BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13730.1 Length=1914 Score E Sequences producing significant alignments: (Bits) Value Ahg918600 jgi|Araly1|918600|Al_scaffold_0180_2 2185 0.0 Ahg318152 jgi|Araly1|318152|fgenesh1_pm.C_scaffold_3001168 1978 0.0 > Ahg918600 jgi|Araly1|918600|Al_scaffold_0180_2 Length=1410 Score = 2185 bits (1183), Expect = 0.0 Identities = 1338/1413 (95%), Gaps = 10/1413 (1%) Strand=Plus/Plus Query 153 GATCAACGGTCTCAGATCATCCCCAGCTTCAAAGAAAAAACTTAATGA-TCATCATGTTA 211 |||||||| |||||||||||||||||| | | || || |||||| || | |||| |||| Sbjct 3 GATCAACGTTCTCAGATCATCCCCAGC-T--ACGATAATACTTAAAGAGT-ATCAGGTTA 58 Query 212 CATCCCAGAGTCACGGACCAAAG-TTTCCACACGGAAGCTTGGGATGGCCCGTCATCGGT 270 || || | || |||||| ||| |||||||| ||||||||||||||||| ||||||||| Sbjct 59 TTTCTCACATTCCCGGACC-AAGTTTTCCACAAGGAAGCTTGGGATGGCCTGTCATCGGT 117 Query 271 GAAACCATCGAGTTCGTCTCTTCTGCTTACTCAGACCGTCCTGAGAGTTTCATGGACAAG 330 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 118 GAAACCATCGAGTTCGTCTCTTCTGCTTACTCAGACCATCCTGAGAGTTTCATGGACAAG 177 Query 331 CGTCGTCTCATGTATGGGAGAGTGTTTAAGTCGCATATTTTTGGAACGGCGACGATCGTG 390 || || |||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 178 CGACGAGTCATGTATGGGAGAGTCTTTAAGTCGCATATATTTGGAACGGCGACGATCGTA 237 Query 391 TCGACGGATGCTGAAGTGAACAGAGCCGTTTTACAGAGCGACTCGACAGCTTTCGTGCCG 450 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 238 TCGACGGATGCTGAAGTGAACAGAGCCGTTTTACAGAGCGACTCGACGGCTTTCGTGCCG 297 Query 451 TTTTACCCAAAAACGGTAAGGGAGCTAATGGGAAAATCGTCGATACTTCTTATCAACGGG 510 |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 298 TTTTACCCGAAAACGGTGAGGGAGCTAATGGGAAAATCGTCGATACTTCTGATCAACGGG 357 Query 511 AGTTTACATAGACGGTTCCATGGATTAGTCGGTTCTTTCTTAAAGTCGCCACTTCTCAAA 570 |||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 358 AGTTTACATAGAAGGTTCCATGGACTAGTCGGTTCTTTCTTAAAGTCACCACTTCTCAAA 417 Query 571 GCTCAAATCGTTAGAGACATGCACAAGTTTTTGTCGGAATCCATGGATCTATGGTCCGAG 630 ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 418 GCTCAAATCGTTAGAGACATGCACAGGTTTTTGTCTGAATCCATGGATCTATGGTCCGAG 477 Query 631 GACCAACCTGTGCTCCTCCAAGACGTCTCCAAGACTGTTGCATTCAAAGTACTTGCCAAG 690 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 GACCAACCAGTTCTCCTCCAAGACGTCTCCAAGACTGTTGCATTCAAAGTACTTGCCAAG 537 Query 691 GCATTGATAAGTGTAGAGAAAGGAGAAGATTTAGAAGAGCTAAAGAGAGAGTTTGAAAAT 750 ||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||| Sbjct 538 GCATTGATAAGTGTAGAGAAAGGAGAAGAGTTAGAAGAGTTAAAGAAAGAGTTTGAAAAT 597 Query 751 TTCATATCAGGACTCATGTCATTACCAATTAACTTCCCTGGAACGCAACTCCATAGATCT 810 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 598 