BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13680.1 Length=1433 Score E Sequences producing significant alignments: (Bits) Value Ahg929122 jgi|Araly1|929122|scaffold_301579.1 1744 0.0 Ahg929120 jgi|Araly1|929120|scaffold_301577.1 876 0.0 Ahg924799 jgi|Araly1|924799|scaffold_200360.1 429 3e-119 Ahg925254 jgi|Araly1|925254|scaffold_200815.1 246 3e-64 Ahg907234 jgi|Araly1|907234|Al_scaffold_0002_315 135 6e-31 Ahg929654 jgi|Araly1|929654|scaffold_302111.1 87.9 2e-16 Ahg925743 jgi|Araly1|925743|scaffold_201304.1 67.6 2e-10 Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 67.6 2e-10 Ahg331355 jgi|Araly1|331355|fgenesh1_pm.C_scaffold_8000698 58.4 1e-07 Ahg315612 jgi|Araly1|315612|fgenesh1_pm.C_scaffold_2000645 56.5 5e-07 > Ahg929122 jgi|Araly1|929122|scaffold_301579.1 Length=1248 Score = 1744 bits (944), Expect = 0.0 Identities = 1137/1228 (93%), Gaps = 21/1228 (2%) Strand=Plus/Plus Query 1 ATGACGACCATGGGCGATCTTCCAGGCGATTTGGTAGAGGAGATACTCTCTAGGGTTCCG 60 |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 21 ATGACGACAATGGGGGATCTTCCAGGCGATTTGGTAGAGGAGATACTCTCAAGGGTTCCG 80 Query 61 CTGACATCTCTGAGGGCTATACGATCTACTTGCCAAAAGTGGAACTCTTTATCGAAAAGT 120 |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| | Sbjct 81 CTGACATCTCTGAGGGCTATACGATCCACTTGCAAAAAGTGGAACTCTTTATCGAAAAAT 140 Query 121 CAGATTTGTGGTAGAAAAGCAACAGCAGC-AGAGAATAAGTTTCTGGGGTTTATGATGAA 179 ||||||| ||||| ||||||||||||||| || ||| ||||| |||||||||||||||| Sbjct 141 CAGATTTTTGGTAAAAAAGCAACAGCAGCAAG-GAAGCAGTTTATGGGGTTTATGATGAA 199 Query 180 GGATTCAAGGGTTTGTTCAA-TGAAATTTGATCTCCAAGGAATCAGAAACGACGACGGGG 238 |||||||||| ||||||||| || |||| ||||||||||||||| ||||||||||||| Sbjct 200 GGATTCAAGGCTTTGTTCAATTG-AATTCGATCTCCAAGGAATCCGAAACGACGACGGCA 258 Query 239 AGTTGGTTGAGCCATCTATAAAGCAAGTAAGTAAACTCGATCAAATCGAGGTCTCTCAAG 298 | || ||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 259 ACTTCGTTGATCCATCTATAAAGCAAGTAAATAAACTCGATCAATTCGAGGTCTCTCAAG 318 Query 299 TTTTTCACTGTGACGGTTTAGTCCTATGCATCATTAAGGACAACACAGGGCTCTTGGTAT 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 319 TTTTTCACTGTGACGGTTTAGTCCTATGCATCATTAAGGACAACACAGGGCTCTTGGTAT 378 Query 359 GGAACCCTTATTTGGGGCAAACTAGGTGGATCCATCCGAGAAACAATTACCAGATAGAAG 418 ||||||||||||||||||||||||||| |||||| ||||||||||||| |||||| |||| Sbjct 379 GGAACCCTTATTTGGGGCAAACTAGGTCGATCCAACCGAGAAACAATTTCCAGATGGAAG 438 Query 419 ATAGGTATGCTCTTGGATATGATAACAACCGTAACCACAAAATATTGAGGATTTTCGATT 478 | ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 439 ACAGGTATGCTCTTGGATATGATAACAACCGTAACTACAAAATTTTGAGGATTTTCGATT 498 Query 479 TGTATCCAAGCAGCAACCGCGTTTTTGGGTACGAAGTCTACGATTTTAGCTCTAATTCAT 538 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 499 TGTATCCAAGCAGAAACCGCGTTTTTGGGTACGAAGTCTACGATTTTAGCTCTAATTCAT 558 Query 539 GGAAGGTTCTTGATGTCATTCCTGAGTGGGATATACAGTCTCATTTTCGTGGCGCGTCTT 598 ||||| |||||||||||| ||| | ||||||||||||||||||| |||||||| ||||| Sbjct 559 GGAAGCTTCTTGATGTCAATCCCGGGTGGGATATACAGTCTCATCATCGTGGCGTGTCTT 618 Query 599 TGAAAGGGAATGCTTATTTTCCTGCGCAAAAGAAAGAAACAGTGGGAGGAATAAAGACAA 658 ||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 619 TGAAAGGGAATACTTATTTTCCTGCGCAAAAGAAAAAAACAGAGGGAGGAATAAAGACAA 678 Query 659 -TAAATATTGAAGATGTTCTACTTTGTTTCGATTTTACAAGGGAGAGATTTGGACCGCCT 717 ||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 679 CTAA-TATTGAAGATGTTCTACTTTGTTTTGATTTTACAAGCGAGAGATTTGGACCGCCT 737 Query 718 CTGCCACTGCCGTTTCACTCTTACAATGCAGACTTTTTTGTGTCTCTAGCTTGTGTTAGG 777 |||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||| Sbjct 738 CTGCCACTGCCGTTTCACTCTTACAATGCAGAAATTTTTGTCTCTCTATCTTGTGTTAGG 797 Query 778 GAAGAGCAGCTCGCTGTGTTATATCAACGCTGGGGGGCATTTGAGACAATCGAGATTTGT 837 ||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 798 GAAGAGCAGCTCGCTATGTTATATCAACGCTGGGAGGCATGTGAGACAATCGAGATTTGT 857 Query 838 GTTACAAATAAGATTGATCCCAATACGGTTTCGTGGAGCAAGTTTTTGATAACGTCCACT 897 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 858 GTTACAAATAAGATTGATCCCAATACGGTTTCATGGAGCAAGTTTTTGATAACGTTCACT 917 Query 898 GGTTTTCCGGTTGACACTTTTTCTGGGAGCTTTTTCATTGATGAGGAGAAGAAAGTTGCT 957 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 918 GGCTTTCCGGTTGACACTTTTTCTGGGAGCTTTTTCATTGATGAGGAGAAGAAAGTTGCT 977 Query 958 GTGGTTTTTGATTTAGATAGATATAAACCGACTGAGACCTGTCGCTACCAAATAGTTTAT 1017 |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| | || Sbjct 978 GTGGTTTTTGATCTAGATAGATATAAACCGACCGAGACCTGTCGCTACCAAATAGCTCAT 1037 Query 1018 ATTATTGGACAAGATGAATACTTCAAATCTGTCAACATGGGAGTTGCCCCAAATATCGCG 1077 |||||||||||||||||||||||||||||||| || || |||||||| |||||| ||| | Sbjct 1038 ATTATTGGACAAGATGAATACTTCAAATCTGTGAATATCGGAGTTGCGCCAAATCTCGGG 1097 Query 1078 A-A--GAAC----TCG--T--AC-CA-A-G-CTTACTGTGTTCCACTTGTGTGCTCTTCT 1122 | | | || | | | || | | | | |||||||||||||||||||||||||| Sbjct 1098 ATATCGTACAAAGTTGGATTTACTCCGACGGCATACTGTGTTCCACTTGTGTGCTCTTCA 1157 Query 1123 