BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13680.1
Length=1433
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929122 jgi|Araly1|929122|scaffold_301579.1 1744 0.0
Ahg929120 jgi|Araly1|929120|scaffold_301577.1 876 0.0
Ahg924799 jgi|Araly1|924799|scaffold_200360.1 429 3e-119
Ahg925254 jgi|Araly1|925254|scaffold_200815.1 246 3e-64
Ahg907234 jgi|Araly1|907234|Al_scaffold_0002_315 135 6e-31
Ahg929654 jgi|Araly1|929654|scaffold_302111.1 87.9 2e-16
Ahg925743 jgi|Araly1|925743|scaffold_201304.1 67.6 2e-10
Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 67.6 2e-10
Ahg331355 jgi|Araly1|331355|fgenesh1_pm.C_scaffold_8000698 58.4 1e-07
Ahg315612 jgi|Araly1|315612|fgenesh1_pm.C_scaffold_2000645 56.5 5e-07
> Ahg929122 jgi|Araly1|929122|scaffold_301579.1
Length=1248
Score = 1744 bits (944), Expect = 0.0
Identities = 1137/1228 (93%), Gaps = 21/1228 (2%)
Strand=Plus/Plus
Query 1 ATGACGACCATGGGCGATCTTCCAGGCGATTTGGTAGAGGAGATACTCTCTAGGGTTCCG 60
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 21 ATGACGACAATGGGGGATCTTCCAGGCGATTTGGTAGAGGAGATACTCTCAAGGGTTCCG 80
Query 61 CTGACATCTCTGAGGGCTATACGATCTACTTGCCAAAAGTGGAACTCTTTATCGAAAAGT 120
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
Sbjct 81 CTGACATCTCTGAGGGCTATACGATCCACTTGCAAAAAGTGGAACTCTTTATCGAAAAAT 140
Query 121 CAGATTTGTGGTAGAAAAGCAACAGCAGC-AGAGAATAAGTTTCTGGGGTTTATGATGAA 179
||||||| ||||| ||||||||||||||| || ||| ||||| ||||||||||||||||
Sbjct 141 CAGATTTTTGGTAAAAAAGCAACAGCAGCAAG-GAAGCAGTTTATGGGGTTTATGATGAA 199
Query 180 GGATTCAAGGGTTTGTTCAA-TGAAATTTGATCTCCAAGGAATCAGAAACGACGACGGGG 238
|||||||||| ||||||||| || |||| ||||||||||||||| |||||||||||||
Sbjct 200 GGATTCAAGGCTTTGTTCAATTG-AATTCGATCTCCAAGGAATCCGAAACGACGACGGCA 258
Query 239 AGTTGGTTGAGCCATCTATAAAGCAAGTAAGTAAACTCGATCAAATCGAGGTCTCTCAAG 298
| || ||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 259 ACTTCGTTGATCCATCTATAAAGCAAGTAAATAAACTCGATCAATTCGAGGTCTCTCAAG 318
Query 299 TTTTTCACTGTGACGGTTTAGTCCTATGCATCATTAAGGACAACACAGGGCTCTTGGTAT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 TTTTTCACTGTGACGGTTTAGTCCTATGCATCATTAAGGACAACACAGGGCTCTTGGTAT 378
Query 359 GGAACCCTTATTTGGGGCAAACTAGGTGGATCCATCCGAGAAACAATTACCAGATAGAAG 418
||||||||||||||||||||||||||| |||||| ||||||||||||| |||||| ||||
Sbjct 379 GGAACCCTTATTTGGGGCAAACTAGGTCGATCCAACCGAGAAACAATTTCCAGATGGAAG 438
Query 419 ATAGGTATGCTCTTGGATATGATAACAACCGTAACCACAAAATATTGAGGATTTTCGATT 478
| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 439 ACAGGTATGCTCTTGGATATGATAACAACCGTAACTACAAAATTTTGAGGATTTTCGATT 498
Query 479 TGTATCCAAGCAGCAACCGCGTTTTTGGGTACGAAGTCTACGATTTTAGCTCTAATTCAT 538
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 TGTATCCAAGCAGAAACCGCGTTTTTGGGTACGAAGTCTACGATTTTAGCTCTAATTCAT 558
Query 539 GGAAGGTTCTTGATGTCATTCCTGAGTGGGATATACAGTCTCATTTTCGTGGCGCGTCTT 598
||||| |||||||||||| ||| | ||||||||||||||||||| |||||||| |||||
Sbjct 559 GGAAGCTTCTTGATGTCAATCCCGGGTGGGATATACAGTCTCATCATCGTGGCGTGTCTT 618
Query 599 TGAAAGGGAATGCTTATTTTCCTGCGCAAAAGAAAGAAACAGTGGGAGGAATAAAGACAA 658
||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 619 TGAAAGGGAATACTTATTTTCCTGCGCAAAAGAAAAAAACAGAGGGAGGAATAAAGACAA 678
Query 659 -TAAATATTGAAGATGTTCTACTTTGTTTCGATTTTACAAGGGAGAGATTTGGACCGCCT 717
||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 679 CTAA-TATTGAAGATGTTCTACTTTGTTTTGATTTTACAAGCGAGAGATTTGGACCGCCT 737
Query 718 CTGCCACTGCCGTTTCACTCTTACAATGCAGACTTTTTTGTGTCTCTAGCTTGTGTTAGG 777
|||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||
Sbjct 738 CTGCCACTGCCGTTTCACTCTTACAATGCAGAAATTTTTGTCTCTCTATCTTGTGTTAGG 797
Query 778 GAAGAGCAGCTCGCTGTGTTATATCAACGCTGGGGGGCATTTGAGACAATCGAGATTTGT 837
||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 798 GAAGAGCAGCTCGCTATGTTATATCAACGCTGGGAGGCATGTGAGACAATCGAGATTTGT 857
Query 838 GTTACAAATAAGATTGATCCCAATACGGTTTCGTGGAGCAAGTTTTTGATAACGTCCACT 897
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 858 GTTACAAATAAGATTGATCCCAATACGGTTTCATGGAGCAAGTTTTTGATAACGTTCACT 917
Query 898 GGTTTTCCGGTTGACACTTTTTCTGGGAGCTTTTTCATTGATGAGGAGAAGAAAGTTGCT 957
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 GGCTTTCCGGTTGACACTTTTTCTGGGAGCTTTTTCATTGATGAGGAGAAGAAAGTTGCT 977
Query 958 GTGGTTTTTGATTTAGATAGATATAAACCGACTGAGACCTGTCGCTACCAAATAGTTTAT 1017
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||| | ||
Sbjct 978 GTGGTTTTTGATCTAGATAGATATAAACCGACCGAGACCTGTCGCTACCAAATAGCTCAT 1037
Query 1018 ATTATTGGACAAGATGAATACTTCAAATCTGTCAACATGGGAGTTGCCCCAAATATCGCG 1077
|||||||||||||||||||||||||||||||| || || |||||||| |||||| ||| |
Sbjct 1038 ATTATTGGACAAGATGAATACTTCAAATCTGTGAATATCGGAGTTGCGCCAAATCTCGGG 1097
Query 1078 A-A--GAAC----TCG--T--AC-CA-A-G-CTTACTGTGTTCCACTTGTGTGCTCTTCT 1122
| | | || | | | || | | | | ||||||||||||||||||||||||||
Sbjct 1098 ATATCGTACAAAGTTGGATTTACTCCGACGGCATACTGTGTTCCACTTGTGTGCTCTTCA 1157
Query 1123 TCCTATGTTCCAAGCTTAGTTCAACTACAAATCAACAAACCGGGCAAAAGGAAAGAAAGT 1182
