BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13610.1
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478752 jgi|Araly1|478752|fgenesh2_kg.3__1453__AT3G13610.1 1808 0.0
Ahg478920 jgi|Araly1|478920|fgenesh2_kg.3__1621__AT3G13610.1 1749 0.0
> Ahg478752 jgi|Araly1|478752|fgenesh2_kg.3__1453__AT3G13610.1
Length=1201
Score = 1808 bits (979), Expect = 0.0
Identities = 1133/1207 (94%), Gaps = 11/1207 (1%)
Strand=Plus/Plus
Query 1 ACAACACAATCAAAATCCCTAAAGTCTCAATCTTTAAGCAAATAAA-C-AAAAAAGCTCC 58
|||| ||||||||||| || ||||||||||| |||||||||| ||| | ||||||| |||
Sbjct 1 ACAATACAATCAAAAT-CCAAAAGTCTCAATTTTTAAGCAAACAAACCAAAAAAAGATCC 59
Query 59 TATCTTTTTTATTCCAATGGCTCCAACACTCTTGACAACCCAATTCTCAAATCCAGCTGA 118
||| |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 60 AATC-TTTTTA-TCCAATGGCTCCAACACTCTCAACAACCCAATTCTCAAACCCAGCTGA 117
Query 119 AGTAACCGACTTTGTAGTCTACAAAGGAAATGGTGTTAAGGGTTTATCAGAAACAGGAAT 178
|||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 118 AGTAACCGACTTCGTAGTCCACAAAGGAAATGGTGTAAAGGGTTTATCAGAAACAGGAAT 177
Query 179 CAAAGCTCTTCCAGAACAATACATTCAGCCACTTGAAGAACGACTCATCAACAAATTCGT 238
||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 178 CAAAGCTCTTCCAGATCAATACATCCAGCCATTTGAAGAACGACTCATCAACAAATTCGT 237
Query 239 CAACGAAACAGATGAAGCCATTCCAGTTATCGATATGTCGAACCCTGATGAGGACAGAGT 298
|||||||||||| ||||||||||| || |||||||||||||||||||| ||| |||||||
Sbjct 238 CAACGAAACAGACGAAGCCATTCCGGTGATCGATATGTCGAACCCTGACGAGAACAGAGT 297
Query 299 CGCTGAAGCTGTTTGTGATGCTGCTGAGAAATGGGGGTTCTTTCAAGTGATCAATCATGG 358
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 298 CGCTGAAGCTGTCTGTGATGCTGCTGAGAAATGGGGTTTCTTTCAAGTGATCAACCATGG 357
Query 359 AGTTCCTTTGGAAGTTCTTGATGACGTCAAGGCTGCGACTCACAAG-TTCTTCAATCTCC 417
||| ||||||||||||||||| || || ||||| ||||||||| || |||||||||||||
Sbjct 358 AGTCCCTTTGGAAGTTCTTGACGATGTTAAGGCGGCGACTCAC-AGATTCTTCAATCTCC 416
Query 418 CTGTTGAAGAGAAGCGCAAGTTCACTAAAGAGAATTCGCTGTCGACGACTGTTAGGTTTG 477
|||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 417 CTGTTGAAGAGAAGTGCAAATTCACTAAAGAGAATTCTCTGTCGACGACTGTTAGGTTTG 476
Query 478 GGACGAGTTTTAGTCCTCTTGCAGAGCAAGCGCTTGAGTGGAAAGATTATCTCAGCCTCT 537
||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 477 GGACGAGTTTTAGTCCTCTTGCAGAGCAAGCTCTCGAGTGGAAAGATTATCTCAGTCTCT 536
Query 538 TCTTTGTCTCTGAAGCTGAAGCTGAACAGTTCTGGCCTGATATCTGCAGGAATGAAACGT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TCTTTGTCTCTGAAGCTGAAGCTGAACAGTTCTGGCCTGATATCTGCAGGAATGAAACGT 596
Query 598 TAGAGTACATTAACAAGTCAAAGAAGATGGTGAGGAGGCTTCTAGAGTATTTGGGAAAGA 657
||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 597 TAGAGTACATTGACAAGTCAAAGAAGATGGTGAGGAAGCTTCTAGAGTATTTGGGGAAGA 656
Query 658 ATCTCAATGTTAAAGAGCTTGACGAGACGAAAGAATCACTCTTTATGGGCTCGATTCGAG 717
||||||| || || ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 657 ATCTCAACGTGAAGGAGCTAGACGAGACGAAAGAATCACTCTTTATGGGTTCGATTCGAG 716
Query 718 TCAACCTTAACTACTACCCCATCTGCCCTAATCCGGACCTAACAGTTGGTGTTGGTCGCC 777
||||||| |||||||| || || || ||||| ||||||||||| ||||||||||||||||
Sbjct 717 TCAACCTCAACTACTATCCGATTTGTCCTAACCCGGACCTAACCGTTGGTGTTGGTCGCC 776
