BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13740.1
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478773 jgi|Araly1|478773|fgenesh2_kg.3__1474__AT3G13740.1 1347 0.0
Ahg333224 jgi|Araly1|333224|fgenesh1_pm.C_scaffold_180000001 736 0.0
> Ahg478773 jgi|Araly1|478773|fgenesh2_kg.3__1474__AT3G13740.1
Length=935
Score = 1347 bits (729), Expect = 0.0
Identities = 881/950 (93%), Gaps = 28/950 (3%)
Strand=Plus/Plus
Query 37 AAAAATGGTGATTTTATCGGCGAGCTCCACTGTGAGAGCTGCCTTAGATACACAACCTAG 96
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 AAAAATGGTGATTTTATCGGCGAGCTCCACCGTGAGAGCTGCCTTAGATACACAACCTAG 60
Query 97 ACTTCCCTACAACCCTAATGCGCCGCGAAAAGTTAAGAAAATCCCTAACGGTAATTCATT 156
|||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 61 ACTTCCGTACAACCCTAATGCGCCGCGAAAAGTTAAGAAAACCCCTAACAATAATTCATT 120
Query 157 CTTACCGCCGCCGTCACCTGCACCGTCTCCAGGAATCAGCATCTCCGTCGCCGATTTGCT 216
|||||| || ||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 CTTACCACCACCGTCACCTCCACCGTCTCCAGGAATCAGCATCTCCGTCGCTGATTTGCT 180
Query 217 CAAGCGTCCTTCAAGTAAAGAGA-TAACTGTTGACGTTGATGATACTTATATGGGATATG 275
||||||||| |||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct 181 CAAGCGTCCCGCAAGTAAAGA-ATTAACTGTTGACGTTGATGATACGTATATGGGATATG 239
Query 276 AGACATGGTCTCCAAGTCCACCAAAGTTGGAGAAACCAAGATCAGTCTTCAATCCTGCTT 335
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 240 AGACATGGTCTCCAAGTCCACCAAAGTTGGAGAAACCAAGATCAGTCTTCAATGCTGCTT 299
Query 336 CTTTAGCCTTTATAGGCGATTCCATTTATGAGCTATATGCTCGTAGGCATTTTCTTTTCC 395
|||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 CTTTGGCCTTCATAGGCGATTCCATTTTTGAGCTATATGCTCGTAGGCATTTTCTTTTCC 359
Query 396 CTCCGCTTAGTATTGAAGATTATAACGATCGTGTTAGAGCTGTGGTGCGCTGTGAAGCTC 455
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 360 CTCCGCTCAGTATTGAAGATTATAACGATCGTGTTAGAGCAGTGGTGCGCTGTGAAGCAC 419
Query 456 AGTATGCTTTGCTGAATAAACTTGTTGATGATGACTTTCT-AACAAAGGAAGAGAGGGAT 514
|||||||||||||||| |||||||||||||||||||| || ||||||||| |||||||||
Sbjct 420 AGTATGCTTTGCTGAAGAAACTTGTTGATGATGACTT-CTTAACAAAGGAGGAGAGGGAT 478
Query 515 ATTCTTAGGTGGGGAAAGAATCTAGGTTCTGCTAGAACACGTACAAGAAGGCGTGCAGGT 574
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 479 ATTCTTAGGTGGGGAAAGAATCTAGGTTCCGCTAGAACACGTACAAGAAGGCGTGCAGGA 538
Query 575 AATGCGGTTTATAACAAGGCATCATCATTGGAAACACTAATTGGTTATCTGTATCTGACA 634
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 539 AATGCGGTTTATAACAAGGCATCATCATTGGAGACACTAATTGGTTATCTGTATCTGACA 598
Query 635 AACGGGAAAAGATTAGAAAAAATAATGGAGAAGCTAGGATTCTCAAGTGATTCTTCAACT 694
||||||||||||||||| ||||||||| ||||||||||||||||||| || |||||||||
Sbjct 599 AACGGGAAAAGATTAGAGAAAATAATGCAGAAGCTAGGATTCTCAAGCGACTCTTCAACT 658
Query 695 GAGATCGTGATTGAAGAAACCAA-CCCTAAACCATCAGAATCATCCAACCTGC-CAAACT 752
||||||||||||||||| |||| ||| |||||||||||||| | ||||| | ||||||
Sbjct 659 GAGATCGTGATTGAAGAGGCCAAGCCC-AAACCATCAGAATC--C-AACCT-CTCAAACT 713
Query 753 TCATACTCAACGAGCAAGTGGTGTCATTTTAGTTGTAGGAAAA-GGTCTTTACTC----- 806