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1158 TCCTATGTTCCAAGCTTAGTTCAACTACAAATCAACAAACCAGGCAAAAGGAAAGAAAGT 1217
Query 1183 AACTAGTTCCATTTACACTActttttat 1210
| |||||||||||||| ||||||||||
Sbjct 1218 AGTTAGTTCCATTTACAGTACTTTTTAT 1245
> Ahg929120 jgi|Araly1|929120|scaffold_301577.1
Length=1237
Score = 876 bits (474), Expect = 0.0
Identities = 890/1083 (82%), Gaps = 60/1083 (6%)
Strand=Plus/Plus
Query 1 ATGACGACCATGGGCGATCTTCCAGGCGATTTGGTAGAGGAGATACTCTCTAGGGTTCCG 60
|||||||| || | ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 21 ATGACGACAATAGCCGATCTTCCAGGCGATTTGGTAGAGGAGATACTCTCTAGAGTTCCA 80
Query 61 CTGACATCTCTGAGGGCTATACGATCTACTTGCCAAAAGTGGAACTCTTTATCGAAAAGT 120
||||||||| |||| || | ||||||||||||| ||||||||||| |||||||||||| |
Sbjct 81 CTGACATCTTTGAGAGCAACACGATCTACTTGCAAAAAGTGGAACGCTTTATCGAAAAAT 140
Query 121 CAGATTTGTGGTAGAAAAGCAACAGCAGCAGAG-AATAAGTTTCTGGGGTTTATGATGAA 179
||||||| |||||||||||||||||||||| || || ||||| ||||||||||||||||
Sbjct 141 CAGATTTTTGGTAGAAAAGCAACAGCAGCA-AGGAAGCAGTTTATGGGGTTTATGATGAA 199
Query 180 GGATTCAAGGGTTTGTTCAAT-GAAATTTGATCTCCAAGGAATCAGAAACGACGACGGGG 238
|||||||||| |||||||||| ||| || ||||||||||||||| |||| || |||||
Sbjct 200 GGATTCAAGGCTTTGTTCAATTGAA-TTCGATCTCCAAGGAATCCGAAATGAAGACGGCA 258
Query 239 AGTTGGTTGAGCCATCTATAAAGCAAGTAAGTAAACTCGATCAAATCGAGGTCTCTCAA- 297
| || ||||| |||||||||||||||||||||| ||| | ||| ||||||| ||| ||
Sbjct 259 ACTTCGTTGATCCATCTATAAAGCAAGTAAGTATACTTAACCAAGTCGAGGTATCT-AAT 317
Query 298 GTTTTTCACTGTGACGGTTTAGTCCTATGCATCATTAAGGACAACAC-AGGGCTCTTGGT 356
|| |||||||| ||||||||| | |||||| || || ||||||| | ||| ||||||||
Sbjct 318 GTCTTTCACTGCGACGGTTTATTGCTATGCGTCCTTGAGGACAATTCGAGG-CTCTTGGT 376
Query 357 ATGGAACCCTTATTTGGGGCAAACTAGGTGGATCCATCCGAGAAACAATTACCAGATAGA 416
|||||| || |||||||||||||| ||||||||||| || ||||||| || | | | ||
Sbjct 377 ATGGAATCCGTATTTGGGGCAAACCAGGTGGATCCAACCCAGAAACACTTTC-A--T-GA 432
Query 417 AGATAGGTATGCTCTTGGATATGATAACAACCGTAACCACAAAATATTGAGGATTTTCGA 476
| | ||| | || ||||| || ||||||||||||||||| |||||||||||| |
Sbjct 433 -G---GC-ATGA-CA-GG-TATGACAAGAACCGTAACCACAAAATCTTGAGGATTTTCTA 484
Query 477 TTTGTATCCAAGCAGCAACCGCGTTTTTGGGTACGAAGTCTACGATTTTAGCTCTAATTC 536
| || ||| | | | | |||||| ||| | |||| ||||||||||||||||||||||
Sbjct 485 TGTG-ATC---G-A-C--C-GCGTTTCTGGTTTCGAAATCTACGATTTTAGCTCTAATTC 535
Query 537 ATGGAAGGTTCTTGATGTCATTCCTGAGTGGGATATACA-GTCTCATTTTCGTGGCGCGT 595
