BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13672.2
Length=1662
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904276 jgi|Araly1|904276|Al_scaffold_0003_1404 905 0.0
Ahg478759 jgi|Araly1|478759|fgenesh2_kg.3__1460__AT3G13670.1 490 1e-137
> Ahg904276 jgi|Araly1|904276|Al_scaffold_0003_1404
Length=678
Score = 905 bits (490), Expect = 0.0
Identities = 619/679 (91%), Gaps = 17/679 (3%)
Strand=Plus/Plus
Query 22 ATGGAACCTCGAATCAATGACCTTCAGGTGGAATCTCGGGTTCATGAGTTGCTCGATTTT 81
||||||||||||||||||||||||||| | |||||||||||||||| |||||| ||||||
Sbjct 1 ATGGAACCTCGAATCAATGACCTTCAGATTGAATCTCGGGTTCATGCGTTGCTTGATTTT 60
Query 82 CCGGTTCATACAAACCAGATATCCTCTGCAATCTACGAGATCCTATTGCAGTGT-C---C 137
||||||| |||||||||||| |||||||||| ||| |||||||||| |||||| | |
Sbjct 61 CCGGTTCGTACAAACCAGATGCCCTCTGCAATTTACCAGATCCTATTACAGTGTCCGAAC 120
Query 138 --C-A-A-C---GA-C-C-ACATCGAAAACCCTAAGAAGAAACCGTACAATTGTCCACAC 186
| | | | || | | |||| || ||| | ||||||||||| ||||| |||||| ||
Sbjct 121 GACGATACCGAAGAGCTCAACATTGAGAACTCAAAGAAGAAACCATACAAGTGTCCATAC 180
Query 187 TCAGGAGCCAAGTGTGATGTCACAGGAGATATTCAAAGGCTACTACTGCATCTAAGGAAT 246
||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||
Sbjct 181 TCAGGAGCCAAGTGTAATGTCACAGGAGATATTCAAAGGCTGCTTCTGCATCTAAGGAAT 240
Query 247 GATCACAATGTTGAAATG-AGTGATGGGCGTAGTTTCAGTCACAGATATGTTCATCATGA 305
|||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| |
Sbjct 241 GATCACAATGTTGAAATGCA-TGATGGGCGTAGTTTCAGTCATAGATATGTTCATCATAA 299
Query 306 TCCTAAACATCTTCATCATGCTACTTGGATGTTAACACTTCTCGATTGTTGTGGTCGAAA 365
||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||| |
Sbjct 300 TCCTAAACATCTTCATCATGCTACTTGTATGTTAACCCTTCTCGATTGTTTTGGTCGACA 359
Query 366 ATTCTGCTTGTACTTCGAAGCGTTTCACCTGAGGAAAACACCAATGTACATGGCCTTCAT 425
||||||||| ||||||||||| ||||||||||||||||||||||||||||| || || ||
Sbjct 360 ATTCTGCTTATACTTCGAAGCATTTCACCTGAGGAAAACACCAATGTACATAGCATTTAT 419
Query 426 GCAGTTTATGGGAGATGAAGAAGAGGCAATGAGCTTCAGCTATAGTTTGCAGGTCGGAGG 485
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||
Sbjct 420 GCAGTTTATGGGAGATGAAGAAGAAGCAATGAGCTTCAGCTATAGTTTGGAGGTCGGTGG 479
Query 486 GAATGGCAGAAAGCTGACATGGCAAGGCGTGCCGAGGAGCATTCGTGACAGTCACAAGAC 545
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 480 CAATGGCAGAAAGCTGACATGGCAAGGCGTGCCGAGGAGCATTTGTGACAGTCACAAGAC 539
Query 546 GGTTCGTGATAGTCAAGATGGCTTAATCATCACTCGCAAATTGGCTTTGTTCTTCTCTAC 605
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 540 GGTTCGTGATAGTCAAGATGGCTTAATCATCACTCGCAAATTGGCTTCGTTCTTCTGTAC 599
Query 606 CGACAACAACACCACCGACAAGGAGCTGAAGTTGAAGGTTTCAGGTCGTGTATGGAGAGA 665
|||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 600 CGACAACAACACCACCAACAAGGAACTGAAGTTGAAGGTTTCAGGCCGTGTATGGAGAGA 659
Query 666 ACAGCCTGTTTCGATATGA 684
||||||| ||||| |||||
Sbjct 660 ACAGCCTATTTCGTTATGA 678
> Ahg478759 jgi|Araly1|478759|fgenesh2_kg.3__1460__AT3G13670.1
Length=2608
Score = 490 bits (265), Expect = 1e-137
