BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13624.1
Length=1792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929122 jgi|Araly1|929122|scaffold_301579.1 416 3e-115
Ahg929032 jgi|Araly1|929032|scaffold_301489.1 416 3e-115
Ahg929143 jgi|Araly1|929143|scaffold_301600.1 252 8e-66
Ahg937320 jgi|Araly1|937320|scaffold_501511.1 187 2e-46
Ahg478813 jgi|Araly1|478813|fgenesh2_kg.3__1514__AT3G14030.1 187 2e-46
Ahg951995 jgi|Araly1|951995|scaffold_28600002.1 178 1e-43
> Ahg929122 jgi|Araly1|929122|scaffold_301579.1
Length=1248
Score = 416 bits (225), Expect = 3e-115
Identities = 833/1112 (75%), Gaps = 99/1112 (9%)
Strand=Plus/Plus
Query 1 ATGACGACAATTTCTGATCTTCCTGAG-GATGTGGTAGAGGAGATACTCCCTAGGGTTCC 59
||||||||||| |||||||| | | ||| ||||||||||||||||| | ||||||||
Sbjct 21 ATGACGACAATGGGGGATCTTCCAG-GCGATTTGGTAGAGGAGATACTCTCAAGGGTTCC 79
Query 60 ATTGACATCTCTGAGCGC-AGTGCGATCCATTTGCAAAACGTGGAA-TACTTTGTCCAAG 117
||||||||||||| || | | ||||||| |||||||| |||||| | |||| || ||
Sbjct 80 GCTGACATCTCTGAGGGCTA-TACGATCCACTTGCAAAAAGTGGAACT-CTTTATCGAAA 137
Query 118 AATCGTG-TTCTTT-GT---AAAG---CGGCAGTAAAGAAACAGTTTTTGGGATTCATTA 169
|||| | || ||| || |||| | |||| || ||| |||||| |||| || || |
Sbjct 138 AATC-AGATT-TTTGGTAAAAAAGCAACAGCAGCAAGGAAGCAGTTTATGGGGTTTATGA 195
Query 170 TGATGGATT-ATAGGGTTTGCTCCA-TGAAATTCCATCTCC---GAA-ACG--ACGAGGG 221
||| ||||| | ||| |||| || | || ||||| |||||| ||| || |||| |
Sbjct 196 TGAAGGATTCA-AGGCTTTGTTCAATTG-AATTCGATCTCCAAGGAATCCGAAACGA-CG 252
Query 222 A-GG-AGACTTGGTTGATGATCTATCTATAAAGCAAGTAGGTATACTTGATCAAATCGAG 279
| || | |||| | | ||||| |||||||||||||||| || ||| |||||| |||||
Sbjct 253 ACGGCA-ACTTCG-T--TGATCCATCTATAAAGCAAGTAAATAAACTCGATCAATTCGAG 308
Query 280 ATATCTGAAGTCTTACATTGTGACGGCTTACTCCTTTTCGTCACTAAGGACAACTCAAGT 339
| ||| |||| || || |||||||| ||| |||| | | ||| |||||||||| || |
Sbjct 309 GTCTCTCAAGTTTTTCACTGTGACGGTTTAGTCCTATGCATCATTAAGGACAACACAGGG 368
Query 340 CT-TGTGGTATGGAATCCC-TATTTGGGGCAAACGAGGTTGATACAACCCAGTAACAATT 397
|| | |||||||||| ||| |||||||||||||| |||| ||| ||||| || |||||||
Sbjct 369 CTCT-TGGTATGGAA-CCCTTATTTGGGGCAAACTAGGTCGATCCAACCGAGAAACAATT 426
Query 398 TCCA-CTGTTCAGACCGCTATGCTATCGGATATGACAATAACCGTAACCT-CAAAATCTT 455
|||| || |||| | |||||| | |||||||| || |||||||| || |||||| ||
Sbjct 427 TCCAGATG-GAAGACAGGTATGCTCTTGGATATGATAACAACCGTAA-CTACAAAATTTT 484
Query 456 GAGGAATTTC-A-GTG-AT-TATG--G-AA--GC---TCTGGTTATGAAATCTACAATTT 503