||||||||||||| |||||| |||||| ||||| ||| | | ||| | ||||| | ||
Sbjct 536 ATGGAAGGTTCTTCATGTCACTCCTGACTGGGAAATA-ATGCCTCCTCGGCGTGGTGTGT 594
Query 596 CTTTGAAAGGGAA-TGCTTATTTTCCTGCGCAAAAGA-AAGAAACAGTGGG---AGGAAT 650
||||||| ||||| | |||| |||||||| ||||||| || || |||||| |||||
Sbjct 595 CTTTGAA-GGGAAATACTTACTTTCCTGCTCAAAAGAGAACAAT-AGTGGGTGTAGGAAC 652
Query 651 AA-A-G-ACAATAAATATTGAAGATGTTCTACTTTG-TTTCGATTTTACAAGGGAGAGAT 706
|| | | | |||||| | ||||||| || || | || ||| ||||||||||| |||||||
Sbjct 653 AAGAAGGATAATAAAGAGTGAAGATTTTTTAGTCTGCTTT-GATTTTACAAGAGAGAGAT 711
Query 707 TTGGACCGCCTCTGCCACTGCCGTTTCACTCTTACAATGC-AGACTTTTTTGTGTCTCTA 765
||||||||| ||| || |||||||||||||||||||||| ||||||||| |||||||||
Sbjct 712 TTGGACCGCTTCTCCCTCTGCCGTTTCACTCTTACAATGTTAGACTTTTT-GTGTCTCTA 770
Query 766 GCTTGTGTTAGGGAAGAGCAGCTCGCTGTGTTATATCAACGCTGGGGGGCATTTGA-G-- 822
|||||||||| || |||||||||||||||||||||||||||| || ||| ||| |
Sbjct 771 TCTTGTGTTAGAGACGAGCAGCTCGCTGTGTTATATCAACGCTTGGACACATATGATGGG 830
Query 823 ACAATCGAGATTTGTGTTACAAATAAGATTGATCCCAATACGGTTTCGTGGAGCAAGTTT 882
||| ||||| ||||||||||| ||||||||||||||||| | || || ||||||| ||||
Sbjct 831 ACAGTCGAGTTTTGTGTTACAGATAAGATTGATCCCAATGCTGTGTCTTGGAGCATGTTT 890
Query 883 TTGATAAC--GTCCACTGGTTTTCCGGTTGACACTTTTT-CTGGGAGCTTTTTCATTGAT 939
|||| ||| ||| | ||||||| ||||| | || || | ||||||| |||||||| ||
Sbjct 891 TTGA-AACAAGTC-ATTGGTTTTACGGTTAA-ACCTTGTGCTGGGAGTTTTTTCATCGAC 947
Query 940 GAGGAGAAGAAAGTTGCTGTGGTTTTTGATTTAGATAG-ATATAAACCGACTGA-G-ACC 996
| ||||||||||| || |||||||| ||| ||||| | ||||||| | | | | |
Sbjct 948 CAAGAGAAGAAAGTCGCCGTGGTTTTCGATATAGAT-GTATATAAAAAGG-TCAAGGAA- 1004
Query 997 TGTCGCTACCAAATAGTTTATATTATTGGACAAGATGAATACTTCAAATCTGTCAACATG 1056
|||||||| |||| || ||| || ||||||||||||| ||||||||||||||| || ||
Sbjct 1005 TGTCGCTATCAAACAGCTTACATCATTGGACAAGATGGATACTTCAAATCTGTGAATATC 1064
Query 1057 GGA 1059
|||
Sbjct 1065 GGA 1067
> Ahg924799 jgi|Araly1|924799|scaffold_200360.1
Length=466
Score = 429 bits (232), Expect = 3e-119
Identities = 343/395 (87%), Gaps = 13/395 (3%)
Strand=Plus/Plus
Query 442 AACAACCGTAACCACAAAATATTGAGGATTTTCGATTTGTATCCAAGCAGCAACCGCGTT 501
||||||||||| |||||||| |||||||||||| || ||||||||||||| |||| || |
Sbjct 78 AACAACCGTAATCACAAAATCTTGAGGATTTTCAATCTGTATCCAAGCAGAAACCACGAT 137
Query 502 TTTGGGTACGAAGTCTACGATTTTAGCTCTAATTCATGGAAGGTTCTTGATGTCATTCCT 561
||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 138 TTTAGGTACCAAGTCTATGATTTTAGCTCTAATTCATGGAAGGTTCTTGATGTCAAACCA 197
