BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13710.1
Length=2294
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478769 jgi|Araly1|478769|fgenesh2_kg.3__1470__AT3G13710.1 2416 0.0
Ahg929127 jgi|Araly1|929127|scaffold_301584.1 632 3e-180
> Ahg478769 jgi|Araly1|478769|fgenesh2_kg.3__1470__AT3G13710.1
Length=2131
Score = 2416 bits (1308), Expect = 0.0
Identities = 1687/1862 (91%), Gaps = 57/1862 (3%)
Strand=Plus/Plus
Query 218 AAAACAATAAATCAGAACAGTTTTACATTATTTCAATCAAGTCATCTTATTCACTAATGG 277
||||| ||||||||| |||||||||||||||||| ||| |||| ||| | | | |||||
Sbjct 145 AAAACTATAAATCAGGACAGTTTTACATTATTTCTATCTAGTCCTCTGACTAAATAATGA 204
Query 278 CGAACAACGACGAGATTACCACGTCGTCTCATGCATCTCCGGCAGTGAATCACGAGTCTA 337
|||||||| ||| |||| | || || || | |||||||||||||||||||||||||||
Sbjct 205 CGAACAACAACGCGATT--C-CGACG--TCGT-CATCTCCGGCAGTGAATCACGAGTCTA 258
Query 338 TCTCACGCGCTAAGCAACGTATCAAAGACGGACTAGCCACGCGCCGCTCCTGGAGGGTGA 397
|||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| ||||
Sbjct 259 TCTCACGCGCCAAGCAACATATCAAAGACGGACTAGCCACGCGCCGCCCCTGGAGAGTGA 318
Query 398 TGTTCGATTTACACTCCACGGGACTACCTCACGGCGTCTCCGATGTTTTCTCAAGAATCA 457
|||||||||| ||||||| |||||||||||||||||||||||||| |||| |||||| ||
Sbjct 319 TGTTCGATTTCCACTCCATGGGACTACCTCACGGCGTCTCCGATGCTTTCACAAGAACCA 378
Query 458 AGACAAATCTTGCTTACTTCCGTAGTAATTACGCAATCGTAATCTTGAACGTCATATTCT 517
|||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||
Sbjct 379 AGACGAATCTTGCTTACTTCCGGAGTAATTACGCAATCGTAGTCTTGAACGTCATCTTCT 438
Query 518 TCAGCTTGATTTGGCATCCGACCTCGCTCATCGTCTTTACCGGTTTGGTTTTCCTATGGA 577
|||||||||||||||||||||| |||||||||||||| | || ||||||||||||||||
Sbjct 439 TCAGCTTGATTTGGCATCCGACATCGCTCATCGTCTTCGCAGGCTTGGTTTTCCTATGGA 498
Query 578 TCTTCCTTTATTTTCTCCGTGATGTGCCTCTCAAGGTGTTCAGGTTTCAAATCGACGATC 637
|||||||||| || |||||||| | ||||||||| |||||| | ||||| ||||||||||
Sbjct 499 TCTTCCTTTACTTCCTCCGTGACGAGCCTCTCAAAGTGTTCCGATTTCAGATCGACGATC 558
Query 638 GTGCGGTCTTGATTGGTCTATCGGTGATTACCATCGTTCTACTTCTATTGACCAACGCGA 697
|||||||| |||||||| ||||||| || ||||||||||| || || |||||||||||||
Sbjct 559 GTGCGGTCCTGATTGGTTTATCGGTTATAACCATCGTTCTTCTCCTGTTGACCAACGCGA 618
Query 698 CGTTTAATATTGTTGCGGCGTTGATGGCCGGAGCTGTGTTGGTTCTGATCCATGCGGTGA 757
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 619 CGTTTAATATTGTTGCGGCGTTGGTGGCCGGAGCTGTGTTGGTTCTGATCCATGCGGTGG 678
Query 758 TTAGGAAGACGGATGATCtttttttGGATGAAGAAGCGGCGACGACTGAGACTTCAGGAC 817
||||||||||||| |||||||| ||||||||||| || ||||||||||| || |||||||
Sbjct 679 TTAGGAAGACGGAGGATCTTTTCTTGGATGAAGAGGCAGCGACGACTGAAACGTCAGGAC 738
Query 818 TGACGTCACACCCTTCGTCTTAAAACGATTGATCTCCATTTTTATGTATATTCTATTGTT 877