||||| |||| | || || | | | || || | ||| || ||| ||||| ||||
Sbjct 485 GAGGATTTTCGATTTGTATCCAAGCAGAAACCGCGTTTTTGGGTACGAAGTCTACGATTT 544
Query 504 TCGTTCTAATTCATGAAAGAGTT-TTGATCTCACTTCCGACTGGTATATAGGGTCTAATA 562
| | ||||||||||| ||| || ||||| ||| | ||| ||| ||||| |||| ||
Sbjct 545 TAGCTCTAATTCATGGAAG-CTTCTTGATGTCAATCCCGGGTGGGATATACAGTCTCATC 603
Query 563 AACGTGGCGTGTCTTT-CAAGGGAAATACATA-CATCTTGGCTC-AAGGGAAAATA-AGA 618
| |||||||||||||| ||||| ||||| || || | || | || | |||| | |||
Sbjct 604 ATCGTGGCGTGTCTTTGAAAGGG-AATACTTATTTTCCT-GCGCAAAAGAAAAAAACAGA 661
Query 619 --GTGG-AT--AGTAGATGGAAGATTGAGGCTATTTTACTCTCG-TTTGATTTTACAA-C 671
| || || || | | || ||||| | | || |||| | | ||||||||||||| |
Sbjct 662 GGGAGGAATAAAG-ACAACTAATATTGAAGATGTTCTACT-TTGTTTTGATTTTACAAGC 719
Query 672 TGAGAGATTTGGACCGCGGT-TG-CAGCTTCCGTTTGGCTTTTATTATCCACAAGATTTG 729
|||||||||||||||| | || || || |||||| || ||| || || || ||||
Sbjct 720 -GAGAGATTTGGACCGC-CTCTGCCA-CTGCCGTTTCACTCTTACAATGCAGAA-ATTTT 775
Query 730 T-TCTCTTTATCTTGTGTCAGAGAAGAGCAGCTCG-TGGTATTACATCAAAGCT-GGATG 786
| ||||| |||||||||| || ||||||||||||| | | ||| ||||| ||| ||| |
Sbjct 776 TGTCTCTCTATCTTGTGTTAGGGAAGAGCAGCTCGCT-ATGTTATATCAACGCTGGGA-G 833
Query 787 GTTTCTGGCGA-ACTGGAGATTTG-GATTACGAATAAGATTGATCCCGGTGTTGTCTCGT 844
| | | | || | | |||||||| | |||| ||||||||||||||| | || || |
Sbjct 834 GCATGT-GAGACAATCGAGATTTGTG-TTACAAATAAGATTGATCCCAATACGGTTTCAT 891
Query 845 GGACCAAGTTTTTGAGATCCATCTCTTG-TTGT-CGAATTAGTATC-C--AAGCTGGGAG 899
||| ||||||||||| | | || || | || | || || | | | | |||||||
Sbjct 892 GGAGCAAGTTTTTGATAACGTTCACTGGCTT-TCCG-GTT-G-A-CACTTTTTCTGGGAG 946
Query 900 -TTTCTTCATTAACGAGGAGAATCAAGTGGCTGTGGTTTTCGATCTTGACGA-ATATAAA 957
||| |||||| | |||||||| |||| ||||||||||| ||||| || | |||||||
Sbjct 947 CTTT-TTCATTGATGAGGAGAAGAAAGTTGCTGTGGTTTTTGATCTAGA-TAGATATAAA 1004
Query 958 GGGAGTGAGACATGTCGCAACCAAACAGCTTACATTATCGGACAAGATGAATACTTCAAA 1017
|| ||||| |||||| |||||| |||| | ||||| |||||||||||||||||||||
Sbjct 1005 CCGACCGAGACCTGTCGCTACCAAATAGCTCATATTATTGGACAAGATGAATACTTCAAA 1064
Query 1018 TCTGTGAATATTGGGGAGGCTCCGAATCTCGG 1049
||||||||||| || | || || ||||||||
Sbjct 1065 TCTGTGAATATCGGAGTTGCGCCAAATCTCGG 1096
Score = 244 bits (132), Expect = 1e-63
Identities = 524/704 (74%), Gaps = 63/704 (9%)
Strand=Plus/Plus
Query 1118 TACAATTTTCGTTCTAATTCATGAAAGAGTT-TTGATCTCACTTCCGACTGGTATATAGG 1176
||| ||||| | ||||||||||| ||| || ||||| ||| | ||| ||| |||||
