BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13730.1
Length=1914
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918600 jgi|Araly1|918600|Al_scaffold_0180_2 2185 0.0
Ahg318152 jgi|Araly1|318152|fgenesh1_pm.C_scaffold_3001168 1978 0.0
> Ahg918600 jgi|Araly1|918600|Al_scaffold_0180_2
Length=1410
Score = 2185 bits (1183), Expect = 0.0
Identities = 1338/1413 (95%), Gaps = 10/1413 (1%)
Strand=Plus/Plus
Query 153 GATCAACGGTCTCAGATCATCCCCAGCTTCAAAGAAAAAACTTAATGA-TCATCATGTTA 211
|||||||| |||||||||||||||||| | | || || |||||| || | |||| ||||
Sbjct 3 GATCAACGTTCTCAGATCATCCCCAGC-T--ACGATAATACTTAAAGAGT-ATCAGGTTA 58
Query 212 CATCCCAGAGTCACGGACCAAAG-TTTCCACACGGAAGCTTGGGATGGCCCGTCATCGGT 270
|| || | || |||||| ||| |||||||| ||||||||||||||||| |||||||||
Sbjct 59 TTTCTCACATTCCCGGACC-AAGTTTTCCACAAGGAAGCTTGGGATGGCCTGTCATCGGT 117
Query 271 GAAACCATCGAGTTCGTCTCTTCTGCTTACTCAGACCGTCCTGAGAGTTTCATGGACAAG 330
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 118 GAAACCATCGAGTTCGTCTCTTCTGCTTACTCAGACCATCCTGAGAGTTTCATGGACAAG 177
Query 331 CGTCGTCTCATGTATGGGAGAGTGTTTAAGTCGCATATTTTTGGAACGGCGACGATCGTG 390
|| || |||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 178 CGACGAGTCATGTATGGGAGAGTCTTTAAGTCGCATATATTTGGAACGGCGACGATCGTA 237
Query 391 TCGACGGATGCTGAAGTGAACAGAGCCGTTTTACAGAGCGACTCGACAGCTTTCGTGCCG 450
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 238 TCGACGGATGCTGAAGTGAACAGAGCCGTTTTACAGAGCGACTCGACGGCTTTCGTGCCG 297
Query 451 TTTTACCCAAAAACGGTAAGGGAGCTAATGGGAAAATCGTCGATACTTCTTATCAACGGG 510
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 298 TTTTACCCGAAAACGGTGAGGGAGCTAATGGGAAAATCGTCGATACTTCTGATCAACGGG 357
Query 511 AGTTTACATAGACGGTTCCATGGATTAGTCGGTTCTTTCTTAAAGTCGCCACTTCTCAAA 570
|||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 358 AGTTTACATAGAAGGTTCCATGGACTAGTCGGTTCTTTCTTAAAGTCACCACTTCTCAAA 417
Query 571 GCTCAAATCGTTAGAGACATGCACAAGTTTTTGTCGGAATCCATGGATCTATGGTCCGAG 630
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 418 GCTCAAATCGTTAGAGACATGCACAGGTTTTTGTCTGAATCCATGGATCTATGGTCCGAG 477
Query 631 GACCAACCTGTGCTCCTCCAAGACGTCTCCAAGACTGTTGCATTCAAAGTACTTGCCAAG 690
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GACCAACCAGTTCTCCTCCAAGACGTCTCCAAGACTGTTGCATTCAAAGTACTTGCCAAG 537
Query 691 GCATTGATAAGTGTAGAGAAAGGAGAAGATTTAGAAGAGCTAAAGAGAGAGTTTGAAAAT 750
||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||
Sbjct 538 GCATTGATAAGTGTAGAGAAAGGAGAAGAGTTAGAAGAGTTAAAGAAAGAGTTTGAAAAT 597
Query 751 TTCATATCAGGACTCATGTCATTACCAATTAACTTCCCTGGAACGCAACTCCATAGATCT 810