|||||||||||||||||||||||||| || |||||| | ||||||||||||| |||||||
Sbjct 739 TGACGTCACACCCTTCGTCTTAAAACAATCGATCTCGAATTTTATGTATATTATATTGTT 798
Query 878 TTTGATCATCTTATGTGTAATTATAGTTTATGGTGTAACCGTGTAAGTTTGGTTTGATTC 937
|||||| ||| | ||||||| || | |||| | | |||||||||||| || ||
Sbjct 799 TTTGATAATC-T-TGTGTAA-TA-A-TTTA-----T-A--GTGTAAGTTTGG-TT--TT- 841
Query 938 TCTCTCTGTTTTTAAGTTTTGAAGTATGAACAAAC-T--TAAT-AATGTCAAAGTCTTCG 993
| | | || ||||||||||| ||||||| | | |||| ||||| ||||||||||
Sbjct 842 T-T-T-TG------AGTTTTGAAGTTTGAACAAGCTTAATAATGAATGTTAAAGTCTTCG 892
Query 994 CTTCTTGTTTTTGGCGGGCTGCTTACTTTTATCACTTTTTGGCGCCTTATTGGGCCATTC 1053
| ||| ||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 893 C--CTTTTTTTTGGCGGGCTGCTTACTTTTATAACTTTTTGTCGACTTATTGGGCCATTC 950
Query 1054 ATTAAGGCCCAATAGTA-TCAGCCCATAAAATTCAAAAAGGAACATATTTTTACATTTAA 1112
|||||||||||||| | |||||||||||||||| |||||| | | | | |||||
Sbjct 951 ATTAAGGCCCAATA-AACTCAGCCCATAAAATTCGAAAAGG-A-A-A---GT--GTTTAA 1001
Query 1113 ACAGTGTGTCTCACACTTCCATTTACACGTCAGCTCTCTTCGCCGGCGCT-TAATACAAC 1171
|||||| | ||||||| |||||||||||||||||||||||||||||| | || | ||||
Sbjct 1002 ACAGTGCG--TCACACTACCATTTACACGTCAGCTCTCTTCGCCGGCG-TCTATTGCAAC 1058
Query 1172 CGTCAACCTCGCCGCCGGCTAGAG--GAAAATGGCGTATCACCAACCGTACGATCCTTTC 1229
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1059 CGTCAACCTCGCCGCCGGCCAGAGAAAAAAATGGCGTATCACCAACCGTACGATCCTTTC 1118
Query 1230 TACGTCTATCAACTTCATTCTCATCCTCATCATCTTCCGCCGCAGCTGCCACTGCTCGCC 1289
||||||||||||| ||||| |||||| ||||||||||||||||||||||||| | |||||
Sbjct 1119 TACGTCTATCAACCTCATTATCATCCACATCATCTTCCGCCGCAGCTGCCACAGTTCGCC 1178
Query 1290 GACGAACCTGGGGCGATTAACACTCTCTTTGTCTCTGGCTTGCCTAATGACGTTAAGGCT 1349
||||||||||||||||| |||||||||||||||||||| |||||||| || ||||| |||
Sbjct 1179 GACGAACCTGGGGCGATAAACACTCTCTTTGTCTCTGGTTTGCCTAACGATGTTAAAGCT 1238
Query 1350 CGTGAGATCCACAATCTCTTCCGTCGTCGTCATGGATTCGAATCTTGTCAGCTCAAGTAC 1409
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1239 CGTGAGATCCACAATCTCTTCCGTCGCCGTCATGGATTCGAATCTTGTCAGCTCAAGTAC 1298
Query 1410 ACTGGACGCGGTGACCAGGTTGTGGCATTTGCAACATTCACGAGTCATAGATTCGCCT-T 1468
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1299 ACTGGACGCGGCGACCAGGTTGTGGCATTTGCAACATTCACGAGTCATAGATTCG-CTAT 1357
Query 1469 GGCTGCAATGAATGAGCTAAATGGTGTGAAATTTGATCCTCAAACAGGATCAAATCTACA 1528
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1358 GGCTGCAATGAATGAGCTAAATGGTGTGAAATTTGATCCTCAAACAGGATCAACTCTACA 1417
Query 1529 TATAGAACTAGCTAGATCAAACTCTAGAAGAAAAGAAAGGCCAGGAAGTGGACCTTATGT 1588
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1418 TATAGAACTAGCTAGATCAAACTCTAGAAGAAAAGAAAGGCCAGGAAGTGGGCCTTATGT 1477