Sbjct 537 TACGATTTTAGCTCTAATTCATGGAAG-CTTCTTGATGTCAATCCCGGGTGGGATATACA 595
Query 1177 GTCTAATAAACGTGGCGTGTCTTT-CAAGGGAAATACATA-CATCTTGGCTC-AAGGGAA 1233
|||| || | |||||||||||||| ||||| ||||| || || | || | || | ||
Sbjct 596 GTCTCATCATCGTGGCGTGTCTTTGAAAGGG-AATACTTATTTTCCT-GCGCAAAAGAAA 653
Query 1234 AATA-AGA--GTGG-AT--AGTAGATGGAAGATTGAGGCTATTTTACTCTCG-TTTGATT 1286
|| | ||| | || || || | | || ||||| | | || |||| | | |||||||
Sbjct 654 AAAACAGAGGGAGGAATAAAG-ACAACTAATATTGAAGATGTTCTACT-TTGTTTTGATT 711
Query 1287 TTACAA-CTGAGAGATTTGGACCGCGGT-TG-CAGCTTCCGTTTGGCTTTTATTATCCAC 1343
|||||| | |||||||||||||||| | || || || |||||| || ||| || ||
Sbjct 712 TTACAAGC-GAGAGATTTGGACCGC-CTCTGCCA-CTGCCGTTTCACTCTTACAATGCAG 768
Query 1344 AAGATTTGT-TCTCTTTATCTTGTGTCAGAGAAGAGCAGCTCG-TGGTATTACATCAAAG 1401
|| |||| | ||||| |||||||||| || ||||||||||||| | | ||| ||||| |
Sbjct 769 AA-ATTTTTGTCTCTCTATCTTGTGTTAGGGAAGAGCAGCTCGCT-ATGTTATATCAACG 826
Query 1402 CT-GGATGGTTTCTGGCGA-ACTGGAGATTTG-GATTACGAATAAGATTGATCCCGGTGT 1458
|| ||| || | | | || | | |||||||| | |||| ||||||||||||||| |
Sbjct 827 CTGGGA-GGCATGT-GAGACAATCGAGATTTGTG-TTACAAATAAGATTGATCCCAATAC 883
Query 1459 TGTCTCGTGGACCAAGTTTTTGAGATCCATCTCTTG-TTGT-CGAATTAGTATC-C--AA 1513
|| || |||| ||||||||||| | | || || | || | || || | | | |
Sbjct 884 GGTTTCATGGAGCAAGTTTTTGATAACGTTCACTGGCTT-TCCG-GTT-G-A-CACTTTT 938
Query 1514 GCTGGGAG-TTTCTTCATTAACGAGGAGAATCAAGTGGCTGTGGTTTTCGATCTTGACGA 1572
||||||| ||| |||||| | |||||||| |||| ||||||||||| ||||| || |
Sbjct 939 TCTGGGAGCTTT-TTCATTGATGAGGAGAAGAAAGTTGCTGTGGTTTTTGATCTAGA-TA 996
Query 1573 -ATATAAAGGGAGTGAGACATGTCGCAACCAAACAGCTTACATTATCGGACAAGATGAAT 1631
||||||| || ||||| |||||| |||||| |||| | ||||| |||||||||||||
Sbjct 997 GATATAAACCGACCGAGACCTGTCGCTACCAAATAGCTCATATTATTGGACAAGATGAAT 1056
Query 1632 ACTTCAAATCTGTGAATATTGGGGAGGCTCCGAATCTCGGAAGACC-TGAGAAA-T---A 1686
||||||||||||||||||| || | || || |||||||| | | | | | ||| | |
Sbjct 1057 ACTTCAAATCTGTGAATATCGGAGTTGCGCCAAATCTCGGGATATCGT-ACAAAGTTGGA 1115
Query 1687 TG--CTCC-ACA-CATA-TATTGTCGCCCACTTGTGTGCTCTTC-T--TATGTTCCAAGC 1738
| |||| || |||| | | || || ||||||||||||||| | ||||||||||||
Sbjct 1116 TTTACTCCGACGGCATACTGT-GTT-CC-ACTTGTGTGCTCTTCATCCTATGTTCCAAGC 1172
Query 1739 TTAGTGCCGCTCCAAATCAACCAACCAGACACAAGGAAAGAAAG 1782
||||| | || ||||||||| |||||| || ||||||||||||
Sbjct 1173 TTAGTTCAACTACAAATCAACAAACCAGGCAAAAGGAAAGAAAG 1216
> Ahg929032 jgi|Araly1|929032|scaffold_301489.1
