BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13640.1
Length=2197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952522 jgi|Araly1|952522|scaffold_83200001.1 1221 0.0
Ahg929108 jgi|Araly1|929108|scaffold_301565.1 244 2e-63
Ahg325255 jgi|Araly1|325255|fgenesh1_pm.C_scaffold_6000475 130 5e-29
Ahg945962 jgi|Araly1|945962|scaffold_702191.1 100 4e-20
> Ahg952522 jgi|Araly1|952522|scaffold_83200001.1
Length=721
Score = 1221 bits (661), Expect = 0.0
Identities = 701/721 (97%), Gaps = 0/721 (0%)
Strand=Plus/Plus
Query 1207 TCACAGACTCTCAGATTATCGTAATGCTTGGAGAGAATGGTACAGGGAAAACGACCTTCA 1266
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 TCACAGACTCTCAGATTATCGTTATGCTTGGAGAGAATGGTACAGGGAAAACGACCTTCA 60
Query 1267 TCCGGATGCTGGCAGGCGCATTCCCACGTGAAGAGGGTGTACAATCGGAGATTCCAGAGT 1326
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 TCCGGATGCTGGCAGGCGTATTCCCACGTGAAGAGGGTGTAGAATCGGAGATTCCAGAGT 120
Query 1327 TTAATGTGTCGTACAAACCGCAAGGGAATGATTCGAAGCGCGAGTGTACAGTGAGACAGT 1386
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTAATGTGTCGTACAAACGGCAAGGGAATGATTCGAAGCGCGAGTGTACAGTGAGACAGT 180
Query 1387 TGCTACATGACAAGATTCGTGATGCATGCGCACATCCTCAGTTTATGTCAGATGTAATAA 1446
|||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 181 TGCTACATGAAAAGATTCGTGATGCATATACACATCCTCAGTTTGTGTCAGATGTAATAA 240
Query 1447 GACCGCTTCAGATTGAGCAGTTGATGGACCAAGTGGTAAAAACTCTGTCTGGTGGAGAGA 1506
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 241 GACCGCTTCAGATTGAGCAGTTGTTGGACCAAGTGGTAAAAACTCTTTCTGGTGGAGAGA 300
Query 1507 AGCAGAGGGTTGCCATTACTCTATGCCTTGGGAAGCCTGCTGATATCTATCTGATTGACG 1566
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 301 AGCAGAGGGTTGCCATTACTCTATGCCTCGGGAAGCCCGCTGATATCTATCTGATTGACG 360
Query 1567 AGCCAAGTGCGCATTTGGACTCAGAGCAGCGGATCACAGCTTCAAAGGTCATAAAACGGT 1626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGCCAAGTGCGCATTTGGACTCAGAGCAGCGGATCACAGCTTCAAAGGTCATAAAACGGT 420
Query 1627 TCATCCTGCACGCAAAGAAAACCGCGTTTATTGTGGAGCATGACTTCATAATGGCAACCT 1686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCATCCTGCACGCAAAGAAAACCGCGTTTATTGTGGAGCATGACTTCATAATGGCAACCT 480
Query 1687 ATCTTGCGGACCGAGTCATTGTGTACGAAGGACAGCCAGCTGTCAAGTGTATTGCTCATT 1746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATCTTGCGGACCGAGTCATTGTGTACGAAGGACAGCCAGCTGTCAAGTGTATTGCTCATT 540
Query 1747 CTCCACAGTCGCTGCTCAGTGGAATGAACCACTTCCTATCGCACTTGAACATCACATTCA 1806
||||||||||||||||||| |||||||||| |||| ||||||||||||| ||||||||||
Sbjct 541 CTCCACAGTCGCTGCTCAGCGGAATGAACCTCTTCTTATCGCACTTGAATATCACATTCA 600