Query 1589 TGTGATTGATAACAGAAACAAGGAAATTTCTAAGTCTCAGGATGACCAGAGTGATGAAGG 1648
||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 1478 TGTGATTGATAACAGAAACAAAGAACTGTCTAAGTCTCAGGATGACCAGAGTGATGAAGG 1537
Query 1649 GGATAGCGATCCAGATGAGGTGCAGGAACCTGGAAATAGCGATTCTCCAAAGGAAAACGA 1708
|||||||||||| ||||||| |||||||||| || ||||||| |||||||||||||||||
Sbjct 1538 GGATAGCGATCCTGATGAGGCGCAGGAACCTCGAGATAGCGAGTCTCCAAAGGAAAACGA 1597
Query 1709 TACTACCAAAAGCGAAGCGGATTCTGAGCCAGATAGTAAAGCACCATCTGCTAATGGGCA 1768
|| | |||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1598 TAATGCCAAAAGCGAAGCGGATTCTGAGCCAGATAGTAAAGCAACATCCGCTAATGGGCA 1657
Query 1769 CTTAGAGAAAGCATCTGAAGGAGGTTCTGGTGCTCGAGCTTGTTCGACCTTGTTTATAGC 1828
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1658 CTTAGAGAAAGCATATGAAGGAGGTTCTGGTGCTCGAGCTTGTTCGACATTGTTTATAGC 1717
Query 1829 TAATCTAGGGCCTAATTGTACAGAAGATGAACTCAAACAACTCCTATCTAGATATCCTGG 1888
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||
Sbjct 1718 TAATCTAGGGCCTAATTGTACAGAAGATGAACTTAAACAACTCCTCTCTAGATATTCTGG 1777
Query 1889 TTTCCACATTTTAAAAATCCGAGCTAGAGGCGGAATGCCGGTTGCATTTGCTGATTTTGA 1948
|||| |||| ||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1778 TTTCAACATCTTAAAGATGCGAGCTAGAGGCGGAATGCCGGTTGCGTTTGCTGATTTTGA 1837
Query 1949 GGAAATCGAGCAAGCTACTGATGCCATGAATCATCTTCAAGGGAACCTCTTATCCTCTTC 2008
||||||||||||||||||||||||||||||| | ||||||||| | ||||||||||||||
Sbjct 1838 GGAAATCGAGCAAGCTACTGATGCCATGAATGAACTTCAAGGGCATCTCTTATCCTCTTC 1897
Query 2009 AGACCGAGGCGGCATGCATATAGAATATGCAAGATCAAAGATGAGGAAACAGTAAAAGAT 2068
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1898 AGACCGAGGCGGCATGCATATAGAATATGCAAGATCAAAGATGAGGAAACAGTAAA-GAT 1956
Query 2069 TA 2070
||
Sbjct 1957 TA 1958
Score = 241 bits (130), Expect = 2e-62
Identities = 162/177 (92%), Gaps = 4/177 (2%)
Strand=Plus/Plus
Query 2115 TAATGTACCATATGCCAATGGTAGTCTCTTATGAAAAC-AAGATATATAGAGATCATAAG 2173
|||||||||| |||||||||||| |||||| ||||||| || ||||||||||||||||||
Sbjct 1957 TAATGTACCACATGCCAATGGTATTCTCTTCTGAAAACGAA-ATATATAGAGATCATAAG 2015
Query 2174 CAAATGAAAGCTGTATTTCTT-ATTTTAAATCTTCACTTACTATTTGTTGTCATGAAGAT 2232
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 2016 CAAATGAAAGCTGTATTTCTTTATTTTAAATCCCCACTTACTATTTGTTGTCATGAAGAT 2075
Query 2233 GAATCCTTCTATGCTGACACTGACTTAAGAGATACATATGAATATATTTATTCAAGA 2289
| ||| |||||||||||||||||||||||| |||| | | ||||| |||||||||||
Sbjct 2076 GGATC-TTCTATGCTGACACTGACTTAAGAAATACGTGTTAATATTTTTATTCAAGA 2131
Score = 80.5 bits (43), Expect = 5e-14