Length=1468
Score = 416 bits (225), Expect = 3e-115
Identities = 466/576 (81%), Gaps = 42/576 (7%)
Strand=Plus/Plus
Query 52 AGGGTTCCATTGACATCTCTGAGCGCAGTGCGATCCATTTGCAAAACGTGGAATACTTTG 111
|||||||||||||||||| ||| ||||||||||| | ||||||||||||||| ||||
Sbjct 567 AGGGTTCCATTGACATCTTTGAATGCAGTGCGATCAACTTGCAAAACGTGGAACGCTTTA 626
Query 112 TCCAAGAA-TCGT-GTTCTTT-GTAAAGC-G--GCAGTAAAGAAACAG--TTTT-TGGGA 162
||||| || || | ||| ||| ||||||| | ||||||||||| ||| |||| |||||
Sbjct 627 TCCAA-AACTC-TGGTT-TTTGGTAAAGCAGCAGCAGTAAAGAAGCAGCTTTTTATGGGA 683
Query 163 TTCATTATGATGGATTATAGGGTTTGCTCCATGAAATTCCATCTCCGAAACGACGAGGGA 222
||||||||||||||||||||||||||||| || ||||||||||||| |||||| | |||
Sbjct 684 TTCATTATGATGGATTATAGGGTTTGCTCGATTAAATTCCATCTCCAAAACGA-G-GGG- 740
Query 223 GGAGACTTGGTTGATGATCTATCTATAAAGCAAGTAGGTATACTTGATCAAATCGAGATA 282
||||||||||||| | || || ||||||||||||||||| |||| | ||| | ||||||
Sbjct 741 GGAGACTTGGTTG-T--TCCATGTATAAAGCAAGTAGGTACACTTAACCAAGTTGAGATA 797
Query 283 TCTGAAGTC-TTACATTGTGACGGCTTACTCCTTTTCGTCACTAAGGACAACTCAAGTCT 341
||| ||||| || || |||||||||||| | || | |||||||||||| |||||||||||
Sbjct 798 TCTAAAGTCCTT-CAATGTGACGGCTTATTGCTATGCGTCACTAAGGATAACTCAAGTCT 856
Query 342 TGTGGTATGGAATCCCTATTTGGGGCAAACGAGGTTGATACAACCCAGTAACAATTTCCA 401
|||||||||||||||||||||||||||||| |||| ||| |||||| | ||||||||| |
Sbjct 857 TGTGGTATGGAATCCCTATTTGGGGCAAACTAGGTGGATCCAACCCCGAAACAATTTCGA 916
Query 402 CT-GTTCAGACC-GCTATGCTATCGGATATGACAATAACCGTAACCTCAAAATCTTGAGG 459
||| |||| | |||||| | ||||| ||||| |||||||| | |||||||||||||
Sbjct 917 AGAGTT-AGACAAG-TATGCTCTTGGATACGACAAGAACCGTAATCACAAAATCTTGAGG 974
Query 460 AATTTCAGTGATT-ATGGAAGC----TC----T----GGTTATGAAATCTACAATTTTCG 506
|||| ||| || | | |||| || | |||||||||||||||| ||| |
Sbjct 975 GTTTTCTGTGTTTCA-GAAAGCGGACTCGGAGTTTTTGGTTATGAAATCTACAGTTTGAG 1033
Query 507 TTCTAATTCATGAAAGAGTTTT-GAT-CTCACTTCCGACTGGTATATAGGGTCTAATAAA 564
||||||||||| ||| ||||| ||| | |||| |||||||| ||||| | | | ||
Sbjct 1034 CTCTAATTCATGGAAG-GTTTTTGATGC-CACTCCCGACTGGGATATACACTTTTTTGAA 1091
Query 565 CGTGGCGTGTCTTTCAAGGGAAATACATACATCTTG 600
| | ||||||||| || |||||||| || |||||
Sbjct 1092 CCCGTCGTGTCTTTGAAAGGAAATACTTATTTCTTG 1127
> Ahg929143 jgi|Araly1|929143|scaffold_301600.1
Length=1256
Score = 252 bits (136), Expect = 8e-66
Identities = 505/672 (75%), Gaps = 70/672 (10%)
Strand=Plus/Plus
Query 1122 ATTTTCGTTCTAATTCATGAAAGAG-TT-TTGATC-TCACTTCCGACTGGTATATAGGGT 1178
