BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13682.1
Length=2241
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478766 jgi|Araly1|478766|fgenesh2_kg.3__1467__AT3G13682.1 2159 0.0
> Ahg478766 jgi|Araly1|478766|fgenesh2_kg.3__1467__AT3G13682.1
Length=2187
Score = 2159 bits (1169), Expect = 0.0
Identities = 1261/1306 (97%), Gaps = 4/1306 (0%)
Strand=Plus/Plus
Query 904 GGTGTAGCTAAAGATTCAGAGGAAAGAAAACTTTTTGACTGGCACCTTGCTAACTTGGAA 963
|||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 871 GGTG-AACTAAAGATTCAGAGGAAAGAAAACTTTTTGACTGGCATCTTGCTAACTTGGAA 929
Query 964 TATGCTAACGCTGGGTGTCTTTCGAATCTTT-CAGCTGCTTACTGGGATCAGGATGATCC 1022
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 930 TATGCTAACGCTGGGTGTCTTTCGAATCTTTCCAGCTGCTTACTGGGATCAGGATGATCC 989
Query 1023 TTACGAAATGGGTGGGGATCATTGTTTTCTTGCTGGTGGAAACTGGAGACTGATAAATGC 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 TTACGAAATGGGTGGGGATCATTGTTTTCTTGCTGGTGGAAACTGGAGACTGATAAATGC 1049
Query 1083 ATTAGCTGAAGGGCTACCCATAATCTATGGGAAAAGCGTTGACACTATCAAGTATGGAGA 1142
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 ATTAGCTGAAGGGGTACCCATAATCTATGGGAAAAGCGTTGACACTATCAAGTATGGAGA 1109
Query 1143 CGGAGGAGTTGAAGTCATTTCTGGTAGCCAGATATTTCAAGCTGACATGATTCTTTGCAC 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 CGGAGGAGTTGAAGTCATTTCTGGTAGCCAGATATTTCAAGCTGACATGATTCTTTGCAC 1169
Query 1203 TGTGCCGCTTGGGGTCTTGAAGAAGAGATCTATCAAGTTTGAGCCGGAGTTACCTAGAAG 1262
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1170 CGTGCCGCTCGGGGTCTTGAAGAAGAGATCTATCAAGTTTGAGCCAGAGTTACCTAGAAG 1229
Query 1263 AAAACAAGCAGCAATTGACAGGTTGGGGTTTGGCCTTCTGAACAAAGTTGCCATGCTTTT 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 AAAACAAGCAGCAATTGACAGGTTGGGGTTTGGCCTTCTGAACAAAGTTGCCATGCTTTT 1289
Query 1323 CCCATCTGTCTTTTGGGGTGATGAGTTAGACACGTTTGGATGCCTCAACGAGAGTAGCAT 1382
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1290 CCCGTCTGTCTTTTGGGGTGATGAGTTAGACACGTTTGGATGCCTCAACGAGAGCAGCAT 1349
Query 1383 CAACCGAGGAGAGTTTTTTCTATTCTATGCCTACCATACAGTCTCTGGTGGCCCTGCCTT 1442
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1350 CAACCGAGGAGAGTTCTTTCTGTTCTACGCCTACCATACAGTCTCTGGTGGCCCTGCCTT 1409
Query 1443 GGTTGCCTTAGTTGCTGGAGAAGCTGCTCAACGATTTGAGTGCACAGAACCATCTGTTTT 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 GGTTGCCTTAGTTGCTGGAGAAGCTGCTCAACGATTTGAGTGCACAGAACCATCTGTTTT 1469
Query 1503 ACTTCACCGTGTTTTaaaaaaaCTCAGAGGCATATATGGTCCTAAAGGTGTTGTTGTGCC 1562
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1470 ACTTCACCGTGTTTTGAAAAAACTCAGAGGCATATATGGTCCTAAAGGTGTTATTGTGCC 1529
Query 1563 TGACCCAATACAGACGGTTTGCACTAGATGGGGAAGTGATCCTTTGTCATATGGGTCATA 1622
