BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13580.3
Length=1569
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478749 jgi|Araly1|478749|fgenesh2_kg.3__1450__AT3G13580.2 1531 0.0
Ahg322471 jgi|Araly1|322471|fgenesh1_pm.C_scaffold_5000015 558 4e-158
Ahg497533 jgi|Araly1|497533|fgenesh2_kg.788__1__AT2G44120.1 532 2e-150
Ahg483534 jgi|Araly1|483534|fgenesh2_kg.4__2594__AT2G44120.2 527 1e-148
> Ahg478749 jgi|Araly1|478749|fgenesh2_kg.3__1450__AT3G13580.2
Length=1183
Score = 1531 bits (829), Expect = 0.0
Identities = 897/929 (97%), Gaps = 7/929 (1%)
Strand=Plus/Plus
Query 630 TTTACAGAAATGACTGAAGCAGAGTCCAAGACTGTTGTTCCTGAGTCAGTGTTGAAGAAG 689
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 255 TTTACAGAAATGACTGAAGCAGAGTCCAAGACTGTTGTCCCTGAGTCAGTGTTGAAGAAG 314
Query 690 AGAAAGAGGGAGGAAGAATGGGCACTTGCCAAGAAACAGGAGCTTGAGGCTGCCAAAAAG 749
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 315 AGAAAGAGGGAGGAAGAATGGGCACTTGCCAAGAAACAGGAGCTTGAGGCTGCTAAAAAG 374
Query 750 CAGAATGCTGAGAAGAGGAAACTCATATTTAACCGGGCTAAACAGTACTCCAAGGAGTAC 809
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 375 CAGAATGCTGAGAAGAGGAAACTCATATTTAACCGGGCTAAGCAATACTCCAAGGAGTAC 434
Query 810 CAGGAGAAAGAAAGGGAATTAATCCAGCTGAAGCGTGAGGCAAAATTGAAAGGAGGCTTT 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 CAGGAGAAAGAAAGGGAATTAATCCAGCTGAAGCGTGAGGCAAAATTGAAAGGAGGCTTT 494
Query 870 TATGTTGACCCAGAAGCTAAACTGCTTTTCATTATCCGTATCCGTGGTATCAATGCCATT 929
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 495 TATGTTGACCCAGAAGCTAAACTGCTTTTCATCATCCGTATCCGTGGTATCAATGCCATT 554
Query 930 GACCCAAAGACAAAGAAGATTTTGCAACTTTTGCGTTTAAGACAGATTTTCAATGGTGTG 989
||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 555 GACCCGAAGACAAAGAAGATTTTGCAGCTTTTGCGTCTAAGACAGATTTTCAATGGTGTG 614
Query 990 TTCTTGAAGGTCAACAAGGCAACCATTAACATGCTTCGCCGTGTTGAACCCTATGTAACC 1049
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 615 TTCTTAAAGGTCAACAAGGCAACCATTAACATGCTTCGCCGTGTTGAACCCTATGTGACC 674
Query 1050 TATGGATACCCGAACTTAAAAAGTGTGAAGGAATTGATTTACAAACGAGGTTTTGGAAAG 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 TATGGATACCCGAACTTAAAAAGTGTGAAGGAATTGATTTACAAACGAGGTTTTGGAAAG 734
Query 1110 CTTAACCACCAGAGGACTGCCTTAACAGACAATTCTATTGTAGATCAGGGGCTAGGAAAG 1169
|||||||||||||||| |||||| ||||||||||| |||||||| ||||| ||||| |||
Sbjct 735 CTTAACCACCAGAGGATTGCCTTGACAGACAATTCCATTGTAGACCAGGGACTAGGGAAG 794
