BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13630.1
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476265 jgi|Araly1|476265|fgenesh2_kg.2__1395__AT3G13630.1 928 0.0
Ahg333411 jgi|Araly1|333411|fgenesh1_pm.C_scaffold_832000001 750 0.0
Ahg904270 jgi|Araly1|904270|Al_scaffold_0003_1398 688 0.0
> Ahg476265 jgi|Araly1|476265|fgenesh2_kg.2__1395__AT3G13630.1
Length=730
Score = 928 bits (502), Expect = 0.0
Identities = 593/636 (93%), Gaps = 10/636 (2%)
Strand=Plus/Plus
Query 48 AAAATCTTGTTTGTGTCTTTGTTGTACTAGAAAGAAAATGGAAGGTGGCGCTGAGGATCT 107
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAATCTTGTTTGTCTCTTTGTTGTACTAGAAAGAAAATGGAAGGTGGCGCTGAGGATCT 60
Query 108 GAGTGCTGAGATTGTTGGTCTATTAGAAACTGCTTATGAGAGGAGTGA-CTCGATGGA-C 165
||||| |||||||||||||||||| ||||| |||||||||||| |||| | |||| || |
Sbjct 61 GAGTGTTGAGATTGTTGGTCTATTGGAAACGGCTTATGAGAGGCGTGAGC-CGAT-GACC 118
Query 166 AAAATCCGTAATCAGCTTGAAAGAATGTCGGAGACTTTGGCCGAATCTGTGCCTCACTCA 225
||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 119 AAAATCCGTAAACAGCTTGAAAGAATGTCAGAGACTTTGGCCGAAGCTGTGCCTCACTCA 178
Query 226 AAATACGCGGAGGCCATTGTGAAGGGAATGCTTCTTGCTGTTCGAAGACGTGTAAACCTA 285
||||| ||||||||||||||||| ||||||||||||||||||| |||||||| |||||||
Sbjct 179 AAATATGCGGAGGCCATTGTGAAAGGAATGCTTCTTGCTGTTCAAAGACGTGCAAACCTA 238
Query 286 AACGAGCGCCTTAGCATCCAAGAAACCATCGATTTGGTTTTTGATGCATATGGTCCTATC 345
|||| || ||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 239 AACGTGCTCCTTAGCATCCAAGAAACCATCGATCAGGTTTTTGATACATATGGTCCTATC 298
Query 346 CTTATTCCATATGCCACCAGCAACACTACACAAATCCAAATCATAGAGTCTGTGGAGAAG 405
||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 299 CTTATTCAATATGCCACCAGCAAAACTACCCAAATCCAAATCATAGAGTCTGTGGAGAAG 358
Query 406 ATATGTCTTGAACCTCAGTCACC-TTTTTCCCCCGTTTTTGGT-ATTATAATCCAGACCT 463
||||||||||||||||||||||| |||||||| ||||||||| || |||||||||||||
Sbjct 359 ATATGTCTTGAACCTCAGTCACCATTTTTCCCT-GTTTTTGGTCAT-ATAATCCAGACCT 416
Query 464 TGTCACGCCATTGTGTAAATGTGGAAGCCATTGTTGATTGGGAAAAGCGTAGGAAAGCAG 523
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||
Sbjct 417 TGTCACGCCATTGTGTAAACGTGGAAGCCATTGTTGATTGGGAAGAGCGTAGGAAAGAAG 476
Query 524 CAAGAGAG-GAAGGAACTCTGTCTCAACAAGAGATGACTCTTCTGTGGAATATGGAACAT 582
|||||||| || |||| |||||||| ||||||||||| ||||||| ||||||||||| ||
Sbjct 477 CAAGAGAGAGA-GGAATTCTGTCTCCACAAGAGATGAATCTTCTGAGGAATATGGAAAAT 535
Query 583 ACCCAAATTGGTCCCACCGGTGGCATCCTTGAAGGATATGAGATTGGAAAAGGAAGCCAG 642
