BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13660.1
Length=679
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478757 jgi|Araly1|478757|fgenesh2_kg.3__1458__AT3G13660.1 946 0.0
Ahg474578 jgi|Araly1|474578|fgenesh2_kg.1__4532__AT1G55210.1 267 1e-70
> Ahg478757 jgi|Araly1|478757|fgenesh2_kg.3__1458__AT3G13660.1
Length=579
Score = 946 bits (512), Expect = 0.0
Identities = 560/583 (96%), Gaps = 4/583 (1%)
Strand=Plus/Plus
Query 26 AATAAAATAATTAGGTAACCAAACATGCCAAACCTCATCCTCATCCTCGCCGCTCAAATC 85
||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 AATAAAATAATTAAGTAATCAAACATGTCAAACCTCATCCTCATCCTCGCCGCTCAAATC 60
Query 86 CTCCTCTTTACCACCGTTGCCTCCGTTGGAGATTTTGCTAAAGAAATGAACCCGAAAAGG 145
|||||||||||| ||||||| |||| ||||||||||||||||||||||||||| ||||||
Sbjct 61 CTCCTCTTTACCGCCGTTGCTTCCGCTGGAGATTTTGCTAAAGAAATGAACCCAAAAAGG 120
Query 146 TTCCACAAGAAGGAGAAACTCACCCATCTCCGAGTCTATTGGCACGACATCTTAAGCGGT 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCCACAAGAAGGAGAAACTCACCCATCTCCGAGTCTATTGGCACGACATCTTAAGCGGT 180
Query 206 CAAAACCCTAGCTACTGCCATCATGATTCAGAAGGCGGTTTCAAACTCCTCAACCTCCTT 265
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAAAACCCTA-CT---GCCATCATGATTCAGAAGGCGGTTTCAAACTCCTCAACCTCCTT 236
Query 266 CGGATCAATCACAATGACGGACAACGCACTAACATCTGATGTGCCCGTTAACTCGACTGT 325
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CGGATCAATCACAATGATGGACAACGCACTAACATCTGATGTGCCCGTTAACTCGACTGT 296
Query 326 GGTAGGCCAGTCCCAAGGTTTTTACGCTGGAGCGGCCCAACGTGAGCTAGGCTTCTTGAT 385
|||||||||| |||||||||||||||| |||||||| ||||||||| | |||||||||||
Sbjct 297 GGTAGGCCAGGCCCAAGGTTTTTACGCCGGAGCGGCTCAACGTGAGTTGGGCTTCTTGAT 356
Query 386 GGCGATGAATTTCGCTTTCAAAACAGGGAAGTACAATGGGAGTACGATCACAATTCTTGG 445
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 357 GGCGATGAATTTCGCTTTCAAGACAGGGAAGTACAACGGGAGTACGATCACAATTCTTGG 416
Query 446 CCGGAACACGGTGTTCTCGAAGGTTAGGGAAATGACGGTGGTCGGAGGAAGTGGAATCTT 505
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 417 CCGGAACACGGTATTCTCGAAGGTTAGGGAAATGCCGGTGGTCGGAGGAAGTGGAGTCTT 476
Query 506 CCGGTTAGCTAGAGGTTATGTCGAGGCTAGGACTAAGTGGTTCGATCCTAAGACAGGAGA 565
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 477 CCGGTTAGCTAGAGGTTATGTCGAGGCTAGGACTAAGTGGTTCGATCCAAAGACAGGAGA 536
Query 566 CGCCACTGTTGAATACAATTGTTATGTCTTGCATTACTGATAT 608
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CGCCACTGTTGAATACAATTGTTATGTCTTGCATTACTGATAT 579
> Ahg474578 jgi|Araly1|474578|fgenesh2_kg.1__4532__AT1G55210.1
Length=824
Score = 267 bits (144), Expect = 1e-70
Identities = 370/475 (78%), Gaps = 32/475 (7%)
Strand=Plus/Plus
Query 144 GGT-TCCACAAGAAGGAGAAACTCACCCATCTCCGAGTCTATTGGCACGACATCTTAAGC 202
||| ||||||| ||||||||||| |||||| || |||||||||||||||||||||||||
Sbjct 180 GGTCTCCACAAAAAGGAGAAACTAACCCATTTCAAAGTCTATTGGCACGACATCTTAAGC 239
Query 203 GGTCAAAACCCTAGCTACTGCCATCATGATTCAGA-AGGCGGTTTCAAACTCCTCA-ACC 260
|||| ||||| | | || |||||||||| ||| | ||||| ||||| | ||| ||
Sbjct 240 GGTCCGAACCCAA-C--CT-CCATCATGATCCAGCCAC-CGGTTACAAACACTTCATAC- 293
Query 261 TCCTTCGGATCAATCACAATGA-CGGACAACGCACTAACATCTGATGTGCCCGTT-AACT 318
| || ||| | ||| | |||| || ||||||| | || | | || || ||| ||||
Sbjct 294 T--TT-GGAGCTATCTCCATGATCG-ACAACGCTTTGACGGCCAAGGTTCC-GTTGAACT 348
Query 319 CGACTGTGGTAGGCCA-GTCCCAAGGTTTTTACGCTGGAGCGGCCCAAC-GTGAGCTAGG 376
| || ||| | ||||| | ||||||| |||||||| |||||||||||| | ||| | ||
Sbjct 349 CCACGGTGTTGGGCCAAG-CCCAAGGGTTTTACGCCGGAGCGGCCCAAAAG-GAGTTGGG 406
Query 377 CTT-CTTGATGGCGATGAA-TTTCGCTTTCAAAACAGGGAAGTACAATGGGAGTACGATC 434
|| || |||||||||||| ||| ||||| || |||||||| || || || |||||||||
Sbjct 407 TTTTCT-GATGGCGATGAACTTT-GCTTTTAAGACAGGGAAATATAACGGAAGTACGATC 464
Query 435 ACAATTCTTGGCCGGAACACGGTGTTCTC-GAAGGTTAGGGAAATGACGGTGGTCGGAGG 493
|| |||||||| ||||||||| ||| || |||| | || |||||| || | ||||||||
Sbjct 465 ACGATTCTTGGTAGGAACACGGCGTTGTCAGAAG-TCAGAGAAATGCCGATCGTCGGAGG 523
Query 494 AAGTGGAATCTTCCGGTTAGCTAGAGGTTATGTCGAGGCTAGGACTAAGTGG-TTCGATC 552
|||||| | ||||| || |||||||| ||||| ||||||||||| |||||| || |||
Sbjct 524 AAGTGGGCTTTTCCGATTTGCTAGAGGGTATGTTGAGGCTAGGACAAAGTGGGTTA-ATC 582
Query 553 -CTAAGA-CAGGAGACGCCACTGTTGAATACAATTGTTATGTCTTGCATTACTGA 605
| |||| | || || |||||||| || | |||||| || |||||||| |||
Sbjct 583 TC-AAGAACCTT-GATGCTACTGTTGAGTATAGTTGTTACGTGTTGCATTATTGA 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24932387718
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5