Query 1170 CATGGCATCATCTGCGTTGAGGATCTGATCCATGAGATCATGACGGTTGGGCCACATTTC 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 CATGGCATCATCTGCGTTGAGGATCTGATCCATGAGATCATGACGGTTGGGCCACATTTC 854
Query 1230 AAGGAAGCCAATAACTTTTTGTGGCCATTCCAGTTGAAGGCTCCATTGGGAGGGATGAAG 1289
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 855 AAGGAAGCCAACAACTTTTTGTGGCCATTCCAGTTGAAGGCGCCATTGGGAGGGATGAAG 914
Query 1290 AAGAAGAGGAACCATTACGTGGAAGGAGGAGATGCTGGAAACCGCGAGAACTTCATCAAC 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 AAGAAGAGGAACCATTACGTGGAAGGAGGAGATGCTGGAAACCGCGAGAACTTCATCAAC 974
Query 1350 GAGCTCGTTAGGAGAATGAACTGAAGCGTAAGCGTTATTGCTCTGAAACTCCCTAGGAAA 1409
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 975 GAGCTCGTTAGGAGAATGAACTGAAGCGTAAGCGTTTTTGCTCTGAAACTCCCTGGGAAA 1034
Query 1410 CGTTTTGCTATAGGTGGAAAACTTCTGTTCGCTTGCTTGTGTTGCCATTGAGGCGAAGTA 1469
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1035 CGTTTTGCTATAGGTGGAAAAGTTCTGTTCGCTTGCTTGTGTTGCCATTGAGGCGAAGGA 1094
Query 1470 AACATTTACGGTGAAAGACTT---T---GATATTTTAT-AAGTTTGAAATTGTAAGAACA 1522
|||||| |||||||||||||| | |||||||| | |||||||||||||| ||||||
Sbjct 1095 AACATTAACGGTGAAAGACTTGAATTTTGATATTTTCTTAAGTTTGAAATTGTTAGAACA 1154
Query 1523 CATCATTTATTTCCTTCCACATTACATCG 1551
|||||||||||||||||||||||||||||
Sbjct 1155 CATCATTTATTTCCTTCCACATTACATCG 1183
> Ahg322471 jgi|Araly1|322471|fgenesh1_pm.C_scaffold_5000015
Length=729
Score = 558 bits (302), Expect = 4e-158
Identities = 595/734 (81%), Gaps = 30/734 (4%)
Strand=Plus/Plus
Query 651 GAGTCCAAGACTGTTGTTCCTGAGTCAGTGTTGAAGAAGAGAAAGAGGGAGGAAGAATGG 710
||||| ||| ||| ||||| ||||| |||||||||||| | ||||| ||||||||||||
Sbjct 7 GAGTCAAAGGTTGTAGTTCCGGAGTCGGTGTTGAAGAAGCGGAAGAGAGAGGAAGAATGG 66
Query 711 GCACTT-GCCAAGAAACAGGA-GCTTGAGGCTGCCAAAAAGCAGAATGCTGAGAAGAGGA 768
|| || | ||||| ||| | || ||| || ||||| ||| |||| || ||||| ||||
Sbjct 67 GC-TTTGGAGAAGAAGCAGAATGC-TGAAGCCGCCAAGAAGAAGAACGCAGAGAACAGGA 124
Query 769 AACTCATATTTAACCGGGCTAAACAGTACTCCAAGGAGTA--CCAGGAGAAAGA-AAGGG 825
| || || || || | || | || ||||||||||| || || ||||| || || ||
Sbjct 125 AGCTTATCTTCAAAAGAGCCGAGCAATACTCCAAGGAATATGCC--GAGAAGGAGAA-GG 181
Query 826 AATTAATC-CAGCTGAAGCGTGAGG-CAAAATTGAAAGGAGGCTTT-TATGTTGACCCAG 882
| || ||| | | |||| || |||| ||| || || ||||| ||| ||||||||||| |
Sbjct 182 AGTTGATCTC-GTTGAAACGCGAGGCCAAGCTT-AAGGGAGG-TTTCTATGTTGACCCTG 238
Query 883 AAGCTAAACTGCTT-TTCATTATCCGTATCCGTGGTATCAATGCCATTGACCCAAAGACA 941