||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 536 ACCCAAAGTGGTCCTACCGGTGGCATCCTTGAAGGATTTGAGATTGGAAAAGGAAGCCAG 595
Query 643 GATGCTCGAGACATGGGCCTCTAAGTCCATTCACGT 678
|| |||||||||||||||||||||||||||||||||
Sbjct 596 GACGCTCGAGACATGGGCCTCTAAGTCCATTCACGT 631
> Ahg333411 jgi|Araly1|333411|fgenesh1_pm.C_scaffold_832000001
Length=573
Score = 750 bits (406), Expect = 0.0
Identities = 536/593 (90%), Gaps = 31/593 (5%)
Strand=Plus/Plus
Query 85 ATGGAAGGTGGCGCTGAGGATCTGAGTGCTGAGATTGTTGGTCTATTAGAAACTGCTTAT 144
|||||||||||||||||||||||||||| |||||||||||||||| | ||||| ||||||
Sbjct 1 ATGGAAGGTGGCGCTGAGGATCTGAGTGTTGAGATTGTTGGTCTACTGGAAACGGCTTAT 60
Query 145 GAGAGGAGTGA-CTCGATGGAC-AAAATCCGTAATCAGCTTGAAAGAATGTCGGAGACTT 202
|||||| |||| | |||| ||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 61 GAGAGGCGTGAGC-CGAT-GACGAAAATCCGTAAACAGCTTGAAAGAATGTCAGAGACTT 118
Query 203 TGGCCGAATCTGTGCCTCACTCAAAATACGCGGAGGCCATTGTGAAGGGAATGCTTCTTG 262
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 119 TGGCCGAAGCTGTGCCTCACTCAAAATATGCGGAGGCCATTGTGAAGGGAATGCTTCTTG 178
Query 263 CTGTTCGAAGACGTGTAAACCTAAACGAGCGCCTTAGCATCCAAGAAACCATCGATTTGG 322
|||||| |||||||| ||||||||||| || ||||||||||||||||||||||||| ||
Sbjct 179 CTGTTCAAAGACGTGCAAACCTAAACGTGCTCCTTAGCATCCAAGAAACCATCGATCAGG 238
Query 323 TTTTTGAT-GC---ATATGGTCCTATCCTTATTCCATATGCCACCAGCAACACTACACAA 378
|||||||| | |||||||||||||||||||||||||||||||||| | | | ||
Sbjct 239 TTTTTGATACCTATATATGGTCCTATCCTTATTCCATATGCCACCAGC-A-A--A-AC-T 292
Query 379 ATCCAAATCATAGAGTCTGTGGAGAAG--ATATGTCTTGAACCTCAGTCACC-TTTTTCC 435
| || | | | |||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 293 A-CC----C--A-A-TCTGTGGAGAAGATATATGTCTTGAACCTCAGTCACCATTTTT-C 342
Query 436 CCCGTTTTTGGT-ATTATAATCCAGACCTTGTCACGCCATTGTGTAAATGTGGAAGCCAT 494
|||||||||||| | |||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 343 CCCGTTTTTGGTGA-TATAATCCAGACATTGTCACGCCATTGTGTAAACGTGGAAGCCAT 401
Query 495 TGTTGATTGGGAAAAGCGTAGGAAAGCAGCAAGAGAG-GAAGGAACTCTGTCTCAACAAG 553
||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct 402 TGTTGATTGGGAAAAGCGTAGGAAAGCAGCAAGAGAGAGA-GGAACTCTGTCTCCACAAG 460
Query 554 AGATGACTCTTCTGTGGAATATGGAACATACCCAAATTGGTCCCACCGGTGGCATCCTTG 613
|||||| ||||||| ||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 461 AGATGAATCTTCTGAGGAATATGGAAAATACCCAAATTGGTCCTACCGGTGGCATCCTTG 520
Query 614 AAGGATATGAGATTGGAAAAGGAAGCCAGGATGCTCGAGACATGGGCCTCTAA 666