TTCATATCAGGACTCATGTCATTACCAATTAACTTCCCTGGAACCCAACTTCATAGATCT 657 Query 811 CTCCAAGCTAAGAAGAATATGGTGAAGCAAGTTGAAAGAATCATAGAAGGCAAAATTAGG 870 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 CTCCAAGCTAAGAAGAATATGGTGAAGCAAGTTGAAAGAATCATAGAAGGCAAAATTAGG 717 Query 871 AAAACAAAGAACAAGGAGGAAGAT-G-A-TGTTATTGCAAAGGATGTTGTGGATGTGTTG 927 | |||||||||| || |||||| | | ||| ||||| ||||||||||||||||||||| Sbjct 718 AGTGCAAAGAACAAAGAAGAAGATGGTACTGTGATTGCTAAGGATGTTGTGGATGTGTTG 777 Query 928 CTTAAGGACTCAAGTGAACATTTAACTCACAATTTGATTGCTAACAATATGATCGACATG 987 |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 778 CTTAAGGACTCAAGTGAATATTTAACTCACAATTTGATTGCTAACAATATGATTGACATG 837 Query 988 ATGATCCCTGGCCACGATTCTGTCCCTGTCCTCATTACCCTTGCCGTCAAATTCCTCTCT 1047 |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 838 ATGATCCCTGGCCACGATTCTGTCCCCGTCCTCATCACCCTCGCCGTCAAATTCCTCTCT 897 Query 1048 GATTCTCCTGCTGCCCTCAATCTCCTAACGGAAGAAAACATGAAGCTGAAAAGTTTGAAG 1107 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 GATTCTCCCGCTGCCCTCAATCTCCTAACGGAAGAAAACATGAAGCTGAAAAGTTTGAAG 957 Query 1108 GAATTGACAGGAGAGCCACTATATTGGAATGACTACTTGTCGTTACCTTTTACACAAAAG 1167 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 958 GAATTGACAGGAGAGCCACTATATTGGAATGACTATTTGTCGTTACCTTTTACACAAAAG 1017 Query 1168 GTGATTACAGAGACACTGAGAATGGGAAATGTTATAATTGGAGTGATGAGAAAGGCGATG 1227 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1018 GTCATTACAGAGACACTGAGAATGGGAAATGTTATAATTGGAGTGATGAGAAAGGCGATG 1077 Query 1228 AAAGATGTTGAAATAAAAGGATATGTGATACCAAAAGGATGGTGTTTCTTGGCCTATCTC 1287 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1078 AAAGATGTTGAAATAAAAGGATATGTGATACCAAAAGGATGGTGCTTCTTGGCCTATCTC 1137 Query 1288 AGATCAGTTCATCTTGATAAGCTTTATTATGAGTCTCCCTACAAATTTAATCCCTGGAGA 1347 |||||||| ||||||||||| ||||| || || ||||||||||||||||||||||||||| Sbjct 1138 AGATCAGTCCATCTTGATAAACTTTACTACGACTCTCCCTACAAATTTAATCCCTGGAGA 1197 Query 1348 TGGCAAGAAAGGGACATGAACACGAGTAGTTTCAGTCCTTTTGGAGGTGGTCAGAGATTG 1407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 TGGCAAGAAAGGGACATGAACACGAGTAGTTTCAGTCCTTTTGGAGGTGGTCAGAGATTG 1257 Query 1408 TGCCCTGGTCTCGATTTGGCTCGTCTTGAAACTTCAGTTTTTCTTCACCATCTTGTCACT 1467 |||||||||||||||||||||||||||||| ||||| | ||||||||||| ||||||||| Sbjct 1258 TGCCCTGGTCTCGATTTGGCTCGTCTTGAAGCTTCAATCTTTCTTCACCACCTTGTCACT 1317 Query 1468 CGCTTCAGATGGATAGCAGAAGAAGACACAATCATAAACTTCCCAACGGTGCATATGAAG 1527 |||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| Sbjct 1318 CGCTTCAGATGGATAGCAGAAGAAGATACAATCATAAATTTTCCAACGGTGCATATGAAG 1377 Query 1528 AACAAATTACCCATTTGGATCAAAAGAATATAA 1560 ||||||||||||||||||||||||||||||||| Sbjct 