BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13662.1
Length=550
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318143 jgi|Araly1|318143|fgenesh1_pm.C_scaffold_3001159 649 0.0
Ahg478757 jgi|Araly1|478757|fgenesh2_kg.3__1458__AT3G13660.1 335 2e-91
> Ahg318143 jgi|Araly1|318143|fgenesh1_pm.C_scaffold_3001159
Length=477
Score = 649 bits (351), Expect = 0.0
Identities = 438/478 (92%), Gaps = 13/478 (3%)
Strand=Plus/Plus
Query 85 ATGAACGGGAAACACCTTGGCCCTTACAAAAAGGAGAAACTCACTCATCTCCGAGTCTAT 144
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAACGGGAAACACCTTGGCCCTTACAAAAAGGAGAAACTCACTCACCTCCGAGTCTAT 60
Query 145 TGGCACAACTCTGTAAACGGTAGAAACCCTAGCTCCGTGATGATCCAACAGCCGGTCTTG 204
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TGGCACAACTCCGTAAACGGTAGAAACCCTAGCTCCGTCATGATCCAACAGCCGGTCTTG 120
Query 205 AACTC-T-T-CCTTATCCGGATCGATCACCATGATGGACGATCCACTAACATTCGATGTG 261
||||| | | |||||| |||| |||||||||||||||||||||||| ||||| ||||||
Sbjct 121 AACTCATCTTCCTTATTCGGAGAGATCACCATGATGGACGATCCACTGACATTAGATGTG 180
Query 262 CCAAGGAATGCGACTGTGGTGGGCCAAGCCCAAGGGATGTACGTAGCAGCGGCCCAAGGA 321
||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 CCAAGGAATTCAACTGTGGTGGGCCAAGCCCAAGGGATGTACGCAGCAGCGGCCCAAGGA 240
Query 322 GAGATAGGCTTCTTGATGGTGATGAACTTTGCTTTCACTACGGGGAAGTACAATGGGAGT 381
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 241 GAGATTGGCTTCTTGATGGTGATGAACTTTGCTTTCACTACAGGGAAGTACAACGGGAGT 300
Query 382 ACGATAACGATTCTTGGGCGGAACGTGGTGATGTCGAAGGTTAGGGAAATGCCGGTGGTC 441
||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 301 ACGATCACGATTCTTGGCCGGAACGTGGTGATGTCGAAGGTTAGAGAAATGCCAGTGGTC 360
Query 442 GGAGGTAGTGGAATCTTTCGATTTGCTAGAGGTTATGTCGAGGCTCGCACCAAGTCGTTT 501
||||| |||||||||||||| |||||||||||||| || |||||| |||||||||||||
Sbjct 361 GGAGGCAGTGGAATCTTTCGGTTTGCTAGAGGTTACGTGGAGGCTTGCACCAAGTCGTTC 420
Query 502 GATCTCAAGGCCGGT-T-G---TTGA--A-TATAATTGTTATATTCT-GCATTACTGA 550
|||| ||| |||||| | | ||| | |||||||||||||| || ||||||||||
Sbjct 421 GATCCCAAAGCCGGTGTAGCCATTGTTGAGTATAATTGTTATAT-CTTGCATTACTGA 477
> Ahg478757 jgi|Araly1|478757|fgenesh2_kg.3__1458__AT3G13660.1
Length=579
Score = 335 bits (181), Expect = 2e-91
Identities = 414/520 (80%), Gaps = 41/520 (8%)
Strand=Plus/Plus
Query 7 AACCTCATCCTTATCTTCGCCGCACAAATCCTCCTTTTCTA-TGCCGTTGCTTCCGTC-G 64
||||||||||| ||| ||||||| ||||||||||| || || ||||||||||||| | |
Sbjct 31 AACCTCATCCTCATCCTCGCCGCTCAAATCCTCCTCTT-TACCGCCGTTGCTTCCG-CTG 88
Query 65 GAGATGAATTG-GGAAGAACCATGAACGGGAAACACCTTGGCCCTTACAAAAAGGAGAAA 123
||||| ||| ||||| |||||| ||| | || || |||| |||||||||
Sbjct 89 GAGAT--TTTGCTAAAGAA--ATGAAC-CCAAAAAGGTT---CC--ACAAGAAGGAGAAA 138
Query 124 CTCACTCATCTCCGAGTCTATTGGCACAAC-TCTGTAAACGGT-AGAAACCCTAGCT-CC 180
||||| ||||||||||||||||||||| || ||| ||| |||| | |||||||| || ||
Sbjct 139 CTCACCCATCTCCGAGTCTATTGGCACGACATCT-TAAGCGGTCA-AAACCCTA-CTGCC 195
Query 181 GTGATGATCCA-ACAGCCGGTCTT-GAACT-CT--TCCTTATCCGGATCGATCACCATGA 235
| ||||| || | || |||| || |||| || ||| | |||||| ||||| ||||
Sbjct 196 ATCATGATTCAGA-AGGCGGT-TTCAAACTCCTCAACCTCCTTCGGATCAATCACAATGA 253
Query 236 TGGACGATC-CACTAACATTC-GATGTGCCAAG-GAA-TGCGACTGTGGTGGGCCAAGCC 291
||||| | | |||||||| || |||||||| | || | |||||||||| ||||| |||
Sbjct 254 TGGAC-AACGCACTAACA-TCTGATGTGCC-CGTTAACT-CGACTGTGGTAGGCCAGGCC 309
Query 292 CAAGGGATGTACGTAGCAGCGGCCCAAGGAGAGATAGGCTTCTTGATGGTGATGAACTTT 351
||||| | |||| | |||||| ||| | ||| | ||||||||||||| |||||| |||
Sbjct 310 CAAGGTTTTTACGCCGGAGCGGCTCAACGTGAGTTGGGCTTCTTGATGGCGATGAA-TTT 368
Query 352 -GCTTTCACTACGGGGAAGTACAATGGGAGTACGATAACGATTCTTGGGCGGAACGTGGT 410
||||||| || ||||||||||| ||||||||||| || |||||||| |||||| |||
Sbjct 369 CGCTTTCAAGACAGGGAAGTACAACGGGAGTACGATCACAATTCTTGGCCGGAACACGGT 428
Query 411 GA-TGTCGAAGGTTAGGGAAATGCCGGTGGTCGGAGGTAGTGGAATCTTTCGATTTGCTA 469
| | |||||||||||||||||||||||||||||||| |||||| |||| || || ||||
Sbjct 429 -ATTCTCGAAGGTTAGGGAAATGCCGGTGGTCGGAGGAAGTGGAGTCTTCCGGTTAGCTA 487
Query 470 GAGGTTATGTCGAGGCTCGCACCAAGTCGTTTGATCTCAA 509
||||||||||||||||| | || |||| ||| |||| |||
Sbjct 488 GAGGTTATGTCGAGGCTAGGACTAAGTGGTTCGATC-CAA 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20069839814
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5