BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13650.1
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929111 jgi|Araly1|929111|scaffold_301568.1 846 0.0
Ahg949367 jgi|Araly1|949367|scaffold_801254.1 187 1e-46
> Ahg929111 jgi|Araly1|929111|scaffold_301568.1
Length=572
Score = 846 bits (458), Expect = 0.0
Identities = 509/534 (95%), Gaps = 1/534 (0%)
Strand=Plus/Plus
Query 213 GCCGTTGTTTCCGCCCGTAAAGGCGAAAACTTTGCAAAAACCATTGACAAAAAACATTTT 272
|||||||| |||||| | |||||| ||||||||||||||||||||||||||||||| ||
Sbjct 37 GCCGTTGTCTCCGCCGGAAAAGGC-AAAACTTTGCAAAAACCATTGACAAAAAACACTTC 95
Query 273 GGCCTCCGTAAGGAGAAACTCACTCATTTCCGTGTCTACTGGCACGACATTTTAAGCGGC 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 GGCCTCCGTAAGGAGAAACTCACTCATTTCCGTGTCTACTGGCACGACATTTTAAGCGGC 155
Query 333 TCAAACCCTAGTTCGGTCGTGATCAACCCTCCTATCTCCAACTCTTCCTTCTTCGGATCG 392
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 156 TCAAACCCTAGCTCGGTCGTGATCAACCCTCCTATCTCAAACTCTTCCTTCTTCGGCGCG 215
Query 393 GTCACTGTGATCGATAACCGATTAACTACGGAGGTCGCGGTGAATTCGACTTTAGTGGGA 452
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 216 GTCACTGTGATCGACAACCGATTAACTACGGAGGTGGCGGTGAATTCGACTTTAGTGGGA 275
Query 453 CAAGCGCAAGGGATCTACGCTGCTACTGGTCAACGTGATGCATCTGCGCTTATGGTGATG 512
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 276 CAGGCGCAAGGGATCTACGCTGCTACTGGTCAACGTGATTTGTCTGCGCTTATGGTGATG 335
Query 513 AACTTTGCGTTCAAGACAGGGAAGTATAACGGAAGTTCGATCGCGATTCTTGGCCGGAAC 572
||||| |||||||||||||||||||||||||||||| ||||| |||||||||| ||||||
Sbjct 336 AACTTCGCGTTCAAGACAGGGAAGTATAACGGAAGTACGATCACGATTCTTGGTCGGAAC 395
Query 573 GCTGTGTTGACCAAGGTTAGGGAGATGCCGGTGATTGGAGGAAGTGGACTCTTCCGGTTT 632
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 GCTGTGTTGACCAAGGTTAGGGAGATGCCGGTGATTGGAGGAAGTGGACTCTTCCGGTTC 455
Query 633 GCTAGAGGTTATGTCGAGGCTCGGACCATGTGGTTTGATCAAAAGTCAGGAGATGCTACT 692
||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||
Sbjct 456 GCTAGAGGTTATGTCGAAGCTCGTACCATGTGGTTTGATCTAAAGTCAGGAGATGCTACT 515
Query 693 GTTGAGTACAGCTGTTATGTCTTGCATTATTGATGATAGTGATGAATTATTATG 746
|| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 GTGGAGTACAGCTGTTATGTCTTGCATTATTGATGATAGTGATGAATTATTATG 569
> Ahg949367 jgi|Araly1|949367|scaffold_801254.1
Length=295
Score = 187 bits (101), Expect = 1e-46
Identities = 172/206 (83%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 525 AAGACAGGGAAGTATAACGGAAGTTCGATCGCGATTCTTGGCCGGAACGCTGTGTTGA-C 583
||||| || |||||||| || ||| | ||| ||||||||| || || | ||||| | |
Sbjct 75 AAGACTGGTAAGTATAATGGGAGTACCATCATGATTCTTGGTCGTAATACGGTGTT-ATC 133
Query 584 CAAGGTTAGGGAGATGCCGGTGATTGGAGGAAGTGGACTCTTCCGGTTTGCTAGAGGTTA 643
|||||||||||||||||| ||| ||||||| |||||| | ||||||||||||||||||||
Sbjct 134 CAAGGTTAGGGAGATGCCAGTGGTTGGAGGCAGTGGAATGTTCCGGTTTGCTAGAGGTTA 193
Query 644 TGTCGAGGCTCGGACCATGTGGTTTGATCAA-AAGTCAGGAGATGCTACTGTTGAGTACA 702
||||||||||| ||||| ||||||||| | ||| | || || |||||||||||||| |
Sbjct 194 TGTCGAGGCTCAGACCAAATGGTTTGAT-ATTAAGACTGGTGACGCTACTGTTGAGTATA 252
Query 703 -GCTGTTATGTCTTGCATTATTGATG 727
| |||||| ||||||||||||||||
Sbjct 253 AG-TGTTATATCTTGCATTATTGATG 277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36445508652
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5