||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 521 AAGGATATGAGATTGGAAAAGGAAGCCAGGACGCTCGAGACATGGGACTCTAA 573
> Ahg904270 jgi|Araly1|904270|Al_scaffold_0003_1398
Length=564
Score = 688 bits (372), Expect = 0.0
Identities = 526/593 (89%), Gaps = 40/593 (7%)
Strand=Plus/Plus
Query 85 ATGGAAGGTGGCGCTGAGGATCTGAGTGCTGAGATTGTTGGTCTATTAGAAACTGCTTAT 144
|||||||||||||||||||||||||||| |||||||||||||||| | ||||| ||||||
Sbjct 1 ATGGAAGGTGGCGCTGAGGATCTGAGTGTTGAGATTGTTGGTCTACTGGAAACGGCTTAT 60
Query 145 GAGAGGAGTGA-CTCGATGGAC-AAAATCCGTAATCAGCTTGAAAGAATGTCGGAGACTT 202
|||||| |||| | |||| ||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 61 GAGAGGCGTGAGC-CGAT-GACGAAAATCCGTAAACAGCTTGAAAGAATGTCAGAGACTT 118
Query 203 TGGCCGAATCTGTGCCTCACTCAAAATACGCGGAGGCCATTGTGAAGGGAATGCTTCTTG 262
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 119 TGGCCGAAGCTGTGCCTCACTCAAAATATGCGGAGGCCATTGTGAAGGGAATGCTTCTTG 178
Query 263 CTGTTCGAAGACGTGTAAACCTAAACGAGCGCCTTAGCATCCAAGAAACCATCGATTTGG 322
|||||| |||||||| |||||| || | | |||||||||||||||||||| ||
Sbjct 179 CTGTTCAAAGACGTGCAAACCT-AA--A----C---GCATCCAAGAAACCATCGATCAGG 228
Query 323 TTTTTGATGC----ATATGGTCCTATCCTTATTCCATATGCCACCAGCAACACTACACAA 378
|||||||| | |||||||||||||||||||||||||||||||||| | | | ||
Sbjct 229 TTTTTGATACATATATATGGTCCTATCCTTATTCCATATGCCACCAGC-A-A--A-AC-T 282
Query 379 ATCCAAATCATAGAGTCTGTGGAGAAG--ATATGTCTTGAACCTCAGTCACC-TTTTTCC 435
| || | | |||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 283 A-CC----C--A-AGTCTGTGGAGAAGATATATGTCTTGAACCTCAGTCACCATTTTT-C 333
Query 436 CCCGTTTTTGGT-ATTATAATCCAGACCTTGTCACGCCATTGTGTAAATGTGGAAGCCAT 494
|||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 334 CCCGTTTTTGGTGA-TATAATCCAGACCTTGTCACGCCATTGTGTAAACGTGGAAGCCAT 392
Query 495 TGTTGATTGGGAAAAGCGTAGGAAAGCAGCAAGAGAG-GAAGGAACTCTGTCTCAACAAG 553
||||||||||||| |||||||||||| |||||||||| || |||| |||||||| |||||
Sbjct 393 TGTTGATTGGGAAGAGCGTAGGAAAGAAGCAAGAGAGAGA-GGAATTCTGTCTCCACAAG 451
Query 554 AGATGACTCTTCTGTGGAATATGGAACATACCCAAATTGGTCCCACCGGTGGCATCCTTG 613
|||||| ||||||| ||||||||||| ||||||||| |||||| ||||||||||||||||
Sbjct 452 AGATGAATCTTCTGAGGAATATGGAAAATACCCAAAGTGGTCCTACCGGTGGCATCCTTG 511
Query 614 AAGGATATGAGATTGGAAAAGGAAGCCAGGATGCTCGAGACATGGGCCTCTAA 666
|||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 512 AAGGATTTGAGATTGGAAAAGGAAGCCAGGACGCTCGAGACATGGGCCTCTAA 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29964612762
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5