TCCTATGTTCCAAGCTTAGTTCAACTACAAATCAACAAACCGGGCAAAAGGAAAGAAAGT 1182 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1158 TCCTATGTTCCAAGCTTAGTTCAACTACAAATCAACAAACCAGGCAAAAGGAAAGAAAGT 1217 Query 1183 AACTAGTTCCATTTACACTActttttat 1210 | |||||||||||||| |||||||||| Sbjct 1218 AGTTAGTTCCATTTACAGTACTTTTTAT 1245 > Ahg929120 jgi|Araly1|929120|scaffold_301577.1 Length=1237 Score = 876 bits (474), Expect = 0.0 Identities = 890/1083 (82%), Gaps = 60/1083 (6%) Strand=Plus/Plus Query 1 ATGACGACCATGGGCGATCTTCCAGGCGATTTGGTAGAGGAGATACTCTCTAGGGTTCCG 60 |||||||| || | ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 21 ATGACGACAATAGCCGATCTTCCAGGCGATTTGGTAGAGGAGATACTCTCTAGAGTTCCA 80 Query 61 CTGACATCTCTGAGGGCTATACGATCTACTTGCCAAAAGTGGAACTCTTTATCGAAAAGT 120 ||||||||| |||| || | ||||||||||||| ||||||||||| |||||||||||| | Sbjct 81 CTGACATCTTTGAGAGCAACACGATCTACTTGCAAAAAGTGGAACGCTTTATCGAAAAAT 140 Query 121 CAGATTTGTGGTAGAAAAGCAACAGCAGCAGAG-AATAAGTTTCTGGGGTTTATGATGAA 179 ||||||| |||||||||||||||||||||| || || ||||| |||||||||||||||| Sbjct 141 CAGATTTTTGGTAGAAAAGCAACAGCAGCA-AGGAAGCAGTTTATGGGGTTTATGATGAA 199 Query 180 GGATTCAAGGGTTTGTTCAAT-GAAATTTGATCTCCAAGGAATCAGAAACGACGACGGGG 238 |||||||||| |||||||||| ||| || ||||||||||||||| |||| || ||||| Sbjct 200 GGATTCAAGGCTTTGTTCAATTGAA-TTCGATCTCCAAGGAATCCGAAATGAAGACGGCA 258 Query 239 AGTTGGTTGAGCCATCTATAAAGCAAGTAAGTAAACTCGATCAAATCGAGGTCTCTCAA- 297 | || ||||| |||||||||||||||||||||| ||| | ||| ||||||| ||| || Sbjct 259 ACTTCGTTGATCCATCTATAAAGCAAGTAAGTATACTTAACCAAGTCGAGGTATCT-AAT 317 Query 298 GTTTTTCACTGTGACGGTTTAGTCCTATGCATCATTAAGGACAACAC-AGGGCTCTTGGT 356 || |||||||| ||||||||| | |||||| || || ||||||| | ||| |||||||| Sbjct 318 GTCTTTCACTGCGACGGTTTATTGCTATGCGTCCTTGAGGACAATTCGAGG-CTCTTGGT 376 Query 357 ATGGAACCCTTATTTGGGGCAAACTAGGTGGATCCATCCGAGAAACAATTACCAGATAGA 416 |||||| || |||||||||||||| ||||||||||| || ||||||| || | | | || Sbjct 377 ATGGAATCCGTATTTGGGGCAAACCAGGTGGATCCAACCCAGAAACACTTTC-A--T-GA 432 Query 417 AGATAGGTATGCTCTTGGATATGATAACAACCGTAACCACAAAATATTGAGGATTTTCGA 476 | | ||| | || ||||| || ||||||||||||||||| |||||||||||| | Sbjct 433 -G---GC-ATGA-CA-GG-TATGACAAGAACCGTAACCACAAAATCTTGAGGATTTTCTA 484 Query 477 TTTGTATCCAAGCAGCAACCGCGTTTTTGGGTACGAAGTCTACGATTTTAGCTCTAATTC 536 | || ||| | | | | |||||| ||| | |||| |||||||||||||||||||||| Sbjct 485 TGTG-ATC---G-A-C--C-GCGTTTCTGGTTTCGAAATCTACGATTTTAGCTCTAATTC 535 Query 537 ATGGAAGGTTCTTGATGTCATTCCTGAGTGGGATATACA-GTCTCATTTTCGTGGCGCGT 595 ||||||||||||| |||||| |||||| ||||| ||| | | ||| | ||||| | || Sbjct 536 ATGGAAGGTTCTTCATGTCACTCCTGACTGGGAAATA-ATGCCTCCTCGGCGTGGTGTGT 594 Query 596 CTTTGAAAGGGAA-TGCTTATTTTCCTGCGCAAAAGA-AAGAAACAGTGGG---AGGAAT 650 ||||||| ||||| | |||| |||||||| ||||||| || || |||||| ||||| Sbjct 595 CTTTGAA-GGGAAATACTTACTTTCCTGCTCAAAAGAGAACAAT-AGTGGGTGTAGGAAC 652 Query 651 AA-A-G-ACAATAAATATTGAAGATGTTCTACTTTG-TTTCGATTTTACAAGGGAGAGAT 706 || | | | |||||| | ||||||| || || | || ||| ||||||||||| ||||||| Sbjct 653 AAGAAGGATAATAAAGAGTGAAGATTTTTTAGTCTGCTTT-GATTTTACAAGAGAGAGAT 711 Query 707 TTGGACCGCCTCTGCCACTGCCGTTTCACTCTTACAATGC-AGACTTTTTTGTGTCTCTA 765 ||||||||| ||| || |||||||||||||||||||||| ||||||||| ||||||||| Sbjct 712 TTGGACCGCTTCTCCCTCTGCCGTTTCACTCTTACAATGTTAGACTTTTT-GTGTCTCTA 770 Query 766 GCTTGTGTTAGGGAAGAGCAGCTCGCTGTGTTATATCAACGCTGGGGGGCATTTGA-G-- 822 |||||||||| || |||||||||||||||||||||||||||| || ||| ||| | Sbjct 771 TCTTGTGTTAGAGACGAGCAGCTCGCTGTGTTATATCAACGCTTGGACACATATGATGGG 830 Query 823 ACAATCGAGATTTGTGTTACAAATAAGATTGATCCCAATACGGTTTCGTGGAGCAAGTTT 882 ||| ||||| ||||||||||| ||||||||||||||||| | || || ||||||| |||| Sbjct 831 ACAGTCGAGTTTTGTGTTACAGATAAGATTGATCCCAATGCTGTGTCTTGGAGCATGTTT 890 Query 883 TTGATAAC--GTCCACTGGTTTTCCGGTTGACACTTTTT-CTGGGAGCTTTTTCATTGAT 939 |||| ||| ||| | ||||||| ||||| | || || | ||||||| |||||||| || Sbjct 891 TTGA-AACAAGTC-ATTGGTTTTACGGTTAA-ACCTTGTGCTGGGAGTTTTTTCATCGAC 947 Query 940 GAGGAGAAGAAAGTTGCTGTGGTTTTTGATTTAGATAG-ATATAAACCGACTGA-G-ACC 996 | ||||||||||| || |||||||| ||| ||||| | ||||||| | | | | | Sbjct 948 CAAGAGAAGAAAGTCGCCGTGGTTTTCGATATAGAT-GTATATAAAAAGG-TCAAGGAA- 1004 Query 997 TGTCGCTACCAAATAGTTTATATTATTGGACAAGATGAATACTTCAAATCTGTCAACATG 1056 |||||||| |||| || ||| || ||||||||||||| ||||||||||||||| || || Sbjct 1005 TGTCGCTATCAAACAGCTTACATCATTGGACAAGATGGATACTTCAAATCTGTGAATATC 1064 Query 1057 GGA 1059 ||| Sbjct 1065 GGA 1067 > Ahg924799 jgi|Araly1|924799|scaffold_200360.1 Length=466 Score = 429 bits (232), Expect = 3e-119 Identities = 343/395 (87%), Gaps = 13/395 (3%) Strand=Plus/Plus Query 442 AACAACCGTAACCACAAAATATTGAGGATTTTCGATTTGTATCCAAGCAGCAACCGCGTT 501 ||||||||||| |||||||| |||||||||||| || ||||||||||||| |||| || | Sbjct 78 AACAACCGTAATCACAAAATCTTGAGGATTTTCAATCTGTATCCAAGCAGAAACCACGAT 137 Query 502 TTTGGGTACGAAGTCTACGATTTTAGCTCTAATTCATGGAAGGTTCTTGATGTCATTCCT 561 ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 138 TTTAGGTACCAAGTCTATGATTTTAGCTCTAATTCATGGAAGGTTCTTGATGTCAAACCA 