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1530 TGACCCAATACAGACGGTTTGCACTATATGGGGAAGTGATCCTTTGTCATATGGGTCATA 1589
Query 1623 TTCTCATGTAAGGGTTGGTTCATCTGGTGTGGACTATGACATTCTTGCTGAAAGTGTTAG 1682
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1590 TTCTCATGTAAGGGTTGGTTCATCTGGCGTGGACTACGACATTCTTGCTGAAAGTGTTAG 1649
Query 1683 TAACCGTCTATTCTTCGCTGGTGAGGCCACGACAAGGCAACATCCAGCCACAATGCACGG 1742
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1650 TAACCGTCTGTTCTTTGCTGGTGAGGCCACGACAAGGCAACATCCAGCCACAATGCACGG 1709
Query 1743 TGCCTACTTAAGTGGTTTAAGAGAAGCCTCAAAGATTCTACATGTTGCGAATTATCTTCG 1802
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1710 TGCCTACTTAAGCGGTTTAAGAGAAGCCTCGCAGATTCTACATGTTGCGAATTATTTTCG 1769
Query 1803 CAGTAATCTAAAGAAACCTGTTCAAAGATATAGTGGAGTTAACATAAACGTTCTTGAAGA 1862
|||||||| ||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 1770 CAGTAATCCAAAGAAACCTGTTCAAAGATACAGTGGAGTTAACATGAATGTTCTTGAAGA 1829
Query 1863 TATGTTCAAAAGACCCGACATAGCAA-TAGGGAAGTTGTCATTTGTCTTCAACCCATTAA 1921
| ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||
Sbjct 1830 TCTGTTCAAAAGACCCGACATTGCAACT-GGGAAGTTGTCATTTGTCTTCAACCCATTAA 1888
Query 1922 CCGACGATCCGAAATCGTTTGGATTAGTCAGAGTTTGTTTTGACAACTTTGAAGAAGATC 1981
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1889 CCGAGGATCTGAAATCGTTTGGATTAGTCAGAGTTTGTTTTGACAACTTTGAAGACGATC 1948
Query 1982 CAACCAATCGTCTTCAGCTTTACACTATTCTTTCCCGGGAGCAAGCTAACAAGATCAAAG 2041
|||| ||||||||||||||||||| |||||||||| |||||||||||||||||||| |||
Sbjct 1949 CAACGAATCGTCTTCAGCTTTACAGTATTCTTTCCAGGGAGCAAGCTAACAAGATCCAAG 2008
Query 2042 AATTGGACGAAAATAGTAATGAGAGCAAACTATCGTGTCTGATGAATACTCTTGGATTAA 2101
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2009 AATTGGACGAAAGTAGTAATGAGAGCAAACTGTCGTGTCTGATGAATACTCTTGGATTAA 2068
Query 2102 AGCTAATGGGTGCCAACTCAGTACTAGACACAGGTGGTGCGTTGATCAGTGTCATAGCTA 2161
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2069 AGCTAATGGGGGCCAACTCAGTACTAGACACAGGTGGTGCGTTGATCAGTGTCATAGCTA 2128
Query 2162 ACGCACGCAGAGGCAGAAGCAGGTCCCACGTGGTTGCAGGGCAATG 2207
||||||||||||||||||||||| |||| || ||||||||||||||
Sbjct 2129 ACGCACGCAGAGGCAGAAGCAGGACCCATGTTGTTGCAGGGCAATG 2174
Score = 1441 bits (780), Expect = 0.0
Identities = 845/877 (96%), Gaps = 2/877 (0%)
Strand=Plus/Plus
Query 1 ATGAATTCTCCGGCGTCGGATGAAACGGCTCCGAGGAGGAACAGGAGAAAAGTAAGTAGG 60
||| || ||||||||| |||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGATGCTCCGGCGTTAGATGGAACGGCTCCGAGGAGGAACAGGAGGAAAGTAAGTAGG 60
Query 61 AAGAACTACGATGAGAATGCGATGGATGAATTGATTGAGAAGCAATTAGGTGGAAAGGCG 120
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 61 AAGAACTACGATGAGAATGCGATGGATGATTTGATTGAGAAGCAATTTGGTGGAAATTCG 120