1378 AACAAATTACCCATTTGGATCAAAAGAATATAA 1410 > Ahg318152 jgi|Araly1|318152|fgenesh1_pm.C_scaffold_3001168 Length=1395 Score = 1978 bits (1071), Expect = 0.0 Identities = 1175/1226 (96%), Gaps = 3/1226 (0%) Strand=Plus/Plus Query 338 TCATGTATGGGAGAGTGTTTAAGTCGCATATTTTTGGAACGGCGACGATCGTGTCGACGG 397 |||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| Sbjct 170 TCATGTATGGGAGAGTCTTTAAGTCGCATATATTTGGAACGGCGACGATCGTATCGACGG 229 Query 398 ATGCTGAAGTGAACAGAGCCGTTTTACAGAGCGACTCGACAGCTTTCGTGCCGTTTTACC 457 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 230 ATGCTGAAGTGAACAGAGCCGTTTTACAGAGCGACTCGACGGCTTTCGTGCCGTTTTACC 289 Query 458 CAAAAACGGTAAGGGAGCTAATGGGAAAATCGTCGATACTTCTTATCAACGGGAGTTTAC 517 | |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 290 CGAAAACGGTGAGGGAGCTAATGGGAAAATCGTCGATACTTCTGATCAACGGGAGTTTAC 349 Query 518 ATAGACGGTTCCATGGATTAGTCGGTTCTTTCTTAAAGTCGCCACTTCTCAAAGCTCAAA 577 ||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct 350 ATAGAAGGTTCCATGGACTAGTCGGTTCTTTCTTAAAGTCACCACTTCTCAAAGCTCAAA 409 Query 578 TCGTTAGAGACATGCACAAGTTTTTGTCGGAATCCATGGATCTATGGTCCGAGGACCAAC 637 |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 410 TCGTTAGAGACATGCACAGGTTTTTGTCTGAATCCATGGATCTATGGTCCGAGGACCAAC 469 Query 638 CTGTGCTCCTCCAAGACGTCTCCAAGACTGTTGCATTCAAAGTACTTGCCAAGGCATTGA 697 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 470 CAGTTCTCCTCCAAGACGTCTCCAAGACTGTTGCATTCAAAGTACTTGCCAAGGCATTGA 529 Query 698 TAAGTGTAGAGAAAGGAGAAGATTTAGAAGAGCTAAAGAGAGAGTTTGAAAATTTCATAT 757 |||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| Sbjct 530 TAAGTGTAGAGAAAGGAGAAGAGTTAGAAGAGTTAAAGAAAGAGTTTGAAAATTTCATAT 589 Query 758 CAGGACTCATGTCATTACCAATTAACTTCCCTGGAACGCAACTCCATAGATCTCTCCAAG 817 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 590 CAGGACTCATGTCATTACCAATTAACTTCCCTGGAACCCAACTTCATAGATCTCTCCAAG 649 Query 818 CTAAGAAGAATATGGTGAAGCAAGTTGAAAGAATCATAGAAGGCAAAATTAGGAAAACAA 877 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 650 CTAAGAAGAATATGGTGAAGCAAGTTGAAAGAATCATAGAAGGCAAAATTAGGAGTGCAA 709 Query 878 AGAACAAGGAGGAAGAT-G-A-TGTTATTGCAAAGGATGTTGTGGATGTGTTGCTTAAGG 934 ||||||| || |||||| | | ||| ||||| |||||||||||||||||||||||||||| Sbjct 710 AGAACAAAGAAGAAGATGGTACTGTGATTGCTAAGGATGTTGTGGATGTGTTGCTTAAGG 769 Query 935 ACTCAAGTGAACATTTAACTCACAATTTGATTGCTAACAATATGATCGACATGATGATCC 994 ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 770 ACTCAAGTGAATATTTAACTCACAATTTGATTGCTAACAATATGATTGACATGATGATCC 829 Query 995 CTGGCCACGATTCTGTCCCTGTCCTCATTACCCTTGCCGTCAAATTCCTCTCTGATTCTC 1054 ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| Sbjct 