BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13620.1
Length=1664
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929107 jgi|Araly1|929107|scaffold_301564.1 2314 0.0
Ahg904420 jgi|Araly1|904420|Al_scaffold_0003_1548 261 1e-68
> Ahg929107 jgi|Araly1|929107|scaffold_301564.1
Length=1477
Score = 2314 bits (1253), Expect = 0.0
Identities = 1402/1475 (95%), Gaps = 5/1475 (0%)
Strand=Plus/Plus
Query 53 aaaacaa-aacac-aaaaaTGGCAATCTCAGAGGCATCGAAATCGAGCCACGAGCTCCCA 110
|||| || ||||| ||||||| ||||||||||| |||||| ||| |||||||||||||||
Sbjct 3 AAAAAAAGAACACAAAAAATGACAATCTCAGAGACATCGAGATCAAGCCACGAGCTCCCA 62
Query 111 GTAACAACAGCCGAATCCAGCGGGAAGAAAGCAACCGCAAAGAAACTGACTTTAATCCCT 170
|||||||||||||||| ||||| || | ||||||||| |||||||||||||| ||||||
Sbjct 63 TTAACAACAGCCGAATCAAGCGGAAACAGAGCAACCGCTAAGAAACTGACTTTGATCCCT 122
Query 171 TTGGTTTTCCTTATTTACTTTGAGGTCGCTGGTGGTCCATTTGGTGAAGAACCGGCGGTT 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 TTGGTTTTCCTTATTTACTTTGAGGTCGCTGGTGGTCCATTTGGTGAAGAACCGGCGGTT 182
Query 231 CAAGCGGCTGGACCGCTTTTAGCGATTCTCGGTTTCCTTATCTTCCCTTTCATTTGGAGT 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CAAGCGGCTGGACCGCTTTTAGCGATTCTCGGTTTCCTTATCTTCCCTTTCATTTGGAGT 242
Query 291 ATCCCTGAAGCCCTAATCACTGCAGAGCTCTCCACTGCGTTTCCAGGCAACGGAGGGTTT 350
||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 243 GTCCCTGAGGCCCTAATCACCGCTGAGCTCTCCACTGCGTTTCCAGGCAACGGAGGGTTT 302
Query 351 GTGATATGGGCGCATCGAGCATTTGGCTCTTTCGTGGGCTCAATGATGGGTTCGTTGAAG 410
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 303 GTGATATGGGCACATCGGGCATTTGGTTCTTTCGTGGGCTCAATGATGGGTTCGTTGAAG 362
Query 411 TTCCTTAGTGGGGTGATTAACGTTGCTTCGTTTCCTGTTCTCTGTGTCACTTACTTGGAT 470
||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 363 TTCCTGAGTGGTGTGATTAACGTTGCTTCGTTTCCTGTACTCTGTGTTACTTACTTGGAT 422
Query 471 AAGCTCTTCCCTGTTCTTGAATCCGGATGGCCTCGAAATGTCTGCATATTCGCCTCGACG 530
||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 423 AAGCTATTCCCTGTTCTTGAATCCGGATGGCCCCGAAATGTCTGCATTTTCGCCTCAACG 482
Query 531 GTGGTCTTGTCTTTCTTAAACTATACTGGCTTAGCCATTGTAGGTTACGCAGCTGTTGTG 590
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 483 GTGGTCTTATCTTTCTTAAACTATACTGGCTTAGCCATTGTGGGTTACGCAGCTGTCGTT 542
Query 591 CTCGGTCTGGTGTCTCTCTCGCCTTTCCTTGTCATGTCGGCTATGGCTATCCCTAAGATC 650
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 543 CTCGGTCTGGTGTCTCTCTCGCCTTTCCTTGTTATGTCGGCTATGGCAATCCCTAAGATC 602
Query 651 AAACCTCACCGTTGGGGTAGTTTAGGAACCAAGAAAAAGGATTGGAATCTCTACTTCAAC 710
|||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||
Sbjct 603 AAACCTCACCGTTGGGGTAGCTTAGGAAACAAGAAAAAAGATTGGAATCTCTACTTCAAC 662
Query 711 ACACTCTTCTGGAACTTGAATTTCTGGGACAATGTCAGTACTCTTGCAGGGGAAGTGGAC 770
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 ACACTCTTTTGGAACTTGAATTTCTGGGACAATGTCAGTACTCTTGCAGGGGAAGTGGAC 722
Query 771 GAGCCTCAAAAGACGTTCCCTTTGGCGCTTCTTATCGCTGTGATCTTCACTTGTGTAGCT 830
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 723 GAGCCTCAAAAGACATTCCCGTTGGCGCTTCTTATCGCTGTGATCTTCACTTGTGTTGCT 782
Query 831 TACTTGATTCCTCTTTTCGCTGTCACGGGTGCGGTCTCGGTAGATCAGAGCAGATGGGAA 890
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 783 TACTTGATTCCTCTTTTCGCTGTCACGGGTGCAGTCTCAGTAGATCAGAGCAGATGGGAA 842
Query 891 AACGGGTTTCACGCAGAAGCAGCTGAGATGATTGCAGGGAAATGGTTGAAAATATGGATT 950
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 843 AACGGGTTTCACGCAGAAGCAGCTGAGATGATTGCAGGGAAATGGCTGAAAATATGGATT 902
Query 951 GAGATTGGTGCTGTCTTATCGAGCATTGGACTTTTCGAAGCTCAGTTAAGCAGTAGTGCT 1010