Query 1807 GACGGGATCCGACTAACTTCAGGCCAAGGATAAACAAACTAGAGTCCATCAAGGACAAGG 1866
|||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 601 GACGGGATCCCACTAATTTCAGGCCGAGGATAAACAAACTAGAGTCCATCAAGGACAAGG 660
Query 1867 AGCAAAAGACTGCAGGATCATACTACTACTTAGACGATTGATTGATCGGTCAGAGAGAGA 1926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGCAAAAGACTGCAGGATCATACTACTACTTAGACGATTGATTGATCGGTCAGAGAGAGA 720
Query 1927 T 1927
|
Sbjct 721 T 721
> Ahg929108 jgi|Araly1|929108|scaffold_301565.1
Length=250
Score = 244 bits (132), Expect = 2e-63
Identities = 180/204 (88%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 1713 GAAGGACAGCCAGCTGTCAAGTGTATTGCTCATTCTCCACAGTCGCTGCTCAGTGGAATG 1772
|||| ||| ||| || |||||||||| ||||||||| |||||| || ||||||| ||||
Sbjct 36 GAAGAACAACCATCTATCAAGTGTATGGCTCATTCTTTACAGTCACTACTCAGTGAAATG 95
Query 1773 AACCACTTCCTATCGCACTTGAACATCACATTCAGACGGGATCCGACTAACTTCAGGCCA 1832
|||| |||| |||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 96 AACCTCTTCTTATCGCACTTGAACATCACATTTAGAAGGGATCCGACTAACTTCAGGCCA 155
Query 1833 AGGATAAACAAACTAGAGTCCATCAAGGACAAGGAGCAAAAGACTGCAGGATCATACTAC 1892
||||| |||||| ||||||||| ||| |||| ||| |||||| ||||||| |||||||||
Sbjct 156 AGGATCAACAAATTAGAGTCCACCAAAGACAGGGAACAAAAGTCTGCAGGCTCATACTAC 215
Query 1893 TACTTAGACGATTGATTGATCGGT 1916
||||| ||||| ||||||||||||
Sbjct 216 TACTTGGACGACTGATTGATCGGT 239
> Ahg325255 jgi|Araly1|325255|fgenesh1_pm.C_scaffold_6000475
Length=1479
Score = 130 bits (70), Expect = 5e-29
Identities = 112/132 (85%), Gaps = 4/132 (3%)
Strand=Plus/Plus
Query 1140 AGATACAAATACCCAAATATGACTA-AGCAACTTGGAGATTTCAAGCTGGAAGTGATGGA 1198
||||||||||| || || |||| || | | |||||||||||||||||||||||||||||
Sbjct 733 AGATACAAATATCCGAACATGAGTATAAC-CCTTGGAGATTTCAAGCTGGAAGTGATGGA 791
Query 1199 AGGGGAGTTCACAGACTCTCAGATTATC-GTAATGCTTGGAGAGAATGGTACAGGGAAAA 1257
||||||||||||||||| |||| || || ||| |||| ||||||| ||| ||||||| |
Sbjct 792 AGGGGAGTTCACAGACTGTCAGGTT-TCTGTAGTGCTGGGAGAGAGCGGTTCAGGGAAGA 850
Query 1258 CGACCTTCATCC 1269
| |||||| |||
Sbjct 851 CCACCTTCCTCC 862
> Ahg945962 jgi|Araly1|945962|scaffold_702191.1
Length=2647
Score = 100 bits (54), Expect = 4e-20
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 380 CAGGCTTCCAATTCCACGGCCGGGGCAAGTCCTTGGGTTGGTTGGAACAAATGGTATTGG 439
|||||| ||| ||||| |||||||||| || || ||||||||||||||||||||||||||
Sbjct 758 CAGGCTCCCAGTTCCAAGGCCGGGGCAGGTGCTAGGGTTGGTTGGAACAAATGGTATTGG 817
Query 440 AAAATCTACTGCTCT 454
|||||| ||||||||
Sbjct 818 AAAATCAACTGCTCT 832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82693921895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5