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 598 TTCATATCAGGACTCATGTCATTACCAATTAACTTCCCTGGAACCCAACTTCATAGATCT 657
Query 811 CTCCAAGCTAAGAAGAATATGGTGAAGCAAGTTGAAAGAATCATAGAAGGCAAAATTAGG 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CTCCAAGCTAAGAAGAATATGGTGAAGCAAGTTGAAAGAATCATAGAAGGCAAAATTAGG 717
Query 871 AAAACAAAGAACAAGGAGGAAGAT-G-A-TGTTATTGCAAAGGATGTTGTGGATGTGTTG 927
| |||||||||| || |||||| | | ||| ||||| |||||||||||||||||||||
Sbjct 718 AGTGCAAAGAACAAAGAAGAAGATGGTACTGTGATTGCTAAGGATGTTGTGGATGTGTTG 777
Query 928 CTTAAGGACTCAAGTGAACATTTAACTCACAATTTGATTGCTAACAATATGATCGACATG 987
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 778 CTTAAGGACTCAAGTGAATATTTAACTCACAATTTGATTGCTAACAATATGATTGACATG 837
Query 988 ATGATCCCTGGCCACGATTCTGTCCCTGTCCTCATTACCCTTGCCGTCAAATTCCTCTCT 1047
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 838 ATGATCCCTGGCCACGATTCTGTCCCCGTCCTCATCACCCTCGCCGTCAAATTCCTCTCT 897
Query 1048 GATTCTCCTGCTGCCCTCAATCTCCTAACGGAAGAAAACATGAAGCTGAAAAGTTTGAAG 1107
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GATTCTCCCGCTGCCCTCAATCTCCTAACGGAAGAAAACATGAAGCTGAAAAGTTTGAAG 957
Query 1108 GAATTGACAGGAGAGCCACTATATTGGAATGACTACTTGTCGTTACCTTTTACACAAAAG 1167
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 958 GAATTGACAGGAGAGCCACTATATTGGAATGACTATTTGTCGTTACCTTTTACACAAAAG 1017
Query 1168 GTGATTACAGAGACACTGAGAATGGGAAATGTTATAATTGGAGTGATGAGAAAGGCGATG 1227
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GTCATTACAGAGACACTGAGAATGGGAAATGTTATAATTGGAGTGATGAGAAAGGCGATG 1077
Query 1228 AAAGATGTTGAAATAAAAGGATATGTGATACCAAAAGGATGGTGTTTCTTGGCCTATCTC 1287
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1078 AAAGATGTTGAAATAAAAGGATATGTGATACCAAAAGGATGGTGCTTCTTGGCCTATCTC 1137
Query 1288 AGATCAGTTCATCTTGATAAGCTTTATTATGAGTCTCCCTACAAATTTAATCCCTGGAGA 1347
|||||||| ||||||||||| ||||| || || |||||||||||||||||||||||||||
Sbjct 1138 AGATCAGTCCATCTTGATAAACTTTACTACGACTCTCCCTACAAATTTAATCCCTGGAGA 1197
Query 1348 TGGCAAGAAAGGGACATGAACACGAGTAGTTTCAGTCCTTTTGGAGGTGGTCAGAGATTG 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TGGCAAGAAAGGGACATGAACACGAGTAGTTTCAGTCCTTTTGGAGGTGGTCAGAGATTG 1257
Query 1408 TGCCCTGGTCTCGATTTGGCTCGTCTTGAAACTTCAGTTTTTCTTCACCATCTTGTCACT 1467
|||||||||||||||||||||||||||||| ||||| | ||||||||||| |||||||||
Sbjct 1258 TGCCCTGGTCTCGATTTGGCTCGTCTTGAAGCTTCAATCTTTCTTCACCACCTTGTCACT 1317
Query 1468 CGCTTCAGATGGATAGCAGAAGAAGACACAATCATAAACTTCCCAACGGTGCATATGAAG 1527
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 1318 CGCTTCAGATGGATAGCAGAAGAAGATACAATCATAAATTTTCCAACGGTGCATATGAAG 1377
Query 1528 AACAAATTACCCATTTGGATCAAAAGAATATAA 1560