Query 778 ACTCAGACGTCTCTTCTCTCACCATTCTCTTACAAGACCAGATCGGTGGTCTACACGTGC 837
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 777 ACTCAGACGTCTCTTCTCTCACCATCCTCTTACAAGACCAGATCGGTGGTCTACACGTGC 836
Query 838 GTTCTCTGGCTTCAGGGAACTGGGTTCACGTGCCTCCGGTTGCTGGATCTTTTGTGATCA 897
|||||||||| ||||||||||||||||||||||| |||||| | || |||||||||||||
Sbjct 837 GTTCTCTGGCATCAGGGAACTGGGTTCACGTGCCACCGGTTCCCGGGTCTTTTGTGATCA 896
Query 898 ACATCGGAGATGCGATGCAGATCATGAGCAATGGTCTGTACAAGAGCGTGGAGCATCGTG 957
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 897 ACATCGGAGATGCGATGCAGATCTTGAGCAATGGTCGGTACAAGAGCGTGGAGCATCGTG 956
Query 958 TCTTAGCCAATGGTTACAATAATAGAATCTCTGTTCCTATCTTTGTGAACCCAAAACCAG 1017
|||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 957 TCTTAGCCAACGGTAACAATAACAGAATCTCTGTTCCTATCTTTGTGAATCCAAAACCAG 1016
Query 1018 AGTCAGTTATTGGTCCTCTACCTGAGGTGATTGCAAACGGAGAGGAACCGATTTACAGAG 1077
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AGTCAGTGATTGGTCCTCTACCTGAGGTGATTGCAAACGGAGAGGAACCGATTTACAGAG 1076
Query 1078 ACGTCCTGTACTCTGATTACGTCAAGTATTTCTTCAGGAAGGCACACGATGGAAAGAAAA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 ACGTCCTGTACTCTGATTACGTCAAGTATTTCTTCAGGAAGGCACACGATGGAAAGAAAA 1136
Query 1138 CCGTCGATTACGCCAAGATCTGATCATAAAT-AACCTCAAGGAGTTCGA-TTTCtttttt 1195
|||||||||||||||||||||||||| || | ||||||||||||||||| ||| ||||||
Sbjct 1137 CCGTCGATTACGCCAAGATCTGATCACAA-TCAACCTCAAGGAGTTCGAATTT-TTTTTT 1194
Query 1196 ttttttt 1202
|||||||
Sbjct 1195 TTTTTTT 1201
> Ahg478920 jgi|Araly1|478920|fgenesh2_kg.3__1621__AT3G13610.1
Length=1282
Score = 1749 bits (947), Expect = 0.0
Identities = 1179/1285 (92%), Gaps = 40/1285 (3%)
Strand=Plus/Plus
Query 70 TTCCAATGGCTCCAACACTCTTGACAACCCAATTCTCAAATCCAGCTGAAGTAACCGACT 129
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 34 TTCCAATGGCTCCAACACTCTCAACAACCCAATTCTCAAACCCAGCTGAAGTAACCGACT 93
Query 130 TTGTAG-TCTACAAAGGAAATGGTGTTAAGGGTTTATCAGAAACAGGAATCAAAGCTCTT 188
| |||| || |||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 94 TCGTAGTTC-ACAAAGGAAATGGTGTAAAGGGTTTATCAGAAACTGGAATCAAAGCTCTT 152
Query 189 CCAGAACAATACATTCAGCCACTTGAAGAACGACTCATCAACAAATTCGTCAACGAAACA 248
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 CCAGATCAATACATCCAGCCACTTGAAGAACGACTCATCAACAAATTCGTCAACGAAACA 212
Query 249 GATGAAGCCATTCCAGTTATCGATATGTCGAACCCTGATGAGGACAGAGTCGCTGAAGCT 308
|||||||||||||| || ||||||||||||| |||||| ||| |||||||||||||||||
Sbjct 213 GATGAAGCCATTCCGGTGATCGATATGTCGAGCCCTGACGAGAACAGAGTCGCTGAAGCT 272
Query 309 GTTTGTGATGCTGCTGAGAAATGGGGGTTCTTTCAAGTGATCAATCATGGAGTTCCTTTG 368
|| ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 273 GTCTGTGATGCTGCTGAGAAATGGGGTTTCTTTCAAGTTATCAATCATGGAGTCCCTTTG 332
Query 369 GAAGTTCTTGATGACGTCAAGGCTGCGACTCACAAG-TTCTTCAATCTCCCTGTTGAAGA 427
||||||||||| ||||| ||||||||||||||| || |||||||||||||||||||||||
Sbjct 333 GAAGTTCTTGACGACGTGAAGGCTGCGACTCAC-AGATTCTTCAATCTCCCTGTTGAAGA 391
Query 428 GAAGCGCAAGTTCACTAAAGAGAATTCGCTGTCGACGACTGTTAGGTTTGGGACGAGTTT 487
|||| |||| ||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 392 GAAGTGCAAATTCACTAAAGAGAATTCTCTGTCGACGAATGTTAGGTTTGGGACGAGTTT 451