Query 121 AAGAAAAAGTACAGGACGAAGCAAGATTTGGAGAAAGAGACTGAGACCGAGGCTCTGATA 180
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 121 AAGAAAAAGTACAGGACGAAGCAAGATTTGGAGAAAGAAACTGAGACTGAGGCTCTGATA 180
Query 181 GCTCTGTCCGTAGGTTTCCCAATCGACGAATTGCTTGAGGAAGAGATTCGAGCTGGAGTT 240
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GCTTTGTCCGTAGGTTTCCCAATCGACGAATTGCTTGAAGAAGAGATTCGAGCTGGAGTT 240
Query 241 GTAAGAGAATTAG-GCGGGAAAGAGCAGAACGATTACATTGTTGTTCGGAATCATATAGT 299
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTAAGAGAATT-GTGCGGGAAAGAGCAGAACGATTACATTGTTGTTCGGAATCATATAGT 299
Query 300 AGCTAGGTGGAGGGGTAATGTTGGAATTTGGCTACTCAAAGATCAGATTAGAGAAACTGT 359
||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 300 AGCTAGGTGGAGGAGTAATGTTGGGATTTGGCTACTTAAAGATCAGATTAGAGAAACTGT 359
Query 360 TAGTAGTGACTTTGAGCATTTGATTTCAGCTGCTTATGATTTTCTCTTGTTTAATGGATA 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAGTAGTGACTTTGAGCATTTGATTTCAGCTGCTTATGATTTTCTCTTGTTTAATGGATA 419
Query 420 CATCAATTTTGGGGTTTCTCCATTGTTTGCTCCTTATATTCCTGAAGAGGGTACTGAGGG 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 CATCAATTTTGGGGTTTCTCCATTGTTTGCTCCTTATATTCCTGAAGAGGGTACGGAGGG 479
Query 480 ATCAGTCATTGTTGTTGGTGCTGGACTTGCTGGTTTGGCTGCTGCTAGACAGCTTTTGTC 539
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 480 ATCAGTCATTGTTGTTGGTGCTGGTCTTGCTGGTTTGGCTGCTGCAAGACAGCTTTTGTC 539
Query 540 ATTTGGGTTCAAGGTTCTTGTTTTAGAAGGTAGGAGTCGTCCTGGTGGACGAGTGTACAC 599
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATTTGGGTTTAAGGTTCTTGTTTTAGAAGGTAGGAGTCGTCCTGGTGGACGAGTGTACAC 599
Query 600 TCAGAAGATGGGAGGTAAGGATAGATTTGCAGCTGTTGAACTCGGTGGTAGTGTAATCAC 659
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 TCAGAAGATGGGAGGTAAGGATAGATTTGCAGCTGTTGAACTCGGTGGCAGTGTAATCAC 659
Query 660 GGGTTTACATGCGAACCCACTTGGAGTTCTTGCGAGACAGCTTTCTATTCCTCTTCACAA 719
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 GGGTTTACATGCGAACCCACTTGGTGTTCTTGCGAGACAGCTTTCTATTCCTCTTCACAA 719
Query 720 GGTTAGAGACAACTGTCCTTTGTATAATTCAGAGGGAGTACTTGTCGATAAAGTAGCTGA 779
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 720 GGTTAGAGACAACTGTCCTTTGTATAATTCAGAGGGAGCACTTGTCGATAAGGTAGCTGA 779
Query 780 CTCCAATGTTGAGTTTGGTTTCAACAAACTGCTTGACAAGGTCACAGAAGTAAGGGAGAT 839
|||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 780 CTCCAATGTTGAGTTTGGTTTCAATAAACTGCTTGACAAGGTCACCGAAGTGAGGGAGAT 839
Query 840 GATGGAAGGGGCAGCTAAGAAGATTTCTTTGGGAGAA 876
||||||||||||||||||||||||||||||||| |||
Sbjct 840 GATGGAAGGGGCAGCTAAGAAGATTTCTTTGGGTGAA 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84369892675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5