||||||| || ||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 239 AAGCTAAGCT-CTTGTTCATCATCCGTATCCGTGGTATCAATGCCATTGACCCTAAGACC 297
Query 942 AAGAAGATTTTGCAACTTTTGCGTTTAAGACAGATTTTCAATGGTGTGTTC-TTGAAGGT 1000
||||||||| | || ||||||||||| |||||||||||||||||||| ||| || ||| |
Sbjct 298 AAGAAGATTCTCCAGCTTTTGCGTTTGAGACAGATTTTCAATGGTGTTTTCCTTAAAG-T 356
Query 1001 CAACAAGGCAACCATTAACATGCTTCGCCGTGTTGAACCCTATGTAACCTATGGATACCC 1060
||||||||| || || |||||||||||||||||||| |||||||| || || ||||||||
Sbjct 357 CAACAAGGCTACAATGAACATGCTTCGCCGTGTTGAGCCCTATGTCACTTACGGATACCC 416
Query 1061 GAACTTAAAAAGTGTGAAGGAATTGATTTACAA-ACGAGGTTTTGGAAAGCTTAACCACC 1119
||||| || ||||| ||||||||||| ||||| | |||||| ||| ||||| |||||||
Sbjct 417 TAACTTGAAGAGTGTCAAGGAATTGATCTACAAGA-GAGGTTATGGCAAGCTAAACCACC 475
Query 1120 AGAGGACTGCCTTA-ACAGACAATTCTATTGTAGATCAGGGGCTAGGAAAGCATGGCATC 1178
||||| || ||| || ||||| ||||| || || |||| |||||||||||||| |||
Sbjct 476 AGAGGG-TGGCTTTGACTGACAACTCTATCGTTGAGCAGGCTCTAGGAAAGCATGGGATC 534
Query 1179 ATCTGCGTTGAGGATCTGATCCATGAGAT-CATGACGGTTGGGCCACATTTCAAGGAAGC 1237
|||||| ||||||| ||||||| ||||| | | || || || || ||||||||||||||
Sbjct 535 ATCTGCACTGAGGATTTGATCCACGAGATTC-TAACAGTAGGACCTCATTTCAAGGAAGC 593
Query 1238 CAATAACTTT-TTGTGGCCATTCCAGTTGAAGGCTCCAT-TGGGAGGGATGAAGAAGAAG 1295
|| ||||| || |||||||||||| | ||||| || | | || || | |||||||||
Sbjct 594 TAACAACTTCCTT-TGGCCATTCCAGCTCAAGGCACC-TCTCGGTGGCCTCAAGAAGAAG 651
Query 1296 AGGAACCATTACGTGGAAGGAGGAGATGCTGGAAACCGCGAGAACTTCATCAACGAGCTC 1355
|| || || ||||||||||| || |||||||||||||| |||||||||||||| |||||
Sbjct 652 AGAAATCACTACGTGGAAGGTGGTGATGCTGGAAACCGTGAGAACTTCATCAATGAGCTT 711
Query 1356 GTTAGGAGAATGAA 1369
|| ||||| |||||
Sbjct 712 GTCAGGAGGATGAA 725
> Ahg497533 jgi|Araly1|497533|fgenesh2_kg.788__1__AT2G44120.1
Length=949
Score = 532 bits (288), Expect = 2e-150
Identities = 577/715 (81%), Gaps = 26/715 (4%)
Strand=Plus/Plus
Query 672 GAGTCAGTGTTGAAGAAGAGAAAGAGGGAGGAAGAATGGGCACTT-GCCAAGAAACAGG- 729
||||| || || || |||| |||||| | || ||||||||| || ||||||||| |||
Sbjct 150 GAGTCTGTATTAAAAAAGATCAAGAGGCAAGAGGAATGGGCA-TTGGCCAAGAAAGAGGA 208
Query 730 AGCTTGAGGCTGCCAAAAAGCAGAATGCTGAGAAGAGGAAACTCATATTTAACCGGGCTA 789
| | || ||||| || ||| ||| || ||||| | || ||||| || || | |||
Sbjct 209 AAC-TGTTGCTGCTAAGAAGAAGAGTGTTGAGACCCGCAAGCTCATCTTCAAGAGAGCTG 267
Query 790 AACAGTACT-CCAAGGAGTAC-CAGGAGAAAGA-AAGGGAATTAATCCAG-CTGAAGCGT 845
| ||||| | |||| || ||| | ||||| || || || || |||| | |||| |