||||| | ||||||||||| || | || |||||| | | |||| |||| |||| |||
Sbjct 530 ATTTTAGCTCTAATTCATG-GAG-GTTTGTTGATCAT-AAACCCGAGTGGTTTATATGGT 586
Query 1179 CTAATAAACGTGGCGTGTCTTTCAAGGGAAATACATACATCTTG--GCTCAAGGGAAAAT 1236
|| || ||||||| |||||||| || |||||||| | || ||| ||| || |||||
Sbjct 587 CTCATCAACGTGGTGTGTCTTTGAAAGGAAATAC-T-TATTTTGCTGCTAAAAAGAAAAC 644
Query 1237 AAGAG-TGGATAGTAGATGGAAGATTGAGGCTATTTTACTCTCG-TTTGATTTTACAACT 1294
|| || ||| | | ||||||||||||| | ||| ||||||| | |||||||| |||||
Sbjct 645 AACAGTTGG-T-G--GATGGAAGATTGAAGATATCTTACTCT-GTTTTGATTTCACAACA 699
Query 1295 GAGAGATTTGGACCGCGGT-TGCAGCTTCCGTTTGGCTTTTATTATCCACAAGA-TTTGT 1352
||||||||||||||| || |||| ||||| ||| ||| | || || || |||| |||
Sbjct 700 GAGAGATTTGGACCG-AGTCTGCATCTTCCATTTTGCTCTGATGATGCAAAAGACAATGT 758
Query 1353 TCTCTTTATCTTGTGTCAGAGAAGAGCAGCTCGTGGTATTACATCAA-AGC-TGGATGGT 1410
| ||||||||||||| ||||| |||||||||| || ||||||||| | | |||| |
Sbjct 759 T-GCTTTATCTTGTGTTAGAGATGAGCAGCTCGCCGTGTTACATCAATA-CAAGGATATT 816
Query 1411 T-TCTGGCGAACTGGAGATTTGGATTACGAATAAGATTGATCCCGGTGTTGTCTCGTGGA 1469
| ||| | || |||| |||||| |||||||||||||||||||| || || |||||||
Sbjct 817 TGTCT-GATAA-TGGATATTTGGGTTACGAATAAGATTGATCCCAATGCAGTGTCGTGGA 874
Query 1470 CCAAGTTTTTGAGATCCA-T-CTCTTGTTGT-CGAATTAGTATC-C--AAGCTGGGAGTT 1523
||||||||||||| | | || ||| | || || | | | | ||| ||||||||
Sbjct 875 ACAAGTTTTTGAGA--AAGTGGGCTGGTTATCCG-GTT-G-A-CACTGAAGGTGGGAGTT 928
Query 1524 TCTTCATTAACGAGGAGAATCAA-GTGGCTGTGGTTTTCGATCTTGA-CGAATATAAAGG 1581
|||||||| ||||||||||| || || ||||||||||||||||| || | ||| ||||
Sbjct 929 TCTTCATTGACGAGGAGAAT-AATGTTGCTGTGGTTTTCGATCTAGACCAAAT-TAAACC 986
Query 1582 GAGTGAGACATGTCGCAACCAAACAGCTTACATTATCGGACAAGATGAATACTTCAAATC 1641
| || |||| | || ||||| || || | |||| ||| | |||||||||||
Sbjct 987 G-GT----CATG--G---CC--TCAGCTCACCTTGTTGGAC-AGA-G-GTACTTCAAATC 1031
Query 1642 TGTGAATATTGGGGAGGCTCCGAATCTCG--GAAGACCTGAGAA--AT--ATGCTCCACA 1695
||||||||| || | | || ||| ||| |||| ||| || | || | | |
Sbjct 1032 TGTGAATATCGGAAAAGTTCTTAATATCGTCGAAG--TTGACAAGTTTGGATTTTTTA-A 1088
Query 1696 CAT--A-TATTGTCGCCCACTTGTGTGCTCTTCTTATGTTCCAAGCTTAGTGCCGCTCCA 1752
| | ||| ||| |||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 1089 GGTGAATTATCGTCTCCCACTTGTGTGCTCTTCTTATGTTCCAAGTTTAGTGCCACTGCA 1148
Query 1753 AATCAACCAACC 1764
||||||||||||
Sbjct 1149 AATCAACCAACC 1160
> Ahg937320 jgi|Araly1|937320|scaffold_501511.1
Length=1211
Score = 187 bits (101), Expect = 2e-46