Query 562 GAGTGGGATATACAGTCTCATTTTCGTGGCGCGTCTTTGAAAGGGAATGCTTATTTTCCT 621
|||||| ||||||| |||||| ||||||| ||||||||| |||||| |||||||||||
Sbjct 198 GAGTGGAATATACACTCTCATCAACGTGGCGTGTCTTTGAAGGGGAATACTTATTTTCCT 257
Query 622 GCGCAAAAGAAA-GAAACAGTGGGAGGAATAAAGACAATAAATATTGAAGATGTTCTACT 680
| ||| |||||| ||| | ||||||||| | |||||||||||||||||||| |
Sbjct 258 GTGCATAAGAAAAGAACC-GTGGGAGGA-----G----TAAATATTGAAGATGTTCTAGT 307
Query 681 TTGTTTCGATTTTACAAGGGAGAGATTTGGACCGCCTCTGCCACTGCCGTTTCACTCTTA 740
|||||| |||||||||| ||||||||||||||||||||||||||||| ||| |||||||
Sbjct 308 TTGTTTTGATTTTACAAAAGAGAGATTTGGACCGCCTCTGCCACTGCCATTTAACTCTTA 367
Query 741 CAATGCAGACTTTTTTGTGTCTCTAGCTTGTGTTAGGGAAGAGCAGCTCGCTGTGTTATA 800
||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 368 CAATGCAGAAAATTTTGTGTCTCTATCTTGTGTTAGGGAAGAGCAGCTCGCTATGTTATA 427
Query 801 TCAACGCTGGGGGGCATTTGAGACAATCGAGATTT 835
|||||||||||| ||||||||| | |||||||
Sbjct 428 TCAACGCTGGGGA--ATTTGAGACTTTTGAGATTT 460
> Ahg925254 jgi|Araly1|925254|scaffold_200815.1
Length=1202
Score = 246 bits (133), Expect = 3e-64
Identities = 577/776 (74%), Gaps = 92/776 (12%)
Strand=Plus/Plus
Query 322 CTATGCATCATTAAGGACAACACAG-GGCTCTTGGTATGGAACCCTTATTTGGGGCAAAC 380
|||||| || || |||||||| | | |||| ||||||||||| || ||| ||||
Sbjct 281 CTATGCGTCCTTGAGGACAACTC-GAGGCTTTTGGTATGGAATCC-------GGG-AAAC 331
Query 381 TAGGTGGATCCATCCGAGA-A-ACAATTACCAGATAG-AAGATAG-GTATGCTCTTGGAT 436
| ||||||||| |||||| | | ||| | | | | |||| | ||||||||| ||||
Sbjct 332 AAAGTGGATCCAACCGAGAGATA-AATCA-C-GCGGGCAAGA-CGCGTATGCTCTCGGAT 387
Query 437 ATG---ATAACAACCGTAACCACAAAATATTGAGGATTTTCGATTTGT-ATCCAAGCAGC 492
||| | || || |||| ||||||||| ||||||| ||||||||| | || |||| |
Sbjct 388 ATGACAAGAAGAAGCGTACCCACAAAATCTTGAGGAATTTCGATTT-TCCTCTAAGC-GG 445
Query 493 AACCGCGT-T-TT-T-GGGTACGAAGTCTACGATTTTAGCTCTAATTCATGGAAGGTTCT 548
|| | || | || | | |||||| ||||||||||||||||||||||||||||||||||
Sbjct 446 AAGAGAGTATGTTATAGTATACGAAATCTACGATTTTAGCTCTAATTCATGGAAGGTTCT 505
Query 549 TGATGTCATTCCTGA-G--TGGGATATA-CAGTCTCATTTTCGT-GGCGCGTCTTTGAAA 603
||||||| | | || | || ||||| | |||||| | | ||||||||||||||
Sbjct 506 TGATGTCCCTACGGACGACTGCCATATATCT-TCTCATAT-CAACGGCGCGTCTTTGAA- 562
Query 604 GGGAATG-CTTATTTTCCTGCGCAAAAGAAAGAAACAGTGGGAGGAATAAAGACAATAAA 662
||||| ||||||||| ||| || | |||||| || || ||| ||| ||
Sbjct 563 GGGAAACACTTATTTTCTTGC--AA--G---GAAACAC-GG-AG---TAAC--CAA-AA- 606
Query 663 TA-TTGAAGATGTTCTACTTTGTTTCGATTTTACAAGGGAGAGATTTGGACCGCCTCTGC 721
