BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G13674.1

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478762 jgi|Araly1|478762|fgenesh2_kg.3__1463__AT3G13674.1         817    0.0  


> Ahg478762 jgi|Araly1|478762|fgenesh2_kg.3__1463__AT3G13674.1
Length=540

 Score =  817 bits (442),  Expect = 0.0
 Identities = 511/543 (94%), Gaps = 10/543 (2%)
 Strand=Plus/Plus

Query  13   TGCTTCTTCCTGGCAATGGCATCTTCAAGAGTGTTAGGCAGATTCTCGTCTCGATTAAAG  72
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    TGCTTCTTCCTAGCAATGGCATCTTCAAGAGTGTTAGGCAGATTCTCGTCTCGATTAAAG  60

Query  73   TCTCTATGTCAAAATCTCAGCAACAAGAATGCCAATGTTTCATCACTCCCCTCTCCCATC  132
             | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CCACTATGTCAAAATCTCAGCAACAAGAATGCCAATGTTTCATCACTCCCCTCTCCCATC  120

Query  133  AAATCTGCATCACCTTCCTCAGCAACTAGTTGTCGTCTCAATCGATCTTCAAGATTACCA  192
            |||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct  121  AAATCTGCTTCACCTTCCTCAGCAACTACTCGTCGTCTCAATCGATCTTCAAGATTACCA  180

Query  193  GTGGAGTTGAGCTCGATGATACCTCTGCACAGTGCTATAGCATCGTCCAGGCTCGTCTCA  252
            ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  181  GTGGAATTGAGCTCGATGATACCTCTACACAGTGCTATAGCATCGTCCAGGCTAGTCTCA  240

Query  253  AGTTTGTCCGTTGAATCCAAAATCTGGGGATTAGTTCCTCAAGGTCTTTCATTGCCTTTA  312
            ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  241  AGTTTGTCCATTGAATCCAAAATCTGGGCATTAGTTCCTCAAGGTCTTTCATTGCCTTTA  300

Query  313  TGACAGTTTTCTTTTCTCATCTTACAACAAGTTTCCAGGAGGATAGAGACAT-AAACGAA  371
            ||||||| || ||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct  301  TGACAGTATTGTTTTCTCATCTTACAACAAGTTTCCAGGAGGATAGAGACATTAAA-GAA  359

Query  372  -GCTCGGATTGTATCGTTCTTTTTAGCTTTTATTCACATCCGAAAG-TCCTGTAGTTTAG  429
             ||| |||||||||||||||| | ||||||||||||||||  |||| || ||||||||||
Sbjct  360  CGCTTGGATTGTATCGTTCTTATAAGCTTTTATTCACATC--AAAGGTCATGTAGTTTAG  417

Query  430  ATTCTGTTATCTTGCGGTTTTGAGTTAATCAGAAACAGAGTAATCAATGTAATGTTGCAG  489
            |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct  418  ATTCTGTTATCTTGCGCTTTTGAGTTAATCAGAAACTGAGTAATCAATGTAATGTTGCAG  477

Query  490  GCTAGATCTTTCATCTTTGGAAATTTAttttttt----CTCATGCAATTTCTTTAGCTTG  545
            || ||||||||||||||||||||||| |||||||    ||||||||||||||||||||| 
Sbjct  478  GCAAGATCTTTCATCTTTGGAAATTTCTTTTTTTTTTTCTCATGCAATTTCTTTAGCTTA  537

Query  546  ACC  548
            |||
Sbjct  538  ACC  540



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19993528636


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5