTTCCTCCATCT 825
Query 852 ACATCTACCTTTAGCCCGTCGTGGAACACCACGGTTTACCAGCTTCTTCAGTTTTTGAAG 911
||||| ||||||||||| |||||||| ||||||||||||||||| || |||||| |||||
Sbjct 826 ACATCGACCTTTAGCCCATCGTGGAATACCACGGTTTACCAGCTCCTCCAGTTTCTGAAG 885
Query 912 AACACTGGTTCCTTTTTCATGTTAAACGCGTATCCTTACTACGGTTACACAACCGCTAAT 971
||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 AACACCGGTTCTTTTTTTATGTTAAACGCGTATCCTTACTACGGTTACACAACCGCTAAT 945
Query 972 GGGATTTTCCCGCTTGATTACGCTTTGTTCAAGCAGCTTTCTCCGGTGAAGCAGATTGTT 1031
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 946 GGGATTTTCCCGCTAGATTACGCGTTGTTCAAGCAGCTTTCTCCGGTGAAGCAGATTGTT 1005
Query 1032 GATCCCAACACGCTTTTACATTACAACAGCATGTTTGATGCTATGGTTGATGCTGCTTAC 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 GATCCCAACACGCTTTTACATTACAACAGCATGTTTGATGCTATGGTTGATGCTGCTTAC 1065
Query 1092 TACTCCATGGAAGCTTTGAATTTCTCCAAGATTCCTGTTGTAGTCACGGAAACAGGCTGG 1151
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1066 TACTCCATGGAAGCTTTGAATTTCTCCAAGATTCCTGTTGTCGTCACGGAAACAGGCTGG 1125
Query 1152 CCTTCGTCTGGTGGAAGCGATGAAGCGGCTGCAACAGTCGCTAATGCGGAGACATTCAAC 1211
||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1126 CCTTCGTCTGGTGGAGGCGATGAAGCGGCTGCAACAGTCGCTAACGCAGAGACATTCAAC 1185
Query 1212 ACTAACTTGATCAAGAGAGTGCTGAACAACTCAGGTCCTCCTAGTCAACCAGACATACCG 1271
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1186 ACTAACTTGATCAAGAGAGTGTTGAACAACTCAGGTCCTCCTAGCCAACCAGACATACCG 1245
Query 1272 ATAAACACTTACATCTACGAGCTGTACAATGAAGACAAGCGGTCAGGACCAGTCTCTGAA 1331
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1246 ATAAACACTTACATCTACGAGCTGTACAATGAAGACAAGCGGTCCGGACCAGTCTCTGAA 1305
Query 1332 AGAAACTGGGGGATTTTGTTTCCAAATGGGACCTCGGTTTACCCTCTGAGTTTGAGTGGT 1391
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1306 AGAAACTGGGGAATTTTGTTTCCAAATGGGACCTCGGTTTACCCTCTGAGCTTGAGTGGT 1365
Query 1392 GGCTCTAGCTCCGCAGCTCTAAACGGTTCATCGATGTTCTGCGTGGCTAAAGCAGATGCT 1451
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1366 GGCTCTAACTCCGCAGCTCTAAACGATTCATCGATGTTCTGCGTGGCTAAAGCAGATGCT 1425
Query 1452 GATGATGATAAGTTGGTTGACGGTTTGAATTGGGCGTGTGGTCAAGGCCGAGCTAACTGC 1511
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 GACGATGATAAGTTGATTGACGGTTTGAATTGGGCGTGTGGTCAAGGCCGAGCTAACTGC 1485
Query 1512 GCTGCCATTCAACCGGGCCAACCTTGCTACCTCCCTAACGATGTTAAGAGCCATGCTTCT 1571
||||| |||||||| |||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 1486 GCTGCGATTCAACCTGGCCAACCTTGCTATCTCCCGAACGATGTAAAGAGCCATGCTTCT 1545
Query 1572 TTTGCTTTCAATGACTATTACCAGAAGATGAAAAGTGCAGGTGGAACTTGTGACTTTGAT 1631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 TTTGCTTTCAATGACTATTACCAGAAGATGAAAAGTGCAGGTGGAACTTGTGACTTTGAT 1605
Query 1632 GGTACGGCTATCACTACGACTAGAGATCCTAGCTATAGAACATGTGCATATACGGGAAGC 1691
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1606 GGTACGGCCATCACTACGACTAGAGATCCTAGCTATAGAACATGTGCATATACGGGAAGC 1665
Query 1692 TTAAACGCAAACGCTACTA-ATGGAAACTTTCCTCCGGATGCGTTAGGACCCGCAAGTCC 1750
|||||||||||| | || | |||| |||||||||| ||||||||||||||| ||||||
Sbjct 1666 TTAAACGCAAACTCAACGGGAGGGAA-CTTTCCTCCGAATGCGTTAGGACCCGTAAGTCC 1724
Query 1751 ATTGGGAGGAAACGCAAACGCACGTATCATCTTTAGCTACCATCTTCCCATATTGGCACC 1810
|||||||||||| |||||||||| |||||||| |||||||||| ||||| ||||||||||
Sbjct 1725 ATTGGGAGGAAATGCAAACGCACTTATCATCTCTAGCTACCATATTCCCTTATTGGCACC 1784
Query 1811 GTTAGCTCTCACTCTACTACAACTGTTGCTTCAGCA-TGACCGCCTTTTGTAGAACGTTT 1869
||| |||||||| || |||| ||||| |||||||| |||||||||||||| ||
Sbjct 1785 GTTGGCTCTCACGCTGTTACAGCTGTTACTTCAGCACTGACCGCCTTTTGT------TT- 1837
Query 1870 GCCAAAAAGCGGTTTTGTA 1888
||||||| |||||||||||
Sbjct 1838 GCCAAAACGCGGTTTTGTA 1856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79722882785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5