Query 488 TAGTCCTCTTGCAGAGCAAGCGCTTGAGTGGAAAGATTATCTCAGCCTCTTCTTTGTCTC 547
|||||| ||||||||| || | || |||||||||||||||||||| ||||||||||||||
Sbjct 452 TAGTCCCCTTGCAGAGAAATCTCTCGAGTGGAAAGATTATCTCAGTCTCTTCTTTGTCTC 511
Query 548 TGAAGCTGAAGCTGAACAGTTCTGGCCTGATATCTGCAGGAATGAAACGTTAGAGTACAT 607
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 512 TGAAGCTGAAGCTGAACAGTTCTGGCCTGATATCTGCAGGAATGAAACATTAGAGTACAT 571
Query 608 TAACAAGTCAAAGAAGATGGTGAGGAGGCTTCTAGAGTATTTGGGAAAGAATCTCAATGT 667
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 572 GAACAAGTCAAAGAAGATGGTGAGGAAGCTTCTAGAGTATTTGGGGAAGAATCTCAATGT 631
Query 668 TAAAGAGCTTGACGAGACGAAAGAATCACTCTTTATGGGCTCGATTCGAGTCAACCTTAA 727
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 632 TAAAGAGCTCGACGAGACGAAAGAATCACTCTTTATGGGTTCGATTCGAGTCAACCTCAA 691
Query 728 CTACTACCCCATCTGCCCTAATCCGGACCTAACAGTTGGTGTTGGTCGCCACTCAGACGT 787
|||||| || ||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 692 CTACTATCCGATCTGCCCTAACCCGGACCTAACCGTCGGTGTTGGTCGCCACTCAGACGT 751
Query 788 CTCTTCTCTCACCATTCTCTTACAAGACCAGATCGGTGGTCTACACGTGCGTTCTCTGGC 847
|||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 752 CTCTTCTCTCACTATTCTCTTACAAGATCAGATCGGCGGTCTACACGTGCGTTCTCTGGC 811
Query 848 TTCAGGGAACTGGGTTCACGTGCCTCCGGTTGCTGGATCTTTTGTGATCAACATCGGAGA 907
||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||
Sbjct 812 GTCAGGGAACTGGGTTCACGTGCCACCGGTTCCCGGATCTTTTGTGATCAACATCGGAGA 871
Query 908 TGCGATGCAGATCATGAGCAATGGTCTGTACAAGAGCGTGGAGCATCGTGTCTTAGCCAA 967
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 872 TGCGATGCAGATCTTGAGCAATGGTCGGTACAAGAGCGTGGAGCATCGTGTCTTAGCCAA 931
Query 968 TGGTTACAATAATAGAATCTCTGTTCCTATCTTTGTGAACCCAAAACCAGAGTCAGTTAT 1027
||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 932 TGGCAACAATAACAGAATCTCTGTTCCTATCTTTGTGAATCCAAAACCAGAGTCAGTGAT 991
Query 1028 TGGTCCTCTACCTGAGGTGATTGCAAACGGAGAGGAACCGATTTACAGAGACGTCCTGTA 1087
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 992 TGGTCCTCTACCTGAGGTGATTGCAAATGGAGAGGAACCGATTTACAGAGACGTCCTGTA 1051
Query 1088 CTCTGATTACGTCAAGTATTTCTTCAGGAAGGCACACGATGGAAAGAAAACCGTCGATTA 1147
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1052 CTCTGATTACGTCAGGTATTTCTTCAGGAAGGCACACGACGGAAAGAAAACCGTCGATTA 1111
Query 1148 CGCCAAGATCTGATCATAAATA-ACCTCAAGGAGTTCGATTTCtttttttttttttGGTT 1206
|||||||||||||||| || | ||||| ||||||||||||||||||| ||| | | ||
Sbjct 1112 CGCCAAGATCTGATCACAA-TCGACCTCGAGGAGTTCGATTTCTTTTTGTTTCAT-G-TT 1168
Query 1207 TTGTTTCCTGTTTGTGTTGTGTTAGTGAATAAAagaagagagaagagagaCATATGTGAT 1266
| || ||| |||| ||| ||||||||||| || ||| | ||
Sbjct 1169 T-GT-----GTT-GTGT-GTG--AGTGAATAAAA-AA-AGA-----------T--GT--- 1200
Query 1267 GTCTTCTTGAACCAGTTTCTCTGTTCAGAATTGTGTTGTATAAATTG-CTATCATTGATC 1325
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1201 --CTTCTTGAACCAGTTTCTCTGTTCAGAATTGTGTTGTA-AAATTTACTATCATTGATC 1257
Query 1326 AATACAGTTTCTCTTTTATCAGACT 1350
|||||||||| ||||||||||||||
Sbjct 1258 AATACAGTTTTTCTTTTATCAGACT 1282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50703479610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5