|| |||||||| || | || ||||| |||||||||| ||||| ||| | ||||||||
Sbjct 607 TACTTGAAGATCTTTTGCTATGTTTTGATTTTACAACAGAGAGCTTTCG---GCCTCTGC 663
Query 722 CACTGCCGTTTC---ACTCTTACA---ATGCAG-ACTTTTTTGTGTCTCTAGCTTGTGTT 774
| |||||||||| || ||| || ||| || | |||| ||||||||| ||||||||
Sbjct 664 CTCTGCCGTTTCGCGACACTTTCAGTGATGGAGGAGATTTT-GTGTCTCTATCTTGTGTT 722
Query 775 AGGGAAGAGCAGCTCGCTGTGTTATATCAACGCTGGGGGG-C--ATTTGA-GACAATCGA 830
| ||||| |||||||| || ||||||||||||| || | | | | | |||||||
Sbjct 723 AAAGAAGAACAGCTCGCGGTCTTATATCAACGCTATTGGAACCCACCT-ACGGCAATCGA 781
Query 831 GAT-TTGTGTTACAAATAAGATTGATCC-C-AA-TACGGTTTCGTGGAGCAAGTTTTTGA 886
||| || |||||| |||||||||||| | || | |||| ||||||| ||||||||| |
Sbjct 782 GATCTT-TGTTACGAATAAGATTGATGATCTAAATGCGGTGTCGTGGATCAAGTTTTTAA 840
Query 887 TAAC-GTCCACTGGTTTTC-CGGT-TGACACTTTTTCTGGGAGCTTTTTCATTGATGAGG 943
||| |||||| ||||| |||| || ||| |||||||| ||||||||||| | |
Sbjct 841 -AACTGTCCACCAGTTTTTACGGTCTGTG--TTTGTCTGGGAGTTTTTTCATTGACCAAG 897
Query 944 AGAAGAAAGTTGCTGTGGTTTTTGATTTAGA-T-AGATAT-AA--ACCGACTGA-GAC-- 995
|||||||||||||||||||||| ||| |||| | | || || || || | | |
Sbjct 898 AGAAGAAAGTTGCTGTGGTTTTCGATCTAGAGTTACCTACCAATGACA-ACAGTCGTCGT 956
Query 996 C-T-GTCGCTACCAAATAGTTTATATTATTGGACAAGATGAATACTTCAAATCTGT 1049
| | |||||||||||| || | | || |||||| |||||| |||||| ||||||||
Sbjct 957 CGTCGTCGCTACCAAACAGCTCACATCATTGGAGAAGATGGATACTTGAAATCTGT 1012
> Ahg907234 jgi|Araly1|907234|Al_scaffold_0002_315
Length=1137
Score = 135 bits (73), Expect = 6e-31
Identities = 775/1097 (71%), Gaps = 115/1097 (10%)
Strand=Plus/Plus
Query 1 ATGACGACCATGGGCGATC-TTC-CAGGCGATTTGGTAGAGGAGATACTCTCTAGGGTTC 58
||||||| ||| ||||| ||| ||| | |||||||||||||||||||||||||||||
Sbjct 1 ATGACGATGATGTCCGATCTTTCGAAGG-G-TTTGGTAGAGGAGATACTCTCTAGGGTTC 58
Query 59 CGCTGACATCTCTGAGGGCTAT-ACGATCTACTTGCCAA-AAGTGGAACTCTTTATCGAA 116
| | || |||||||| ||| | | ||||||||||| || || ||||||| |||| | ||
Sbjct 59 CAATAACTTCTCTGAGAGCTGTGA-GATCTACTTGCAAACAA-TGGAACTGTTTAACCAA 116
Query 117 A-AGTC--AGATTTGTGGTAGAAAAGCAACA-GCAGCAGAG-AAT-AAG--TTTCTGGG- 167
| | || || ||| |||| |||| | | | || || ||| ||| | ||
Sbjct 117 AGA-TCCTAGCTTTACAA-AGAA--GCAATGTG-ATAA-AGCAACCAAGGGTTTGTTGGT 170
Query 168 GTTTATGATGAAGGATTC-AAGGGTTTGTTCAATGAAAT-TTGATCTCCAAGGAATC-AG 224
| | ||| | || ||||| |||| | |||| |||| | || ||||||| |||||| |
Sbjct 171 GATCATGCTTAATGATTCTAAGG-TCTGTTTGATGAG-TGTTAATCTCCATGGAATCCA- 227