Identities = 522/713 (73%), Gaps = 78/713 (11%)
Strand=Plus/Plus
Query 1130 TCTAATTCATGAAAGAGTT-TTGATCTCACTTCCGACTGGTATATAGGGTCTAATAAACG 1188
||| ||| ||| ||| || ||| | ||||| |||| ||| | ||| |||| || ||||
Sbjct 502 TCTGATTTATGGAAGTTTTATTG-TGTCACTCCCGATTGGGAGATACCGTCTCATCAACG 560
Query 1189 TGGCGTGTCTTTCAAGGGAAATA-CATACATCTTGGCTCAAGGGAAAAT-A-A--GAGTG 1243
||| |||||||| |||||| ||| | || | |||| ||| | ||| || | | |||||
Sbjct 561 TGGTGTGTCTTTGAAGGGAGATAGC-TATTTTTTGGGTCATGAGAAGATAACAGTGAGTG 619
Query 1244 GA-TAGTA-----GATG-G-AAGATTGAGGCTATTTTACTCTCG-TTTGATTTTACAACT 1294
|| || | || | | |||||||| | || |||||||| | ||||||||||||| |
Sbjct 620 GAGGAGAAGGGGTGAGGAGAAAGATTGAAGATAGTTTACTCT-GTTTTGATTTTACAAGT 678
Query 1295 GAGAGATTTGGACCG---C-G-GT-TGCAGCTTCCGTTTGGCTTTTATTATCCACAAGA- 1347
||||||||||||||| | | | ||| ||| ||||| || |||| | || || |
Sbjct 679 GAGAGATTTGGACCGCCCCTGCCTCTGCCTCTTTCGTTTCACTCTTATCGTTCAGAA-AC 737
Query 1348 TTTGTTCTCTTTATCTTGTGTCAGAGAAGAGCAGCTCG-TG-GTATTACATCA-AAGCTG 1404
| || ||| | |||||||| |||| |||||||||| | || ||| | | | |||
Sbjct 738 TATG-ACTC--TGTCTTGTGTTGGAGAGGAGCAGCTCGCCGTGT-TTA-GTTACCACCTG 792
Query 1405 GATGGTT-TCTGGCG-A-ACTGGAGATTTGGATTACGAATAAGATTGATCCCGGTGTTGT 1461
|| || ||| ||| | | | ||||||||| ||||||||||| |||| ||| || ||
Sbjct 793 AAT--TTATCTAGCGTATA-T-GAGATTTGGGTTACGAATAAGCTTGAACCCAATGCGGT 848
Query 1462 CTCGTGGACCAAGTTTTTGAGATCCATCTC-TTGTTGTCGA-ATT-AGTATCCAAGCTGG 1518
|| |||| ||||||||||||||| || | | ||| || | || | || | |||||
Sbjct 849 GTCCTGGAGCAAGTTTTTGAGATCGTTC-CGTGGTTCTC-ATGTTCA-CATTGAGGCTGG 905
Query 1519 GAGTTTCTTCATTAACG-AGGAGAATCAAGTGGCTGTGGTTTTCGATCTTGACGAATATA 1577
|||||| |||||| ||| ||| ||| |||| ||||||||||| | || | | || || |
Sbjct 906 GAGTTTTTTCATTGACGAAGG-GAAGAAAGTTGCTGTGGTTTTTGGTC-T-A-GATTACA 961
Query 1578 AA-GGGAGTGAGACATGTCGCAACCAAACAGCTTACATTATCGGACAAGATGAATACTTC 1636
|| || |||||| ||| ||||||||||| |||| || ||||||| || |||||||
Sbjct 962 AATATGA-TGAGAC---TCGTTACCAAACAGCTCACATCATTGGACAAGGTGGATACTTC 1017
Query 1637 AAATCTGTGAATATTGGGGAGGCTCCGAATCTCGGAAGACCTGA-GAA--AT--A----T 1687
|||||||||||||| || || ||||||||||||| || || ||| || || | |
Sbjct 1018 AAATCTGTGAATATCGGAGAAGCTCCGAATCTCGCAAAACTTGACAAACCATACATGTTT 1077
Query 1688 -G-----CTCCACACATA-TATTGTCGCCCACTTGTGTGCTCTTCTTATGTTCCAAGCTT 1740
| |||| | | | |||||| |||| ||||||||||||||||||||||||||||
Sbjct 1078 GGATATACTCC-GAGAAAGTATTGTTACCCAGTTGTGTGCTCTTCTTATGTTCCAAGCTT 1136