Identities = 320/344 (93%), Gaps = 13/344 (4%)
Strand=Plus/Minus
Query 716 TATAGAATATTTGGTGACAAAAATATCTTTTCTTGATTT-AAAAATTAAATATAGCAATT 774
||||||||||||||| ||||||||||||||||||||||| ||||||| || |||||||||
Sbjct 2608 TATAGAATATTTGGTAACAAAAATATCTTTTCTTGATTTAAAAAATT-AA-ATAGCAATT 2551
Query 775 TCGAGGGAAATGTGTAGGTAAACTGGTGATTA--TGGCTCAATCCCCTTCACAAGGGG-G 831
| ||||||||||||||| ||| |||||||||| ||||||||| ||||||||||||| |
Sbjct 2550 TAGAGGGAAATGTGTAGCTAATCTGGTGATTATGTGGCTCAAT--CCTTCACAAGGGGAG 2493
Query 832 -GAATAAACAACACAATCACCACATTTTTGCTTCACAATTCAACTGaaaaaaaaGAAGAA 890
|||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||
Sbjct 2492 AGAATAAACAACACAATCACCACTTTTTTGCTTCACAATTCAACTG-AAAAAAA-AAGAA 2435
Query 891 GCACAACAGAG-C-CTGAGAGGCCATAGGGTTGGATAAGGAATAGGAGCCGAGACTTAGA 948
||||||||||| | ||||||||||| ||||||||||| ||||||||||| ||||||| ||
Sbjct 2434 GCACAACAGAGCCTCTGAGAGGCCAGAGGGTTGGATATGGAATAGGAGCAGAGACTTGGA 2375
Query 949 AACATATTTCTCTCGTCCTTCAACAGTTTTTACTAATAAGTCTCAAGATACAGTTCGGCC 1008
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2374 AACATCTTTCTCTCGTCCTTCAACATTTTTTACTAATAAGTCTCAAGATACAGTTCGGCC 2315
Query 1009 ATAGCTTAACGATGCAAGGTAGAGATTCTTTCCCCATTTTTCCT 1052
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2314 ATAGCTTAACGATGCAAGGTAGAGATTCTTTCCCCATTTTTCCT 2271
Score = 315 bits (170), Expect = 9e-85
Identities = 186/194 (96%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 1148 CCTTGACGTGTGTGCTGGGGAATTGAGAGGTACGTAACGTCTCTTGTGTCTCATCAACAA 1207
||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||| |
Sbjct 2273 CCTTGACATGTGTGCTGGGGAATTGAGAGGTACGCAATGTCTCTTGCGTCTCATCAACCA 2214
Query 1208 GTCTACGACGTGGGATGCTTAGGATGAGAGCAGCTTGATCGGTTGTGGCTGCTGTTGATG 1267
||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||
Sbjct 2213 GTCTACGACGTGGGATGCTTAAGATGAGGGCAGCTTGATCGGTTGTTGCTGCTGTTGATG 2154
Query 1268 TGATTCTGAATCCACCATCCCAACGCCTGTGGATGCCTTCACTTGGATACAGAAAATCAA 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2153 TGATTCTGAATCCACCATCCCAACGCCTGTGGATGCCTTCACTTGGATACAGAAAATCAA 2094
Query 1328 GTTCCACAACCTGT 1341
||||||||||||||
Sbjct 2093 GTTCCACAACCTGT 2080
Score = 270 bits (146), Expect = 2e-71
Identities = 158/164 (96%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 1438 AACCTGTTCACTGTAGCCAGAATTGCGGGACATAACAACACCCCATCGATTTCCAGCTGT 1497
||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||
Sbjct 2086 AACCTGTTCACTGTAGCCAGAATTGCGAGACATAACGACACCCCACCGGCTTCCAGCTGT 2027
Query 1498 TGCCATTGAGGTTACATGGAAGCCTTCTCTCCATTTCTTGTTTATCCACTTGAACGGGAA 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2026 TGCCATTGAGGTTACATGGAAGCCTTCTCTCCATTTCTTGTTTATCCACTTGAACGGGAA 1967
Query 1558 TGAATCGCTTACTTTGTAAGACTGCTGTGTATACTGCGTACCTT 1601
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1966 TGAATCGCTTACTTTGTAAGACTGCTGTGTATACTGTGTACCTT 1923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62315640820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5