||||| || ||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 903 GAGATCGGCGCTGTCTTATCAAGTATCGGACTTTTCGAAGCTCAGTTAAGCAGTAGTGCT 962
Query 1011 TATCAGCTGGAGGGGATGGCGGAATTAGGGTTCTTGCCTAAATTCTTTGGGGTACGGTCG 1070
|||||||||||||||||||||||| | |||||| |||||||||||||||||||||| |||
Sbjct 963 TATCAGCTGGAGGGGATGGCGGAAATGGGGTTCCTGCCTAAATTCTTTGGGGTACGATCG 1022
Query 1071 AAATGGTTCAACACTCCTTGGGTCGGGATTCTAATCTCAGCTCTCATGTCGCTCGGGTTA 1130
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1023 AAATGGTTCAACACCCCTTGGCTCGGGATTCTAATCTCAGCTCTCATGTCGCTCGGATTA 1082
Query 1131 TCGTACATGAACTTCACAGACATCATATCCTCGGCGAATTTCTTGTACACTCTAGGGATG 1190
|| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1083 TCATACATGAACTTCACAGACATCATATCCTCGGCAAATTTCTTGTACACTTTAGGGATG 1142
Query 1191 TTTCTAGAGTTTGCATCTTTCATTTGGTTAAGAAGAAAACTACCTCAGCT-AAAGAGACC 1249
|||||||||||||| |||||||||||||||||||||||||||||| | | |||||||||
Sbjct 1143 TTTCTAGAGTTTGCGTCTTTCATTTGGTTAAGAAGAAAACTACCTG-GTTTAAAGAGACC 1201
Query 1250 TTACCGAGTTCCGCTGAAAATACCGGGGCTGGTGGTTATGTGCTTGATACCTTCGGCGTT 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 TTACCGAGTTCCGCTGAAAATACCGGGGCTGGTGGTTATGTGCTTGATACCTTCGGCGTT 1261
Query 1310 TCTAGTGCTGATTTTAGTGTTTGCTACTAAGATTGTGTACCTTATTTGCGGTGTAATGAC 1369
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1262 TCTAGTGCTGATTATAGTGTTTGCTACTAAGATCGTGTACCTTATTTGCGGTGTAATGAC 1321
Query 1370 CATAGGAGCAATCGGTTGGTACTTCTTGATCAACTACTTCAGAAAGACGAAGATCTTCGA 1429
||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1322 CATAGGAGCTATCGGTTGGTACTTCTTGATCAACTACTTCAGGAAGAAGAAGATCTTCGA 1381
Query 1430 ATTCAACGAAGTTATCGATGATCTTGACAACAATGTCAACGGAGAACATCCCAAAGTCGA 1489
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 ATTCAACGAAGTTATTGATGATCTTGACAACAATGTCAACGGAGAACATCCCAAAGTCGA 1441
Query 1490 TGATCACAATTCATGATAAGAGTTAAACAGAGGAT 1524
|||||||||||||||||| || |||||||||||||
Sbjct 1442 TGATCACAATTCATGATA-GATTTAAACAGAGGAT 1475
> Ahg904420 jgi|Araly1|904420|Al_scaffold_0003_1548
Length=324
Score = 261 bits (141), Expect = 1e-68
Identities = 181/199 (91%), Gaps = 8/199 (4%)
Strand=Plus/Plus
Query 474 CTCTTCCCTGTTCTTGAATCCGGATGGCCTCGAAATGTCTGCATATTCGCCT---C-G-- 527
||||||||||||||||||||||| ||||| |||||||||||||||||||||| | |
Sbjct 1 CTCTTCCCTGTTCTTGAATCCGGGTGGCCCCGAAATGTCTGCATATTCGCCTCAACAGAC 60
Query 528 -ACGGTGGTCTTGTCTTTCTTAAACTATACTGGCTTAGCCATTGTAGGTTACGCAGCTGT 586
|| |||||||| | ||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 61 AACAGTGGTCTTAT-TTTTTTAAACTATACTGGCTTAGCTATTGTGGGTTACGCAGCTGT 119
Query 587 TGTGCTCGGTCTGGTGTCTCTCTCGCCTTTCCTTGTCATGTCGGCTATGGCTATCCCTAA 646
||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 120 TGTTCTCGGTCTGGTGTCTCTCTCGCCTTTCCTTGTTATGTCGGCTATGGCAATCCCTAA 179
Query 647 GATCAAACCTCACCGTTGG 665
|||||||||||||||||||
Sbjct 180 GATCAAACCTCACCGTTGG 198
Score = 110 bits (59), Expect = 5e-23
Identities = 63/65 (97%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 748 GTACTCTTGCAGGGGAAGTGGACGAGCCTCAAAAGACGTTCCCTTTGGCGCTTCTTATCG 807
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 198 GTACTCTTGCAGGGGAAGTGGACGAGCCTCAAAAGACATTCCCGTTGGCGCTTCTTATCG 257
Query 808 CTGTG 812
|||||
Sbjct 258 CTGTG 262
Score = 99.0 bits (53), Expect = 1e-19
Identities = 53/53 (100%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1003 GTAGTGCTTATCAGCTGGAGGGGATGGCGGAATTAGGGTTCTTGCCTAAATTC 1055
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 GTAGTGCTTATCAGCTGGAGGGGATGGCGGAATTAGGGTTCTTGCCTAAATTC 315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62391821310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5