Query 1741 AGTGCCGCTCCAAATCAACCAACCAG-ACACAAGG-AAAGAAAGCGATGATTA 1791
||| | || |||||||||||||| | | | |||| |||||| | ||| ||||
Sbjct 1137 AGTACAACTGCAAATCAACCAACCGGGA-A-AAGGGAAAGAACGTGATTATTA 1187
> Ahg478813 jgi|Araly1|478813|fgenesh2_kg.3__1514__AT3G14030.1
Length=672
Score = 187 bits (101), Expect = 2e-46
Identities = 196/240 (82%), Gaps = 13/240 (5%)
Strand=Plus/Plus
Query 1515 CTGGGAG-TTTCTTCATTAACGAGGAGAATCAAGTGGCTGTGGTTTTCGATCTTGACGAA 1573
||||||| |||||| ||| | || ||||| |||| || |||||||||||||| |||| |
Sbjct 424 CTGGGAGTTTTCTTTATTGATGACGAGAAGAAAGTCGCCGTGGTTTTCGATCTAGACGGA 483
Query 1574 TATAAAGGGAGTGAGACATGTCGCAACCAAACAGCTTACATTATCGGACAAGATGAATAC 1633
|||||| || ||||| |||||| ||||||||||| |||| || |||||| ||| ||||
Sbjct 484 TATAAAAAGACCGAGACTTGTCGCTACCAAACAGCTCACATCATTGGACAATATGGATAC 543
Query 1634 TTCAAATCTGTGAATATTGGGGAGGCTCCGAATCTC-GGAAGACCTG--AGA----AATA 1686
||||||||||||||||| | || |||||||||||| |||| ||||| ||| ||
Sbjct 544 TTCAAATCTGTGAATATCCGAGAAGCTCCGAATCTCGGGAA-ACCTGACAGATTTGGATT 602
Query 1687 TGCTC-CACACATATATTGTCG-CCCACTTGTGTGCTCTTCTTATGTTCCAAGCTTAGTG 1744
| ||| | | ||| |||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 603 TACTCTCTC-CATTTATTGT-GTCCCACTTGTGTGCTCTTCTTATGTTCCAAGTTTAGTG 660
> Ahg951995 jgi|Araly1|951995|scaffold_28600002.1
Length=555
Score = 178 bits (96), Expect = 1e-43
Identities = 195/241 (81%), Gaps = 13/241 (5%)
Strand=Plus/Plus
Query 1515 CTGGGAG-TTTCTTCATTAACGAGGAGAATCAAGTGGCTGTGGTTTTCGATCTTGACGAA 1573
||||||| |||||| ||| | || ||||| |||| || |||||||||||||| |||| |
Sbjct 297 CTGGGAGTTTTCTTTATTGATGACGAGAAGAAAGTCGCCGTGGTTTTCGATCTAGACGGA 356
Query 1574 TATAAAGGGAGTGAGACATGTCGCAACCAAACAGCTTACATTATCGGACAAGATGAATAC 1633
|||||| || ||||| |||||| ||||||||||| |||| || |||||| ||| ||||
Sbjct 357 TATAAAAAGACCGAGACTTGTCGCTACCAAACAGCTCACATCATTGGACAATATGGATAC 416
Query 1634 TTCAAATCTGTGAATATTGGGGAGGCTCCGAATCTC-GG-AA---GACCTGA---GAAAT 1685
||||||||||||||||| | || |||||||||||| || || |||| || | | |
Sbjct 417 TTCAAATCTGTGAATATCCGAGAAGCTCCGAATCTCGGGAAACCTGACCAGATTTGGATT 476
Query 1686 ATGCTC-CACACATATATTGTCG-CCCACTTGTGTGCTCTTCTTATGTTCCAAGCTTAGT 1743
| ||| | | ||| |||||| | |||||||||||||||||||||||||||||| |||||
Sbjct 477 TTACTCTCTC-CATTTATTGT-GTCCCACTTGTGTGCTCTTCTTATGTTCCAAGTTTAGT 534
Query 1744 G 1744
|
Sbjct 535 G 535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67267372670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5