Query 225 AAACGACGACGGGGAGTTGGTTGAGCCATCTATAAAGCAAGTA-A-GTAAACTCGATCAA 282
|||| || | | | | |||||| ||||||||||||| ||| | || |||| |||||
Sbjct 228 AAACCACAAAGACG--T-GGTTGATCCATCTATAAAGC--GTATATGTGAACTTAATCAA 282
Query 283 ATCGAGGTCTCTCAA-GTTTT-TCACTGTGACGGTTTAGTCCTATGC-ATCATTAAGGAC 339
|| |||| ||| || || | | | ||||| || ||| | ||||| | || ||||||
Sbjct 283 GTCAAGGTATCT-AACGTCATCT-ATTGTGATGGCTTATTGTTATGCCA-CACCAAGGAC 339
Query 340 -AA--CAC-AG--GGCTCTTGGTATGGAACCCTTATTTGGGGCAAACTAGGTGGATCCAT 393
|| ||| | ||||| |||| ||| |||| ||| |||| ||||| || |||||| |
Sbjct 340 GAAGACACTACTAGGCTCGTGGTTTGGGACCCGTATATGGGTCAAACCAGTTGGATCAAA 399
Query 394 CCGAGAAACAATTACCAGATAGAAGATAGGTAT-GCTCTTGGATATGATAACAACCGTAA 452
|| |||| | |||||| | | ||||| || | | | | ||||| || || ||| ||
Sbjct 400 CCTAGAATCCCTTACCACAGATCAGATATGT-TCGGTATCGGATACGACAAGAACAACAA 458
Query 453 CCACAAAATATTGAGGATTTTCGATTTGTA-TCCAAGCAGCAACCGCGTTTTTGGGTACG 511
| ||||||| |||||| ||||| |||| | | || ||| | | ||||| |
Sbjct 459 CTACAAAATTTTGAGGGTTTTC--TTTG-AGTTTGT-CAACAAT-G--TA---GGGTATG 508
Query 512 AAGTCTACGATTTTA-GCTCTAATTCATGGAAGGTTCTTGATGTCATTCCTGAGTGGGAT 570
|| |||||||||||| | ||||| ||||||| ||||||| | ||| | | || ||
Sbjct 509 AAATCTACGATTTTAAG-TCTAACTCATGGAGGGTTCTT-AC--CAT-C-TC-GTCTAAT 561
Query 571 ATACAGTCTCATTTTCGTGGCGCGTCTTTGAAAGGGAATGCTTA-TTTTCCTGCGCAAAA 629
||| || | | || |||| ||| |||||||| || |||| |||| ||| |||
Sbjct 562 ATAGTGTTTTACAAACGAGGCGTGTCATTGAAAGGAAACACTTACTTTTT-TGCTCAA-- 618
Query 630 GAAAGAAACAGTGGGAGGAATAAAGACAATAAATATTGAA-GATGTTCTACTTTGTTTCG 688
||||||| || || | |||| | || ||| ||| | |||| |||| |||||||
Sbjct 619 GAAAGAATCAA----AGT--TGAAGA-AGTAGATAAAGAATG-TGTTTTACTCTGTTTCG 670
Query 689 ATTTTACAAGGGAGAGATTTGGACCGCCTCTGCCA-CTGCCGTTTCACTCTTACAAT-GC 746
|||||||||| ||||||||||||||| |||||| | || |||||||||| | | | |
Sbjct 671 ATTTTACAAGAGAGAGATTTGGACCGGCTCTGC-ATCTTCCGTTTCACTGTGATGTTAGA 729
Query 747 -A-GACTTTTTTGTGTCTCTAG-CTTGTGTTAGGGAAGAGCAGCTCGCTGTGTTATATCA 803
| || | | || || ||| | ||| ||||| |||||||| || || ||||||| |||
Sbjct 730 TATGA-TGATATG-GT-TCT-GTCTTCAGTTAGAGAAGAGCATCTTGCAGTGTTATTTCA 785
Query 804 ACGCTGGGGGGCATTTGAGACAATCGAGATTTGTG-TTACAAATAAGATTGATCCCAATA 862
|| | | || | ||| | ||||| || | |||||| ||||||||| ||||||
Sbjct 786 GCGTTTAGATACAGATAAGA---TGGAGATATG-GATTACAACTAAGATTGAGCCCAATG 841
Query 863 CGGTTTCGTGGAGCAAGTT-TT-----TGA-TA--ACGTC---CACTGGTTTTCCGGTTG 910
|||| || |||| |||||| || ||| || | | | |||||||||| | |||