|||||||||||||||||||||||||||||||||
Sbjct 1378 AACAAATTACCCATTTGGATCAAAAGAATATAA 1410
> Ahg318152 jgi|Araly1|318152|fgenesh1_pm.C_scaffold_3001168
Length=1395
Score = 1978 bits (1071), Expect = 0.0
Identities = 1175/1226 (96%), Gaps = 3/1226 (0%)
Strand=Plus/Plus
Query 338 TCATGTATGGGAGAGTGTTTAAGTCGCATATTTTTGGAACGGCGACGATCGTGTCGACGG 397
|||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 170 TCATGTATGGGAGAGTCTTTAAGTCGCATATATTTGGAACGGCGACGATCGTATCGACGG 229
Query 398 ATGCTGAAGTGAACAGAGCCGTTTTACAGAGCGACTCGACAGCTTTCGTGCCGTTTTACC 457
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 230 ATGCTGAAGTGAACAGAGCCGTTTTACAGAGCGACTCGACGGCTTTCGTGCCGTTTTACC 289
Query 458 CAAAAACGGTAAGGGAGCTAATGGGAAAATCGTCGATACTTCTTATCAACGGGAGTTTAC 517
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 290 CGAAAACGGTGAGGGAGCTAATGGGAAAATCGTCGATACTTCTGATCAACGGGAGTTTAC 349
Query 518 ATAGACGGTTCCATGGATTAGTCGGTTCTTTCTTAAAGTCGCCACTTCTCAAAGCTCAAA 577
||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 350 ATAGAAGGTTCCATGGACTAGTCGGTTCTTTCTTAAAGTCACCACTTCTCAAAGCTCAAA 409
Query 578 TCGTTAGAGACATGCACAAGTTTTTGTCGGAATCCATGGATCTATGGTCCGAGGACCAAC 637
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 410 TCGTTAGAGACATGCACAGGTTTTTGTCTGAATCCATGGATCTATGGTCCGAGGACCAAC 469
Query 638 CTGTGCTCCTCCAAGACGTCTCCAAGACTGTTGCATTCAAAGTACTTGCCAAGGCATTGA 697
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 CAGTTCTCCTCCAAGACGTCTCCAAGACTGTTGCATTCAAAGTACTTGCCAAGGCATTGA 529
Query 698 TAAGTGTAGAGAAAGGAGAAGATTTAGAAGAGCTAAAGAGAGAGTTTGAAAATTTCATAT 757
|||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||
Sbjct 530 TAAGTGTAGAGAAAGGAGAAGAGTTAGAAGAGTTAAAGAAAGAGTTTGAAAATTTCATAT 589
Query 758 CAGGACTCATGTCATTACCAATTAACTTCCCTGGAACGCAACTCCATAGATCTCTCCAAG 817
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 590 CAGGACTCATGTCATTACCAATTAACTTCCCTGGAACCCAACTTCATAGATCTCTCCAAG 649
Query 818 CTAAGAAGAATATGGTGAAGCAAGTTGAAAGAATCATAGAAGGCAAAATTAGGAAAACAA 877
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 650 CTAAGAAGAATATGGTGAAGCAAGTTGAAAGAATCATAGAAGGCAAAATTAGGAGTGCAA 709
Query 878 AGAACAAGGAGGAAGAT-G-A-TGTTATTGCAAAGGATGTTGTGGATGTGTTGCTTAAGG 934
||||||| || |||||| | | ||| ||||| ||||||||||||||||||||||||||||
Sbjct 710 AGAACAAAGAAGAAGATGGTACTGTGATTGCTAAGGATGTTGTGGATGTGTTGCTTAAGG 769
Query 935 ACTCAAGTGAACATTTAACTCACAATTTGATTGCTAACAATATGATCGACATGATGATCC 994
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 770 ACTCAAGTGAATATTTAACTCACAATTTGATTGCTAACAATATGATTGACATGATGATCC 829
Query 995 CTGGCCACGATTCTGTCCCTGTCCTCATTACCCTTGCCGTCAAATTCCTCTCTGATTCTC 1054