197 Query 562 GAGTGGGATATACAGTCTCATTTTCGTGGCGCGTCTTTGAAAGGGAATGCTTATTTTCCT 621 |||||| ||||||| |||||| ||||||| ||||||||| |||||| ||||||||||| Sbjct 198 GAGTGGAATATACACTCTCATCAACGTGGCGTGTCTTTGAAGGGGAATACTTATTTTCCT 257 Query 622 GCGCAAAAGAAA-GAAACAGTGGGAGGAATAAAGACAATAAATATTGAAGATGTTCTACT 680 | ||| |||||| ||| | ||||||||| | |||||||||||||||||||| | Sbjct 258 GTGCATAAGAAAAGAACC-GTGGGAGGA-----G----TAAATATTGAAGATGTTCTAGT 307 Query 681 TTGTTTCGATTTTACAAGGGAGAGATTTGGACCGCCTCTGCCACTGCCGTTTCACTCTTA 740 |||||| |||||||||| ||||||||||||||||||||||||||||| ||| ||||||| Sbjct 308 TTGTTTTGATTTTACAAAAGAGAGATTTGGACCGCCTCTGCCACTGCCATTTAACTCTTA 367 Query 741 CAATGCAGACTTTTTTGTGTCTCTAGCTTGTGTTAGGGAAGAGCAGCTCGCTGTGTTATA 800 ||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 368 CAATGCAGAAAATTTTGTGTCTCTATCTTGTGTTAGGGAAGAGCAGCTCGCTATGTTATA 427 Query 801 TCAACGCTGGGGGGCATTTGAGACAATCGAGATTT 835 |||||||||||| ||||||||| | ||||||| Sbjct 428 TCAACGCTGGGGA--ATTTGAGACTTTTGAGATTT 460 > Ahg925254 jgi|Araly1|925254|scaffold_200815.1 Length=1202 Score = 246 bits (133), Expect = 3e-64 Identities = 577/776 (74%), Gaps = 92/776 (12%) Strand=Plus/Plus Query 322 CTATGCATCATTAAGGACAACACAG-GGCTCTTGGTATGGAACCCTTATTTGGGGCAAAC 380 |||||| || || |||||||| | | |||| ||||||||||| || ||| |||| Sbjct 281 CTATGCGTCCTTGAGGACAACTC-GAGGCTTTTGGTATGGAATCC-------GGG-AAAC 331 Query 381 TAGGTGGATCCATCCGAGA-A-ACAATTACCAGATAG-AAGATAG-GTATGCTCTTGGAT 436 | ||||||||| |||||| | | ||| | | | | |||| | ||||||||| |||| Sbjct 332 AAAGTGGATCCAACCGAGAGATA-AATCA-C-GCGGGCAAGA-CGCGTATGCTCTCGGAT 387 Query 437 ATG---ATAACAACCGTAACCACAAAATATTGAGGATTTTCGATTTGT-ATCCAAGCAGC 492 ||| | || || |||| ||||||||| ||||||| ||||||||| | || |||| | Sbjct 388 ATGACAAGAAGAAGCGTACCCACAAAATCTTGAGGAATTTCGATTT-TCCTCTAAGC-GG 445 Query 493 AACCGCGT-T-TT-T-GGGTACGAAGTCTACGATTTTAGCTCTAATTCATGGAAGGTTCT 548 || | || | || | | |||||| |||||||||||||||||||||||||||||||||| Sbjct 446 AAGAGAGTATGTTATAGTATACGAAATCTACGATTTTAGCTCTAATTCATGGAAGGTTCT 505 Query 549 TGATGTCATTCCTGA-G--TGGGATATA-CAGTCTCATTTTCGT-GGCGCGTCTTTGAAA 603 ||||||| | | || | || ||||| | |||||| | | |||||||||||||| Sbjct 506 TGATGTCCCTACGGACGACTGCCATATATCT-TCTCATAT-CAACGGCGCGTCTTTGAA- 562 Query 604 GGGAATG-CTTATTTTCCTGCGCAAAAGAAAGAAACAGTGGGAGGAATAAAGACAATAAA 662 ||||| ||||||||| ||| || | |||||| || || ||| ||| || Sbjct 563 GGGAAACACTTATTTTCTTGC--AA--G---GAAACAC-GG-AG---TAAC--CAA-AA- 606 Query 663 TA-TTGAAGATGTTCTACTTTGTTTCGATTTTACAAGGGAGAGATTTGGACCGCCTCTGC 