Sbjct 268 AGCAGTA-TGCCAAAGAATACGC-TGAGAAGGATAA-TGAGTTGATCC-GATTGAAAAGG 323
Query 846 GAGGCAAAATTGAAAGGAGGCTTTTATGTTGACCCAGAAGCTAAACTGCT-TTTCATTAT 904
||||| || ||||||||||| || |||||||| ||||| || ||| |||| ||| || ||
Sbjct 324 GAGGCTAAGTTGAAAGGAGGGTTCTATGTTGATCCAGAGGCGAAATTGCTCTTT-ATCAT 382
Query 905 CCGTATCCGTGGTATCAATGCCATTGACCCAAAGACAAAGAAGATTTTGCAACTTTTGCG 964
|||||||||||||||||||||||||||||||| || ||||| |||||||| || ||||
Sbjct 383 TCGTATCCGTGGTATCAATGCCATTGACCCAAAAACCAAGAAAATTTTGCAGCTCCTGCG 442
Query 965 TTTAAGACAGAT-TTTCAATGGTGTGTT-CTTGAAGGTCAACAAGGCAACCATTAA-CAT 1021
||| |||||||| ||| ||||||||||| ||| ||||| ||||||||||| | ||| |||
Sbjct 443 TTTGAGACAGATCTTT-AATGGTGTGTTTCTT-AAGGTGAACAAGGCAAC-AGTAAACAT 499
Query 1022 GCTT-CGCCGTGTTGAACCCTATGTAACCTATGGATACCCGAACTTAAAAAGTGTGAAGG 1080
| || ||||| |||||||| || || || || |||||||| ||||| || ||||| ||||
Sbjct 500 G-TTGCGCCGAGTTGAACCTTACGTGACTTACGGATACCCAAACTTGAAGAGTGTCAAGG 558
Query 1081 AATTGATTTACAAACGAGGTTTTGGAAAGCTTAACCACCAGAGGACT-GC-CTTAACAGA 1138
|| |||| |||||| | |||| ||||||||| ||||||||||||| | || |||| | ||
Sbjct 559 AACTGATCTACAAAAGGGGTTATGGAAAGCTGAACCACCAGAGGA-TAGCACTTA-CTGA 616
Query 1139 CAATTCTATTGTAGATCAGGGGCTAGGAAAGCATGGCATCATCTGCGTTGAGGATCTGAT 1198
||| || ||||| ||||| | ||||| |||||||| ||||||||||| |||||||||||
Sbjct 617 CAACTCGATTGTGGATCAAGCTCTAGGGAAGCATGGTATCATCTGCGTGGAGGATCTGAT 676
Query 1199 CCATGAGATCATGACGGTTGGGCCACATTTCAAGGAAGCCAATAACTTTTTGTGGCCATT 1258
||||||||||||||| ||||| || || |||||||||||||| ||||| | ||||||||
Sbjct 677 CCATGAGATCATGACCGTTGGACCTCACTTCAAGGAAGCCAACAACTTCCTATGGCCATT 736
Query 1259 CCAGTTGAAGGCTCCATTGGGAGGGATGAAGAAGAAGAGGAACCATTACGTGGAAGGAGG 1318
||| |||||||| ||| | || || | ||||||||||| ||||| ||||| ||||| ||
Sbjct 737 CCAATTGAAGGCACCACTCGGTGGTCTTAAGAAGAAGAGAAACCACTACGTCGAAGGTGG 796
Query 1319 AGATGCTGGAAACCGCGAGAACTTCATCAACGAGCTCGTTAGGAGAATGAACTGA 1373
|||||||||||| | |||||||||||||||||||| || ||||||||||| |||
Sbjct 797 TGATGCTGGAAACAGGGAGAACTTCATCAACGAGCTTGTCAGGAGAATGAATTGA 851
> Ahg483534 jgi|Araly1|483534|fgenesh2_kg.4__2594__AT2G44120.2
Length=977
Score = 527 bits (285), Expect = 1e-148
Identities = 576/715 (81%), Gaps = 26/715 (4%)
Strand=Plus/Plus
Query 672 GAGTCAGTGTTGAAGAAGAGAAAGAGGGAGGAAGAATGGGCACTT-GCCAAGAAACAGG- 729
||||| || || || |||| |||||| | || ||||||||| || ||||||||| |||
Sbjct 178 GAGTCTGTATTAAAAAAGATCAAGAGGCAAGAGGAATGGGCA-TTGGCCAAGAAAGAGGA 236