||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 830 CTGGCCACGATTCTGTCCCCGTCCTCATCACCCTCGCCGTCAAATTCCTCTCTGATTCTC 889
Query 1055 CTGCTGCCCTCAATCTCCTAACGGAAGAAAACATGAAGCTGAAAAGTTTGAAGGAATTGA 1114
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 CCGCTGCCCTCAATCTCCTAACGGAAGAAAACATGAAGCTGAAAAGTTTGAAGGAATTGA 949
Query 1115 CAGGAGAGCCACTATATTGGAATGACTACTTGTCGTTACCTTTTACACAAAAGGTGATTA 1174
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 950 CAGGAGAGCCACTATATTGGAATGACTATTTGTCGTTACCTTTTACACAAAAGGTCATTA 1009
Query 1175 CAGAGACACTGAGAATGGGAAATGTTATAATTGGAGTGATGAGAAAGGCGATGAAAGATG 1234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 CAGAGACACTGAGAATGGGAAATGTTATAATTGGAGTGATGAGAAAGGCGATGAAAGATG 1069
Query 1235 TTGAAATAAAAGGATATGTGATACCAAAAGGATGGTGTTTCTTGGCCTATCTCAGATCAG 1294
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1070 TTGAAATAAAAGGATATGTGATACCAAAAGGATGGTGCTTCTTGGCCTATTTCAGATCAG 1129
Query 1295 TTCATCTTGATAAGCTTTATTATGAGTCTCCCTACAAATTTAATCCCTGGAGATGGCAAG 1354
| ||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 1130 TCCATCTTGATAAACTTTACTACGACTCTCCCTACAAATTTAATCCCTGGAGATGGCAAG 1189
Query 1355 AAAGGGACATGAACACGAGTAGTTTCAGTCCTTTTGGAGGTGGTCAGAGATTGTGCCCTG 1414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 AAAGGGACATGAACACGAGTAGTTTCAGTCCTTTTGGAGGTGGTCAGAGATTGTGCCCTG 1249
Query 1415 GTCTCGATTTGGCTCGTCTTGAAACTTCAGTTTTTCTTCACCATCTTGTCACTCGCTTCA 1474
||||||||||||||||||||||| ||||| | ||||||||||| ||||||||||||||||
Sbjct 1250 GTCTCGATTTGGCTCGTCTTGAAGCTTCAATCTTTCTTCACCACCTTGTCACTCGCTTCA 1309
Query 1475 GATGGATAGCAGAAGAAGACACAATCATAAACTTCCCAACGGTGCATATGAAGAACAAAT 1534
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 1310 GATGGATAGCAGAAGAAGATACAATCATAAATTTTCCAACGGTGCATATGAAGAACAAAT 1369
Query 1535 TACCCATTTGGATCAAAAGAATATAA 1560
||||||||||||||||||||||||||
Sbjct 1370 TACCCATTTGGATCAAAAGAATATAA 1395
Score = 211 bits (114), Expect = 1e-53
Identities = 138/149 (93%), Gaps = 3/149 (2%)
Strand=Plus/Plus
Query 85 ATGGACActtcttcttcacttttgttcttctccttcttcttctttatcatcatcgtcatc 144
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGACACTTCTTCTTCACTTTTGCTCTTCTCCTTCTTCTTCTTTATCATCATCGTCATC 60
Query 145 ttcaACAAGATCAACGGTCTCAGATCATCCCCAGCTTCAAAGAAAAAACTTAATGATCAT 204
|||||||||||||||||||||||||||||||||||| | |||||||||||| ||| ||
Sbjct 61 TTCAACAAGATCAACGGTCTCAGATCATCCCCAGCTAC---GAAAAAACTTAAAGATTAT 117
Query 205 CATGTTACATCCCAGAGTCACGGACCAAA 233
||||||| || || ||||||||||||||
Sbjct 118 CATGTTATTTCTCACAGTCACGGACCAAA 146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71914382560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5