721 || |||||||| || | || ||||| |||||||||| ||||| ||| | |||||||| Sbjct 607 TACTTGAAGATCTTTTGCTATGTTTTGATTTTACAACAGAGAGCTTTCG---GCCTCTGC 663 Query 722 CACTGCCGTTTC---ACTCTTACA---ATGCAG-ACTTTTTTGTGTCTCTAGCTTGTGTT 774 | |||||||||| || ||| || ||| || | |||| ||||||||| |||||||| Sbjct 664 CTCTGCCGTTTCGCGACACTTTCAGTGATGGAGGAGATTTT-GTGTCTCTATCTTGTGTT 722 Query 775 AGGGAAGAGCAGCTCGCTGTGTTATATCAACGCTGGGGGG-C--ATTTGA-GACAATCGA 830 | ||||| |||||||| || ||||||||||||| || | | | | | ||||||| Sbjct 723 AAAGAAGAACAGCTCGCGGTCTTATATCAACGCTATTGGAACCCACCT-ACGGCAATCGA 781 Query 831 GAT-TTGTGTTACAAATAAGATTGATCC-C-AA-TACGGTTTCGTGGAGCAAGTTTTTGA 886 ||| || |||||| |||||||||||| | || | |||| ||||||| ||||||||| | Sbjct 782 GATCTT-TGTTACGAATAAGATTGATGATCTAAATGCGGTGTCGTGGATCAAGTTTTTAA 840 Query 887 TAAC-GTCCACTGGTTTTC-CGGT-TGACACTTTTTCTGGGAGCTTTTTCATTGATGAGG 943 ||| |||||| ||||| |||| || ||| |||||||| ||||||||||| | | Sbjct 841 -AACTGTCCACCAGTTTTTACGGTCTGTG--TTTGTCTGGGAGTTTTTTCATTGACCAAG 897 Query 944 AGAAGAAAGTTGCTGTGGTTTTTGATTTAGA-T-AGATAT-AA--ACCGACTGA-GAC-- 995 |||||||||||||||||||||| ||| |||| | | || || || || | | | Sbjct 898 AGAAGAAAGTTGCTGTGGTTTTCGATCTAGAGTTACCTACCAATGACA-ACAGTCGTCGT 956 Query 996 C-T-GTCGCTACCAAATAGTTTATATTATTGGACAAGATGAATACTTCAAATCTGT 1049 | | |||||||||||| || | | || |||||| |||||| |||||| |||||||| Sbjct 957 CGTCGTCGCTACCAAACAGCTCACATCATTGGAGAAGATGGATACTTGAAATCTGT 1012 > Ahg907234 jgi|Araly1|907234|Al_scaffold_0002_315 Length=1137 Score = 135 bits (73), Expect = 6e-31 Identities = 775/1097 (71%), Gaps = 115/1097 (10%) Strand=Plus/Plus Query 1 ATGACGACCATGGGCGATC-TTC-CAGGCGATTTGGTAGAGGAGATACTCTCTAGGGTTC 58 ||||||| ||| ||||| ||| ||| | ||||||||||||||||||||||||||||| Sbjct 1 ATGACGATGATGTCCGATCTTTCGAAGG-G-TTTGGTAGAGGAGATACTCTCTAGGGTTC 58 Query 59 CGCTGACATCTCTGAGGGCTAT-ACGATCTACTTGCCAA-AAGTGGAACTCTTTATCGAA 116 | | || |||||||| ||| | | ||||||||||| || || ||||||| |||| | || Sbjct 59 CAATAACTTCTCTGAGAGCTGTGA-GATCTACTTGCAAACAA-TGGAACTGTTTAACCAA 116 Query 117 A-AGTC--AGATTTGTGGTAGAAAAGCAACA-GCAGCAGAG-AAT-AAG--TTTCTGGG- 167 | | || || ||| |||| |||| | | | || || ||| ||| | || Sbjct 117 AGA-TCCTAGCTTTACAA-AGAA--GCAATGTG-ATAA-AGCAACCAAGGGTTTGTTGGT 170 Query 168 GTTTATGATGAAGGATTC-AAGGGTTTGTTCAATGAAAT-TTGATCTCCAAGGAATC-AG 224 | | ||| | || ||||| |||| | |||| |||| | || ||||||| |||||| | Sbjct 171 GATCATGCTTAATGATTCTAAGG-TCTGTTTGATGAG-TGTTAATCTCCATGGAATCCA- 227 Query 225 