BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13672.2 Length=1662 Score E Sequences producing significant alignments: (Bits) Value Ahg904276 jgi|Araly1|904276|Al_scaffold_0003_1404 905 0.0 Ahg478759 jgi|Araly1|478759|fgenesh2_kg.3__1460__AT3G13670.1 490 1e-137 > Ahg904276 jgi|Araly1|904276|Al_scaffold_0003_1404 Length=678 Score = 905 bits (490), Expect = 0.0 Identities = 619/679 (91%), Gaps = 17/679 (3%) Strand=Plus/Plus Query 22 ATGGAACCTCGAATCAATGACCTTCAGGTGGAATCTCGGGTTCATGAGTTGCTCGATTTT 81 ||||||||||||||||||||||||||| | |||||||||||||||| |||||| |||||| Sbjct 1 ATGGAACCTCGAATCAATGACCTTCAGATTGAATCTCGGGTTCATGCGTTGCTTGATTTT 60 Query 82 CCGGTTCATACAAACCAGATATCCTCTGCAATCTACGAGATCCTATTGCAGTGT-C---C 137 ||||||| |||||||||||| |||||||||| ||| |||||||||| |||||| | | Sbjct 61 CCGGTTCGTACAAACCAGATGCCCTCTGCAATTTACCAGATCCTATTACAGTGTCCGAAC 120 Query 138 --C-A-A-C---GA-C-C-ACATCGAAAACCCTAAGAAGAAACCGTACAATTGTCCACAC 186 | | | | || | | |||| || ||| | ||||||||||| ||||| |||||| || Sbjct 121 GACGATACCGAAGAGCTCAACATTGAGAACTCAAAGAAGAAACCATACAAGTGTCCATAC 180 Query 187 TCAGGAGCCAAGTGTGATGTCACAGGAGATATTCAAAGGCTACTACTGCATCTAAGGAAT 246 ||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||| Sbjct 181 TCAGGAGCCAAGTGTAATGTCACAGGAGATATTCAAAGGCTGCTTCTGCATCTAAGGAAT 240 Query 247 GATCACAATGTTGAAATG-AGTGATGGGCGTAGTTTCAGTCACAGATATGTTCATCATGA 305 |||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| | Sbjct 241 GATCACAATGTTGAAATGCA-TGATGGGCGTAGTTTCAGTCATAGATATGTTCATCATAA 299 Query 306 TCCTAAACATCTTCATCATGCTACTTGGATGTTAACACTTCTCGATTGTTGTGGTCGAAA 365 ||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||| | Sbjct 300 TCCTAAACATCTTCATCATGCTACTTGTATGTTAACCCTTCTCGATTGTTTTGGTCGACA 359 Query 366 ATTCTGCTTGTACTTCGAAGCGTTTCACCTGAGGAAAACACCAATGTACATGGCCTTCAT 425 ||||||||| ||||||||||| ||||||||||||||||||||||||||||| || || || Sbjct 360 ATTCTGCTTATACTTCGAAGCATTTCACCTGAGGAAAACACCAATGTACATAGCATTTAT 419 Query 426 GCAGTTTATGGGAGATGAAGAAGAGGCAATGAGCTTCAGCTATAGTTTGCAGGTCGGAGG 485 |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| || Sbjct 420 GCAGTTTATGGGAGATGAAGAAGAAGCAATGAGCTTCAGCTATAGTTTGGAGGTCGGTGG 479 Query 486 GAATGGCAGAAAGCTGACATGGCAAGGCGTGCCGAGGAGCATTCGTGACAGTCACAAGAC 545 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 480 CAATGGCAGAAAGCTGACATGGCAAGGCGTGCCGAGGAGCATTTGTGACAGTCACAAGAC 539 Query 546 GGTTCGTGATAGTCAAGATGGCTTAATCATCACTCGCAAATTGGCTTTGTTCTTCTCTAC 605 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 540 GGTTCGTGATAGTCAAGATGGCTTAATCATCACTCGCAAATTGGCTTCGTTCTTCTGTAC 599 Query 606 CGACAACAACACCACCGACAAGGAGCTGAAGTTGAAGGTTTCAGGTCGTGTATGGAGAGA 665 |||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| Sbjct 600 CGACAACAACACCACCAACAAGGAACTGAAGTTGAAGGTTTCAGGCCGTGTATGGAGAGA 659 Query 666 ACAGCCTGTTTCGATATGA 684 ||||||| ||||| ||||| Sbjct 660 ACAGCCTATTTCGTTATGA 678 > Ahg478759 jgi|Araly1|478759|fgenesh2_kg.3__1460__AT3G13670.1 Length=2608 Score = 490 bits (265), Expect = 1e-137 