Identities = 49/52 (94%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 142 ACACCATCTAATTTATTTGGTTTTATTCCATATGCAAATTCAAGAGACCTTC 193
||| |||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 93 ACATCATCCAATTTATTTTGTTTTATTCCATATGCAAATTCAAGAGACCTTC 144
> Ahg929127 jgi|Araly1|929127|scaffold_301584.1
Length=607
Score = 632 bits (342), Expect = 3e-180
Identities = 517/599 (86%), Gaps = 21/599 (4%)
Strand=Plus/Plus
Query 265 TATTCACTAATGGCGAACAACGACGAGATTACC-ACGTCGTCTCATGCATCTCCGGCAGT 323
|||| ||||||| ||||| ||| | |||| || |||||||||||||||||||||| ||
Sbjct 13 TATT-ACTAATGACGAACTACGGTGCGATT-CCGACGTCGTCTCATGCATCTCCGGTGGT 70
Query 324 GAATCACGAGTCTATCTCACGCGCTAAGCAACGTATCAAAGACGGACTAGCCACGCGCCG 383
| ||| ||||| |||||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct 71 GGATCTTGAGTCCCTCTCACGCGCCAAGCACCGTATCAAAGCCGGACTAGCCACGCGCCG 130
Query 384 CTCC-TGGAGGGTGATGTTCGATTTACACTCCACGGGACTACCTCACGGCGTCTCCGATG 442
||| ||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 131 -TCCTTGGAGAGTGATGTTCGATTTCCACTCCATGGGACTACCTCACGGCGTCTCCGATG 189
Query 443 TTTTCTCAAGAATCAAGACAAATCTTGCTTACTTCCGTAGT-AATTACGCAATCGTAATC 501
|||| ||||||||||||| ||||||||||||||||||| | || |||||| |||| ||
Sbjct 190 CTTTCGCAAGAATCAAGACCAATCTTGCTTACTTCCGTA-TGAACTACGCAGTCGTTGTC 248
Query 502 TTGAACGTCATATTCTTCAGCTTGATTTGGCATCCGACCTCGCTCATCGTCTTT-ACCGG 560
|||| ||| || |||||||||||||| ||||||||||| ||||||||||| ||| ||| |
Sbjct 249 TTGATCGTTATCTTCTTCAGCTTGATCTGGCATCCGACATCGCTCATCGT-TTTCACC-G 306
Query 561 T-TTGGTTTTC-CTATGGATCTTCCTTTATTTTCTCCGTGATGTGCCTCTCAAGGTGTTC 618
| |||| | | | |||||||| ||||||||||||||||||| |||| ||||| |||||
Sbjct 307 TCTTGG-TCGCTGTTTGGATCTTTCTTTATTTTCTCCGTGATGAGCCTATCAAGCTGTTC 365
Query 619 AGGTTTCAAATCGACGATCGTG-CGGTCTTGATTGGTCTATCGGTGATT-ACCATCGTTC 676
| | ||| ||||| ||||| | |||||||||||| | |||||||| || ||| ||||||
Sbjct 366 CGATATCAGATCGATGATCG-GACGGTCTTGATTGTTTTATCGGTG-TTAACCGTCGTTC 423
Query 677 TACTTCTATTGACCAACGCGACGTTTAATATTGTTGCG-GCG-TTGATGGCCGGAGCTGT 734
||||| | |||||||||||||||||||||||||||| | ||| ||| || ||||||||||
Sbjct 424 TACTTTTGTTGACCAACGCGACGTTTAATATTGTTG-GAGCGCTTG-TGACCGGAGCTGT 481
Query 735 GTTGGTTCTGATCCATGCGGTGATTAGGAAGACGGATGATCtttttttGGATGAAGAAGC 794
||||||| |||| ||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 482 GTTGGTTTTGATACATGCGGTGGTTAGGAAGACGGAGGATCTTTTCTTGGATGAAGAAGC 541
Query 795 GGCGACGACTGAGACTTCAGGACTGACGTCACACCCTTCGTCTTAAAACGATTGATCTC 853
|||||||||||||||||| || ||||||||| |||| ||| |||||| ||||||||||
Sbjct 542 GGCGACGACTGAGACTTCTGGGCTGACGTCATACCCGTCGACTTAAATGGATTGATCTC 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86388675660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5