Sbjct 842 CGGTGTCATGGAACAAGTTCTTAGCCGTGAATACGAAGACAATCACTGGTTTTGAGTTTG 901
Query 911 ACACTTTTTC-TGGGAGCTT-TTTCATTGATGAGGAGAAGAAAGTTGCTGTGGTTTTTGA 968
| || | | |||| || ||| ||||||||||||||||||| || ||| ||| |||
Sbjct 902 AGG-TTGAACCTAGGAGTTTCTTTG-TTGATGAGGAGAAGAAAGTGGCAGTGATTTGTGA 959
Query 969 TTTAGATAGATAT-AAACCGACTGAGACCTGTCGCTACCAAATAGTTTATATTATTGGAC 1027
| || | |||| | |||||||| ||||| | | |||| ||| || || || |||||
Sbjct 960 TATACACAGAT-TCAAACCGACCAAGACCGGCCTCTACAAAACAGCTTGCATCATTGGGG 1018
Query 1028 AAGATGAATACTTCAAA 1044
| |||| |||||| |||
Sbjct 1019 AGGATGGATACTTGAAA 1035
> Ahg929654 jgi|Araly1|929654|scaffold_302111.1
Length=742
Score = 87.9 bits (47), Expect = 2e-16
Identities = 73/84 (87%), Gaps = 7/84 (8%)
Strand=Plus/Plus
Query 17 ATCTTCCA-GGCGATTTGGTAGAGGAGATACTCTCTAGGGTTCCGCTGACATCTCTGAG- 74
|||||||| || ||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 31 ATCTTCCATGG-GATGTGGTAGAGGAGATACTCTCTAGGGTTCCGGTGACATCTTTGAGA 89
Query 75 -GGCTATACGATCTACTTGCCAAA 97
|| || | ||||||||||| |||
Sbjct 90 CGGTTA-A-GATCTACTTGC-AAA 110
> Ahg925743 jgi|Araly1|925743|scaffold_201304.1
Length=1229
Score = 67.6 bits (36), Expect = 2e-10
Identities = 43/46 (93%), Gaps = 2/46 (4%)
Strand=Plus/Plus
Query 924 GAGCTTT-TTCATTGATGAGGAGAAGAAAGTTGCTGTGGTTTTTGA 968
||| ||| |||||||| |||||||||||||||||||||||||||||
Sbjct 975 GAG-TTTCTTCATTGACGAGGAGAAGAAAGTTGCTGTGGTTTTTGA 1019
> Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159
Length=1608
Score = 67.6 bits (36), Expect = 2e-10
Identities = 43/46 (93%), Gaps = 2/46 (4%)
Strand=Plus/Plus
Query 924 GAGCTTT-TTCATTGATGAGGAGAAGAAAGTTGCTGTGGTTTTTGA 968
||| ||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1371 GAG-TTTCTTCATTGACGAGGAGAAGAAAGTTGCTGTGGTTTTTGA 1415
> Ahg331355 jgi|Araly1|331355|fgenesh1_pm.C_scaffold_8000698
Length=1167
Score = 58.4 bits (31), Expect = 1e-07
Identities = 38/41 (93%), Gaps = 1/41 (2%)
Strand=Plus/Plus
Query 924 GAGCTTTTTCATTGATGAGGAGAAGAAAGTTGCTGTG-GTT 963
||| ||||||||||||||||||||||||||||| ||| |||
Sbjct 978 GAGTTTTTTCATTGATGAGGAGAAGAAAGTTGCCGTGTGTT 1018
> Ahg315612 jgi|Araly1|315612|fgenesh1_pm.C_scaffold_2000645
Length=966
Score = 56.5 bits (30), Expect = 5e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 30 TTTGGTAGAGGAGATACTCTCTAGGGTTCC 59
||||||||||||||||||||||||||||||
Sbjct 21 TTTGGTAGAGGAGATACTCTCTAGGGTTCC 50
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53592974715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5