Identities = 320/344 (93%), Gaps = 13/344 (4%) Strand=Plus/Minus Query 716 TATAGAATATTTGGTGACAAAAATATCTTTTCTTGATTT-AAAAATTAAATATAGCAATT 774 ||||||||||||||| ||||||||||||||||||||||| ||||||| || ||||||||| Sbjct 2608 TATAGAATATTTGGTAACAAAAATATCTTTTCTTGATTTAAAAAATT-AA-ATAGCAATT 2551 Query 775 TCGAGGGAAATGTGTAGGTAAACTGGTGATTA--TGGCTCAATCCCCTTCACAAGGGG-G 831 | ||||||||||||||| ||| |||||||||| ||||||||| ||||||||||||| | Sbjct 2550 TAGAGGGAAATGTGTAGCTAATCTGGTGATTATGTGGCTCAAT--CCTTCACAAGGGGAG 2493 Query 832 -GAATAAACAACACAATCACCACATTTTTGCTTCACAATTCAACTGaaaaaaaaGAAGAA 890 |||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||| Sbjct 2492 AGAATAAACAACACAATCACCACTTTTTTGCTTCACAATTCAACTG-AAAAAAA-AAGAA 2435 Query 891 GCACAACAGAG-C-CTGAGAGGCCATAGGGTTGGATAAGGAATAGGAGCCGAGACTTAGA 948 ||||||||||| | ||||||||||| ||||||||||| ||||||||||| ||||||| || Sbjct 2434 GCACAACAGAGCCTCTGAGAGGCCAGAGGGTTGGATATGGAATAGGAGCAGAGACTTGGA 2375 Query 949 AACATATTTCTCTCGTCCTTCAACAGTTTTTACTAATAAGTCTCAAGATACAGTTCGGCC 1008 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2374 AACATCTTTCTCTCGTCCTTCAACATTTTTTACTAATAAGTCTCAAGATACAGTTCGGCC 2315 Query 1009 ATAGCTTAACGATGCAAGGTAGAGATTCTTTCCCCATTTTTCCT 1052 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2314 ATAGCTTAACGATGCAAGGTAGAGATTCTTTCCCCATTTTTCCT 2271 Score = 315 bits (170), Expect = 9e-85 Identities = 186/194 (96%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 1148 CCTTGACGTGTGTGCTGGGGAATTGAGAGGTACGTAACGTCTCTTGTGTCTCATCAACAA 1207 ||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||| | Sbjct 2273 CCTTGACATGTGTGCTGGGGAATTGAGAGGTACGCAATGTCTCTTGCGTCTCATCAACCA 2214 Query 1208 GTCTACGACGTGGGATGCTTAGGATGAGAGCAGCTTGATCGGTTGTGGCTGCTGTTGATG 1267 ||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| Sbjct 2213 GTCTACGACGTGGGATGCTTAAGATGAGGGCAGCTTGATCGGTTGTTGCTGCTGTTGATG 2154 Query 1268 TGATTCTGAATCCACCATCCCAACGCCTGTGGATGCCTTCACTTGGATACAGAAAATCAA 1327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2153 TGATTCTGAATCCACCATCCCAACGCCTGTGGATGCCTTCACTTGGATACAGAAAATCAA 2094 Query 1328 GTTCCACAACCTGT 1341 |||||||||||||| Sbjct 2093 GTTCCACAACCTGT 2080 Score = 270 bits (146), Expect = 2e-71 Identities = 158/164 (96%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 1438 AACCTGTTCACTGTAGCCAGAATTGCGGGACATAACAACACCCCATCGATTTCCAGCTGT 1497 ||||||||||||||||||||||||||| |||||||| |||||||| || |||||||||| Sbjct 2086 AACCTGTTCACTGTAGCCAGAATTGCGAGACATAACGACACCCCACCGGCTTCCAGCTGT 2027 Query 1498 TGCCATTGAGGTTACATGGAAGCCTTCTCTCCATTTCTTGTTTATCCACTTGAACGGGAA 1557 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2026 TGCCATTGAGGTTACATGGAAGCCTTCTCTCCATTTCTTGTTTATCCACTTGAACGGGAA 1967 Query 1558 TGAATCGCTTACTTTGTAAGACTGCTGTGTATACTGCGTACCTT 1601 |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1966 TGAATCGCTTACTTTGTAAGACTGCTGTGTATACTGTGTACCTT 1923 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62315640820 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5