BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13570.1
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478747 jgi|Araly1|478747|fgenesh2_kg.3__1448__AT3G13570.1 1615 0.0
> Ahg478747 jgi|Araly1|478747|fgenesh2_kg.3__1448__AT3G13570.1
Length=1037
Score = 1615 bits (874), Expect = 0.0
Identities = 990/1044 (95%), Gaps = 15/1044 (1%)
Strand=Plus/Plus
Query 170 GTCTAGACACAATGAGAGGAAGGAGCTACACGCCATCACCACCAAGGGGTTATGGAAGGA 229
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCTAGACACAATGAGGGGAAGGAGCTACACGCCATCACCACCAAGGGGTTATGGAAGGA 60
Query 230 GGGGCCGGAGCCCTAGCCCTCGGGGCCGGTTTGGTGGGAGTCGTGACAGTGATCTCCCAA 289
||||||||||||||||||| ||||| || | |||||||||||||||||| ||||||||||
Sbjct 61 GGGGCCGGAGCCCTAGCCCCCGGGGTCGATATGGTGGGAGTCGTGACAGGGATCTCCCAA 120
Query 290 CCAGTCTCTTGGTTCGCAACTTACGTCATGATTGCAGGCAAGAAGACCTCAGGAGGCCAT 349
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCAGTCTTTTGGTTCGCAACCTACGTCATGATTGCAGGCAAGAAGACCTCAGGAGGCCAT 180
Query 350 TTGAGCAGTTTGGTCCCGTCAAGGACATCTACCTTCCTAGGGATTACTATACTGGAGATC 409
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 TTGAGCAGTTTGGTCCTGTCAAGGACATCTACCTTCCAAGGGATTACTATACTGGAGATC 240
Query 410 CAAGGGGGTTTGGATTCATTCAGTTTATGGATCCTGCTGATGCTGCTGAGGCTAAACATC 469
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 241 CAAGGGGGTTTGGATTCATTCAGTATGTGGATCCTGCTGATGCTGCTGAGGCTAAACATC 300
Query 470 AAATGGATGGTTATCTTCTTCTTGGTCGTGAGTTGACTGTCGTATTTGCTGAAGAAAACC 529
| |||||||||| || ||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 301 ACATGGATGGTTCTCATCTACTTGGTCGTGAGTTGACCGTCGTATTTGCAGAAGAAAACC 360
Query 530 GGAAGAAGCCAACTGAGATGAGAACAAGGGATCGAGGTGGAAGGAGCAACAGATTCCAGG 589
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 361 GGAAGAAGCCAACTGAAATGAGAACAAGGGATCGAGGTGGAAGGAGCAACAGATTCAACG 420
Query 590 ACAGAAGACGTTCTCCTCCTCGGTACTCTCGGTCTCCTCCTCCTCGCCGTGGTCGTAGAT 649
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 421 ACAGAAGACGTTCTCCTCCTCGGTACTCTCGTTCTCCTCCCCCTCGCCGTGGTCGTAGAT 480
Query 650 CACGATCACGTAGCCGCGGCTATAATTCTCCTCCCGCTAAAAGACATCAATCTAGGTCTG 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CACGATCACGTAGCCGCGGCTATAATTCTCCTCCCGCTAAAAGACATCAATCTAGGTCTG 540
Query 710 TCTCACCTCAGGATAGACGATATGAGAAGGAGAGGTCATACTCTCGCTCACCACCCCATA 769
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 541 TCTCACCTCAGGATAGACGATACGAGAAGGAGAGGTCATACTCTCGCTCACCACCCCATA 600
Query 770 ATGGCTCAAGGGTTCGCAGTGGAAGTCCTGGGAGAGTGAAGAGCCACAGCAGAAGCCCAA 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATGGCTCAAGGGTTCGCAGTGGAAGTCCTGGGAGAGTGAAGAGCCACAGCAGAAGCCCAA 660
Query 830 GAAGAAGCGTGAGCCCAAGAAAAAACAGGAGCTACACGCCAGAACAAGCAAGGAGCCAAA 889
||||||||||||||||||||| ||||||||| |||||||| |||||||| ||||||||||
Sbjct 661 GAAGAAGCGTGAGCCCAAGAAGAAACAGGAGTTACACGCCTGAACAAGCCAGGAGCCAAA 720
Query 890 GCCCTGTCCCTAGGCAGAGCAGGAGCCCGACCCCAGTCCCTCGTGGAGCACAAAATGGAG 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCCCTGTCCCTAGGCAGAGCAGGAGCCCGACCCCAGTCCCTCGTGGAGCACAAAATGGAG 780
Query 950 ACCGTTCTCCAAGCCAGTGATTTATGATTACACCATATATCTCTCTACTCTTCAGTTTTT 1009
|||||||||||||||||||||| | | |||||| |||||||||||||||||||||||
Sbjct 781 ACCGTTCTCCAAGCCAGTGATT-AC--T--CACCATGTATCTCTCTACTCTTCAGTTTTT 835
Query 1010 CAGTCTTGTTCT--GTT-TG----ATCAGATATTTTGTTTGCCTC-AGATTGATATTTCC 1061
|||||||||| | ||| || ||||||||||||||||||||| |||||||||| |||
Sbjct 836 CAGTCTTGTTTTAAGTTCTGCTTTATCAGATATTTTGTTTGCCTCTAGATTGATATATCC 895
Query 1062 CTACTTAGACAGATATTTGTAGTGCTATTGGTATTTTGCTTTATGTTTGATCCATGGATG 1121
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 896 -TACTTAGACAGATCTTTGTAGTGCTATTGGTATTTTGCTTTATGTTGGATCCATGGATG 954
Query 1122 ATCTTGAGACAGTATTTTGAATTAGCATGTGTTATTTGTCATCTTATCTTTTTAGATCTC 1181
|||||||||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 955 ATCTTGAGACAGGATATTGAAGTAGCATGTGTTATTTGTCATCTTATCTTTT-AGATCTC 1013
Query 1182 ATCTAACATTGTTATGGTGAAAAA 1205
|||||||| ||||||| |||||||
Sbjct 1014 ATCTAACACTGTTATGTTGAAAAA 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46128729570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5