Query 730 AGCTTGAGGCTGCCAAAAAGCAGAATGCTGAGAAGAGGAAACTCATATTTAACCGGGCTA 789
| | || ||||| || ||| ||| || ||| | | || ||||| || || | |||
Sbjct 237 AAC-TGTTGCTGCTAAGAAGAAGAGTGTTGACACCCGCAAGCTCATCTTCAAGAGAGCTG 295
Query 790 AACAGTACT-CCAAGGAGTAC-CAGGAGAAAGA-AAGGGAATTAATCCAG-CTGAAGCGT 845
| ||||| | |||| || ||| | ||||| || || || || |||| | |||| |
Sbjct 296 AGCAGTA-TGCCAAAGAATACGC-TGAGAAGGATAA-TGAGTTGATCC-GATTGAAAAGG 351
Query 846 GAGGCAAAATTGAAAGGAGGCTTTTATGTTGACCCAGAAGCTAAACTGCT-TTTCATTAT 904
||||| || ||||||||||| || |||||||| ||||| || ||| |||| ||| || ||
Sbjct 352 GAGGCTAAGTTGAAAGGAGGGTTCTATGTTGATCCAGAGGCGAAATTGCTCTTT-ATCAT 410
Query 905 CCGTATCCGTGGTATCAATGCCATTGACCCAAAGACAAAGAAGATTTTGCAACTTTTGCG 964
|||||||||||||||||||||||||||||||| || ||||| |||||||| || ||||
Sbjct 411 TCGTATCCGTGGTATCAATGCCATTGACCCAAAAACCAAGAAAATTTTGCAGCTCCTGCG 470
Query 965 TTTAAGACAGAT-TTTCAATGGTGTGTT-CTTGAAGGTCAACAAGGCAACCATTAA-CAT 1021
||| |||||||| ||| ||||||||||| ||| ||||| ||||||||||| | ||| |||
Sbjct 471 TTTGAGACAGATCTTT-AATGGTGTGTTTCTT-AAGGTGAACAAGGCAAC-AGTAAACAT 527
Query 1022 GCTT-CGCCGTGTTGAACCCTATGTAACCTATGGATACCCGAACTTAAAAAGTGTGAAGG 1080
| || ||||| |||||||| || || || || |||||||| ||||| || ||||| ||||
Sbjct 528 G-TTGCGCCGAGTTGAACCTTACGTGACTTACGGATACCCAAACTTGAAGAGTGTCAAGG 586
Query 1081 AATTGATTTACAAACGAGGTTTTGGAAAGCTTAACCACCAGAGGACT-GC-CTTAACAGA 1138
|| |||| |||||| | |||| ||||||||| ||||||||||||| | || |||| | ||
Sbjct 587 AACTGATCTACAAAAGGGGTTATGGAAAGCTGAACCACCAGAGGA-TAGCACTTA-CTGA 644
Query 1139 CAATTCTATTGTAGATCAGGGGCTAGGAAAGCATGGCATCATCTGCGTTGAGGATCTGAT 1198
||| || ||||| ||||| | ||||| |||||||| ||||||||||| |||||||||||
Sbjct 645 CAACTCGATTGTGGATCAAGCTCTAGGGAAGCATGGTATCATCTGCGTGGAGGATCTGAT 704
Query 1199 CCATGAGATCATGACGGTTGGGCCACATTTCAAGGAAGCCAATAACTTTTTGTGGCCATT 1258
||||||||||||||| ||||| || || |||||||||||||| ||||| | ||||||||
Sbjct 705 CCATGAGATCATGACCGTTGGACCTCACTTCAAGGAAGCCAACAACTTCCTATGGCCATT 764
Query 1259 CCAGTTGAAGGCTCCATTGGGAGGGATGAAGAAGAAGAGGAACCATTACGTGGAAGGAGG 1318
||| |||||||| ||| | || || | ||||||||||| ||||| ||||| ||||| ||
Sbjct 765 CCAATTGAAGGCACCACTCGGTGGTCTTAAGAAGAAGAGAAACCACTACGTCGAAGGTGG 824
Query 1319 AGATGCTGGAAACCGCGAGAACTTCATCAACGAGCTCGTTAGGAGAATGAACTGA 1373
|||||||||||| | |||||||||||||||||||| || ||||||||||| |||
Sbjct 825 TGATGCTGGAAACAGGGAGAACTTCATCAACGAGCTTGTCAGGAGAATGAATTGA 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58773248035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5