AAACGACGACGGGGAGTTGGTTGAGCCATCTATAAAGCAAGTA-A-GTAAACTCGATCAA 282 |||| || | | | | |||||| ||||||||||||| ||| | || |||| ||||| Sbjct 228 AAACCACAAAGACG--T-GGTTGATCCATCTATAAAGC--GTATATGTGAACTTAATCAA 282 Query 283 ATCGAGGTCTCTCAA-GTTTT-TCACTGTGACGGTTTAGTCCTATGC-ATCATTAAGGAC 339 || |||| ||| || || | | | ||||| || ||| | ||||| | || |||||| Sbjct 283 GTCAAGGTATCT-AACGTCATCT-ATTGTGATGGCTTATTGTTATGCCA-CACCAAGGAC 339 Query 340 -AA--CAC-AG--GGCTCTTGGTATGGAACCCTTATTTGGGGCAAACTAGGTGGATCCAT 393 || ||| | ||||| |||| ||| |||| ||| |||| ||||| || |||||| | Sbjct 340 GAAGACACTACTAGGCTCGTGGTTTGGGACCCGTATATGGGTCAAACCAGTTGGATCAAA 399 Query 394 CCGAGAAACAATTACCAGATAGAAGATAGGTAT-GCTCTTGGATATGATAACAACCGTAA 452 || |||| | |||||| | | ||||| || | | | | ||||| || || ||| || Sbjct 400 CCTAGAATCCCTTACCACAGATCAGATATGT-TCGGTATCGGATACGACAAGAACAACAA 458 Query 453 CCACAAAATATTGAGGATTTTCGATTTGTA-TCCAAGCAGCAACCGCGTTTTTGGGTACG 511 | ||||||| |||||| ||||| |||| | | || ||| | | ||||| | Sbjct 459 CTACAAAATTTTGAGGGTTTTC--TTTG-AGTTTGT-CAACAAT-G--TA---GGGTATG 508 Query 512 AAGTCTACGATTTTA-GCTCTAATTCATGGAAGGTTCTTGATGTCATTCCTGAGTGGGAT 570 || |||||||||||| | ||||| ||||||| ||||||| | ||| | | || || Sbjct 509 AAATCTACGATTTTAAG-TCTAACTCATGGAGGGTTCTT-AC--CAT-C-TC-GTCTAAT 561 Query 571 ATACAGTCTCATTTTCGTGGCGCGTCTTTGAAAGGGAATGCTTA-TTTTCCTGCGCAAAA 629 ||| || | | || |||| ||| |||||||| || |||| |||| ||| ||| Sbjct 562 ATAGTGTTTTACAAACGAGGCGTGTCATTGAAAGGAAACACTTACTTTTT-TGCTCAA-- 618 Query 630 GAAAGAAACAGTGGGAGGAATAAAGACAATAAATATTGAA-GATGTTCTACTTTGTTTCG 688 ||||||| || || | |||| | || ||| ||| | |||| |||| ||||||| Sbjct 619 GAAAGAATCAA----AGT--TGAAGA-AGTAGATAAAGAATG-TGTTTTACTCTGTTTCG 670 Query 689 ATTTTACAAGGGAGAGATTTGGACCGCCTCTGCCA-CTGCCGTTTCACTCTTACAAT-GC 746 |||||||||| ||||||||||||||| |||||| | || |||||||||| | | | | Sbjct 671 ATTTTACAAGAGAGAGATTTGGACCGGCTCTGC-ATCTTCCGTTTCACTGTGATGTTAGA 729 Query 747 -A-GACTTTTTTGTGTCTCTAG-CTTGTGTTAGGGAAGAGCAGCTCGCTGTGTTATATCA 803 | || | | || || ||| | ||| ||||| |||||||| || || ||||||| ||| Sbjct 730 TATGA-TGATATG-GT-TCT-GTCTTCAGTTAGAGAAGAGCATCTTGCAGTGTTATTTCA 785 Query 804 ACGCTGGGGGGCATTTGAGACAATCGAGATTTGTG-TTACAAATAAGATTGATCCCAATA 862 || | | || | ||| | ||||| || | |||||| ||||||||| |||||| Sbjct 786 GCGTTTAGATACAGATAAGA---TGGAGATATG-GATTACAACTAAGATTGAGCCCAATG 841 Query 863 CGGTTTCGTGGAGCAAGTT-TT-----TGA-TA--ACGTC---CACTGGTTTTCCGGTTG 910 |||| || |||| |||||| || ||| || | | | |||||||||| | ||| Sbjct 842 CGGTGTCATGGAACAAGTTCTTAGCCGTGAATACGAAGACAATCACTGGTTTTGAGTTTG 