BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13720.1
Length=938
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929127 jgi|Araly1|929127|scaffold_301584.1 966 0.0
Ahg478769 jgi|Araly1|478769|fgenesh2_kg.3__1470__AT3G13710.1 604 3e-172
> Ahg929127 jgi|Araly1|929127|scaffold_301584.1
Length=607
Score = 966 bits (523), Expect = 0.0
Identities = 579/607 (95%), Gaps = 0/607 (0%)
Strand=Plus/Plus
Query 169 ACCATAACCCGATATTACTAATGACGAACTACGGTGCGATTCCGACGTCGTCTCATGCAT 228
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACCATAACGCGATATTACTAATGACGAACTACGGTGCGATTCCGACGTCGTCTCATGCAT 60
Query 229 CTCCGTTGGTGGATGTCGAGTCTCTCTCACGCGCTAAACACCGTATCAAAGCCGGGCTAG 288
||||| |||||||| | ||||| ||||||||||| || ||||||||||||||||| ||||
Sbjct 61 CTCCGGTGGTGGATCTTGAGTCCCTCTCACGCGCCAAGCACCGTATCAAAGCCGGACTAG 120
Query 289 CCACGCGCCGTGCTTGGAGAGTGATGTTCGATTTCCACTCCATGGGACTGCCTCACGGTG 348
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 121 CCACGCGCCGTCCTTGGAGAGTGATGTTCGATTTCCACTCCATGGGACTACCTCACGGCG 180
Query 349 TCTCCGATGCGTTCACAAGAATCAAGACCAATCTTGCTTACTTCCGTATGAACTACGCAA 408
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTCCGATGCTTTCGCAAGAATCAAGACCAATCTTGCTTACTTCCGTATGAACTACGCAG 240
Query 409 TCGTTGTCTTGATCGTTATCTTCTTCAGCTTGATCTGGCATCCGACATCGCTCATCGTCT 468
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 TCGTTGTCTTGATCGTTATCTTCTTCAGCTTGATCTGGCATCCGACATCGCTCATCGTTT 300
Query 469 TCACCGTCTTGGTCGTTGTTTGGATCTTTCTGTATTTTCTCCGTGATGAGCCTATCAAGC 528
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 TCACCGTCTTGGTCGCTGTTTGGATCTTTCTTTATTTTCTCCGTGATGAGCCTATCAAGC 360
Query 529 TGTTCCGGTTTCAGATCGATGATCGGACGGTCTTGATTGTTTTATCGGTGTTAACCGTCG 588
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGTTCCGATATCAGATCGATGATCGGACGGTCTTGATTGTTTTATCGGTGTTAACCGTCG 420
Query 589 TTTTACTCCTGTTGACCAACGCGACGTTTAATATTGTTGGAGCGCTTGTGACCGGAGCTG 648
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCTACTTTTGTTGACCAACGCGACGTTTAATATTGTTGGAGCGCTTGTGACCGGAGCTG 480
Query 649 TGTTGGTTTTGATCCATTCGGTGGTTAGGAAGACGGAGGATCTTTTCTTGGATGAAGAAG 708
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGTTGGTTTTGATACATGCGGTGGTTAGGAAGACGGAGGATCTTTTCTTGGATGAAGAAG 540
Query 709 CGGCGACGACTGAGACTTCTGGGCTGACGTCATACCCGTCGACTTAAATCGTTTCATCTC 768
||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 541 CGGCGACGACTGAGACTTCTGGGCTGACGTCATACCCGTCGACTTAAATGGATTGATCTC 600
Query 769 GAAATTT 775
||| |||
Sbjct 601 GAACTTT 607
> Ahg478769 jgi|Araly1|478769|fgenesh2_kg.3__1470__AT3G13710.1