830 CTGGCCACGATTCTGTCCCCGTCCTCATCACCCTCGCCGTCAAATTCCTCTCTGATTCTC 889 Query 1055 CTGCTGCCCTCAATCTCCTAACGGAAGAAAACATGAAGCTGAAAAGTTTGAAGGAATTGA 1114 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 890 CCGCTGCCCTCAATCTCCTAACGGAAGAAAACATGAAGCTGAAAAGTTTGAAGGAATTGA 949 Query 1115 CAGGAGAGCCACTATATTGGAATGACTACTTGTCGTTACCTTTTACACAAAAGGTGATTA 1174 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 950 CAGGAGAGCCACTATATTGGAATGACTATTTGTCGTTACCTTTTACACAAAAGGTCATTA 1009 Query 1175 CAGAGACACTGAGAATGGGAAATGTTATAATTGGAGTGATGAGAAAGGCGATGAAAGATG 1234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1010 CAGAGACACTGAGAATGGGAAATGTTATAATTGGAGTGATGAGAAAGGCGATGAAAGATG 1069 Query 1235 TTGAAATAAAAGGATATGTGATACCAAAAGGATGGTGTTTCTTGGCCTATCTCAGATCAG 1294 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 1070 TTGAAATAAAAGGATATGTGATACCAAAAGGATGGTGCTTCTTGGCCTATTTCAGATCAG 1129 Query 1295 TTCATCTTGATAAGCTTTATTATGAGTCTCCCTACAAATTTAATCCCTGGAGATGGCAAG 1354 | ||||||||||| ||||| || || |||||||||||||||||||||||||||||||||| Sbjct 1130 TCCATCTTGATAAACTTTACTACGACTCTCCCTACAAATTTAATCCCTGGAGATGGCAAG 1189 Query 1355 AAAGGGACATGAACACGAGTAGTTTCAGTCCTTTTGGAGGTGGTCAGAGATTGTGCCCTG 1414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1190 AAAGGGACATGAACACGAGTAGTTTCAGTCCTTTTGGAGGTGGTCAGAGATTGTGCCCTG 1249 Query 1415 GTCTCGATTTGGCTCGTCTTGAAACTTCAGTTTTTCTTCACCATCTTGTCACTCGCTTCA 1474 ||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||||||| Sbjct 1250 GTCTCGATTTGGCTCGTCTTGAAGCTTCAATCTTTCTTCACCACCTTGTCACTCGCTTCA 1309 Query 1475 GATGGATAGCAGAAGAAGACACAATCATAAACTTCCCAACGGTGCATATGAAGAACAAAT 1534 ||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| Sbjct 1310 GATGGATAGCAGAAGAAGATACAATCATAAATTTTCCAACGGTGCATATGAAGAACAAAT 1369 Query 1535 TACCCATTTGGATCAAAAGAATATAA 1560 |||||||||||||||||||||||||| Sbjct 1370 TACCCATTTGGATCAAAAGAATATAA 1395 Score = 211 bits (114), Expect = 1e-53 Identities = 138/149 (93%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 85 ATGGACActtcttcttcacttttgttcttctccttcttcttctttatcatcatcgtcatc 144 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGACACTTCTTCTTCACTTTTGCTCTTCTCCTTCTTCTTCTTTATCATCATCGTCATC 60 Query 145 ttcaACAAGATCAACGGTCTCAGATCATCCCCAGCTTCAAAGAAAAAACTTAATGATCAT 204 |||||||||||||||||||||||||||||||||||| | |||||||||||| ||| || Sbjct 61 TTCAACAAGATCAACGGTCTCAGATCATCCCCAGCTAC---GAAAAAACTTAAAGATTAT 117 Query 205 CATGTTACATCCCAGAGTCACGGACCAAA 233 ||||||| || || |||||||||||||| Sbjct 118 CATGTTATTTCTCACAGTCACGGACCAAA 146 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71914382560 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5