901 Query 911 ACACTTTTTC-TGGGAGCTT-TTTCATTGATGAGGAGAAGAAAGTTGCTGTGGTTTTTGA 968 | || | | |||| || ||| ||||||||||||||||||| || ||| ||| ||| Sbjct 902 AGG-TTGAACCTAGGAGTTTCTTTG-TTGATGAGGAGAAGAAAGTGGCAGTGATTTGTGA 959 Query 969 TTTAGATAGATAT-AAACCGACTGAGACCTGTCGCTACCAAATAGTTTATATTATTGGAC 1027 | || | |||| | |||||||| ||||| | | |||| ||| || || || ||||| Sbjct 960 TATACACAGAT-TCAAACCGACCAAGACCGGCCTCTACAAAACAGCTTGCATCATTGGGG 1018 Query 1028 AAGATGAATACTTCAAA 1044 | |||| |||||| ||| Sbjct 1019 AGGATGGATACTTGAAA 1035 > Ahg929654 jgi|Araly1|929654|scaffold_302111.1 Length=742 Score = 87.9 bits (47), Expect = 2e-16 Identities = 73/84 (87%), Gaps = 7/84 (8%) Strand=Plus/Plus Query 17 ATCTTCCA-GGCGATTTGGTAGAGGAGATACTCTCTAGGGTTCCGCTGACATCTCTGAG- 74 |||||||| || ||| ||||||||||||||||||||||||||||| |||||||| |||| Sbjct 31 ATCTTCCATGG-GATGTGGTAGAGGAGATACTCTCTAGGGTTCCGGTGACATCTTTGAGA 89 Query 75 -GGCTATACGATCTACTTGCCAAA 97 || || | ||||||||||| ||| Sbjct 90 CGGTTA-A-GATCTACTTGC-AAA 110 > Ahg925743 jgi|Araly1|925743|scaffold_201304.1 Length=1229 Score = 67.6 bits (36), Expect = 2e-10 Identities = 43/46 (93%), Gaps = 2/46 (4%) Strand=Plus/Plus Query 924 GAGCTTT-TTCATTGATGAGGAGAAGAAAGTTGCTGTGGTTTTTGA 968 ||| ||| |||||||| ||||||||||||||||||||||||||||| Sbjct 975 GAG-TTTCTTCATTGACGAGGAGAAGAAAGTTGCTGTGGTTTTTGA 1019 > Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 Length=1608 Score = 67.6 bits (36), Expect = 2e-10 Identities = 43/46 (93%), Gaps = 2/46 (4%) Strand=Plus/Plus Query 924 GAGCTTT-TTCATTGATGAGGAGAAGAAAGTTGCTGTGGTTTTTGA 968 ||| ||| |||||||| ||||||||||||||||||||||||||||| Sbjct 1371 GAG-TTTCTTCATTGACGAGGAGAAGAAAGTTGCTGTGGTTTTTGA 1415 > Ahg331355 jgi|Araly1|331355|fgenesh1_pm.C_scaffold_8000698 Length=1167 Score = 58.4 bits (31), Expect = 1e-07 Identities = 38/41 (93%), Gaps = 1/41 (2%) Strand=Plus/Plus Query 924 GAGCTTTTTCATTGATGAGGAGAAGAAAGTTGCTGTG-GTT 963 ||| ||||||||||||||||||||||||||||| ||| ||| Sbjct 978 GAGTTTTTTCATTGATGAGGAGAAGAAAGTTGCCGTGTGTT 1018 > Ahg315612 jgi|Araly1|315612|fgenesh1_pm.C_scaffold_2000645 Length=966 Score = 56.5 bits (30), Expect = 5e-07 Identities = 30/30 (100%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 30 TTTGGTAGAGGAGATACTCTCTAGGGTTCC 59 |||||||||||||||||||||||||||||| Sbjct 21 TTTGGTAGAGGAGATACTCTCTAGGGTTCC 50 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53592974715 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5