Length=2131
Score = 604 bits (327), Expect = 3e-172
Identities = 535/632 (85%), Gaps = 28/632 (4%)
Strand=Plus/Plus
Query 187 TAATGACGAACTACGGTGCGATTCCGACGTCGTCTCATGCATCTCCGTTGGTGGATGTCG 246
||||||||||| || ||||||||||||||| | |||||||| ||| || ||
Sbjct 199 TAATGACGAACAACAACGCGATTCCGACGTCG-----T-CATCTCCGGCAGTGAATCACG 252
Query 247 AGTCTCTCTCACGCGCTAAACACCGTATCAAAGCCGGGCTAGCCACGCGCCGTGCTTGGA 306
||||| |||||||||| || || | |||||||| ||| |||||||||||||| | ||||
Sbjct 253 AGTCTATCTCACGCGCCAAGCAACATATCAAAGACGGACTAGCCACGCGCCGCCCCTGGA 312
Query 307 GAGTGATGTTCGATTTCCACTCCATGGGACTGCCTCACGGTGTCTCCGATGCGTTCACAA 366
||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 313 GAGTGATGTTCGATTTCCACTCCATGGGACTACCTCACGGCGTCTCCGATGCTTTCACAA 372
Query 367 GAATCAAGACCAATCTTGCTTACTTCCGTATG-AACTACGCAATCGTTGTCTTGATCGTT 425
||| |||||| ||||||||||||||||| | | || ||||||||||| ||||||| |||
Sbjct 373 GAACCAAGACGAATCTTGCTTACTTCCGGA-GTAATTACGCAATCGTAGTCTTGAACGTC 431
Query 426 ATCTTCTTCAGCTTGATCTGGCATCCGACATCGCTCATCGTCTTCACCGTCTTGGTCGTT 485
||||||||||||||||| ||||||||||||||||||||||||||| | | |||||| ||
Sbjct 432 ATCTTCTTCAGCTTGATTTGGCATCCGACATCGCTCATCGTCTTCGCAGGCTTGGT-TTT 490
Query 486 -GTTTGGATCTTTCTGTATTTTCTCCGTGATGAGCCTATC-AAGCTGTTCCGGTTTCAGA 543
| |||||||| || || || |||||||| |||||| || ||| ||||||| |||||||
Sbjct 491 CCTATGGATCTTCCTTTACTTCCTCCGTGACGAGCCTCTCAAAG-TGTTCCGATTTCAGA 549
Query 544 TCGATGATCG-GACGGTCTTGATTGTTTTATCGGTGT-TAACCGTCGTT-TTACTCCTGT 600
|||| ||||| | ||||| |||||| ||||||||| | ||||| ||||| || |||||||
Sbjct 550 TCGACGATCGTG-CGGTCCTGATTGGTTTATCGGT-TATAACCATCGTTCTT-CTCCTGT 606
Query 601 TGACCAACGCGACGTTTAATATTGTTG-GAGCGCTT-GTGACCGGAGCTGTGTTGGTTTT 658
||||||||||||||||||||||||||| | ||| || ||| ||||||||||||||||| |
Sbjct 607 TGACCAACGCGACGTTTAATATTGTTGCG-GCG-TTGGTGGCCGGAGCTGTGTTGGTTCT 664
Query 659 GATCCATTCGGTGGTTAGGAAGACGGAGGATCTTTTCTTGGATGAAGAAGCGGCGACGAC 718
||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 665 GATCCATGCGGTGGTTAGGAAGACGGAGGATCTTTTCTTGGATGAAGAGGCAGCGACGAC 724
Query 719 TGAGACTTCTGGGCTGACGTCATACCCGTCGACTTAAATCGTTTC-ATCTCGAAATTTGT 777
||| || || || ||||||||| |||| ||| |||||| | | | |||||||| ||| |
Sbjct 725 TGAAACGTCAGGACTGACGTCACACCCTTCGTCTTAAAACAAT-CGATCTCGAATTTTAT 783
Query 778 GTATCTTTTCTA-TTTTTGTATATTATCTTGt 808
|||| || | | |||||| ||| |||||||
Sbjct 784 GTATATTATATTGTTTTTG-ATA--ATCTTGT 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34806223221
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5