||||||||||||||||||||||||||| ||||||||| |||| ||||| |||||
Sbjct 714 TCATACTCAACGAGCAAGTGGTGTCATAATAGTTGTAG-AAAACGGTCTCTACTCTTATC 772
Query 807 GGATCATGGAAAAGCTGAAGAATCAAAGTTGTC-TTAA-ATGGCCGGTGTAGCAAGCATA 864
||||||||||| |||||||||||| ||||| || ||| | ||||||||||||| ||
Sbjct 773 GGATCATGGAACAGCTGAAGAATCGAAGTT-TCCTTAGGA-GGCCGGTGTAGCAT---TA 827
Query 865 ACAGTGCTCACTTAACCGGAGAAGACGTTTTTTCGTATATGTACATACGTATGTATGAAT 924
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 828 -CAGTGCTCACTTAACCGGAGAAGACGTTTTTT-GTATATGTACATACGTATGTATGAAT 885
Query 925 GTCCAACTCCTACTGGATA-TCAAATCAAAATGCCCATTTTTGTCTTCTG 973
|| ||||||||||||| | |||||||||| |||||||||||||||||||
Sbjct 886 GTGCAACTCCTACTGGTTGGTCAAATCAAAGTGCCCATTTTTGTCTTCTG 935
> Ahg333224 jgi|Araly1|333224|fgenesh1_pm.C_scaffold_180000001
Length=597
Score = 736 bits (398), Expect = 0.0
Identities = 448/472 (95%), Gaps = 4/472 (1%)
Strand=Plus/Plus
Query 41 ATGGTGATTTTATCGGCGAGCTCCACTGTGAGAGCTGCCTTAGATACACAACCTAGACTT 100
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGATTTTATCGGCGAGCTCCACCGTGAGAGCTGCCTTAGATACACAACCTAGACTT 60
Query 101 CCCTACAACCCTAATGCGCCGCGAAAAGTTAAGAAAATCCCTAACGGTAATTCATTCTTA 160
|| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 61 CCGTACAACCCTAATGCGCCGCGAAAAGTTAAGAAAACCCCTAACAATAATTCATTCTTA 120
Query 161 CCGCCGCCGTCACCTGCACCGTCTCCAGGAATCAGCATCTCCGTCGCCGATTTGCTCAAG 220
|| || ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 CCACCACCGTCACCTCCACCGTCTCCAGGAATCAGCATCTCCGTCGCTGATTTGCTCAAG 180
Query 221 CGTCCTTCAAGTAAAGAGA-TAACTGTTGACGTTGATGATACTTATATGGGATATGAGAC 279
||||| |||||||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct 181 CGTCCCGCAAGTAAAGA-ATTAACTGTTGACGTTGATGATACGTATATGGGATATGAGAC 239
Query 280 ATGGTCTCCAAGTCCACCAAAGTTGGAGAAACCAAGATCAGTCTTCAATCCTGCTTCTTT 339
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 ATGGTCTCCAAGTCCACCAAAGTTGGAGAAACCAAGATCAGTCTTCAATGCTGCTTCTTT 299
Query 340 AGCCTTTATAGGCGATTCCATTTATGAGCTATATGCTCGTAGGCATTTTCTTTTCCCTCC 399
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 300 GGCCTTCATAGGCGATTCCATTTTTGAGCTATATGCTCGTAGGCATTTTCTTTTCCCTCC 359
Query 400 GCTTAGTATTGAAGATTATAACGATCGTGTTAGAGCTGTGGTGCGCTGTGAAGCTCAGTA 459
||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 360 GCTCAGTATTGAAGATTATAACGATCGTGTTAGAGCAGTGGTGCGCTGTGAAGCACAGTA 419
Query 460 TGCTTTGCTGAATAAACTTGTTGATGATGACTTTCT-AACAAAGGAAGAGAG 510
|||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 420 TGCTTTGCTGAAGAAACTTGTTGATGATGACTT-CTTAACAAAGGAAGAGAG 470
Score = 163 bits (88), Expect = 2e-39
Identities = 116/128 (91%), Gaps = 7/128 (5%)
Strand=Plus/Plus
Query 654 AAATAATGGAGAAGCTAGGATTCTCAAGTGATTCTTCAACTGAGATCGTGATTGAAGAAA 713
|||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 473 AAATAATGCAGAAGCTAGGATTCTCAAGCGACTCTTCAACTGAGATCGTGATTGAAGAGG 532
Query 714 CCAA-CCCTAAACCATCAGAATCATCCAACCTGC-CAAACTTCATACTCAACGAGCAAGT 771
|||| ||| |||||||||||||| | ||||| | |||||||||||||||||||||||||
Sbjct 533 CCAAGCCC-AAACCATCAGAATC--C-AACCT-CTCAAACTTCATACTCAACGAGCAAGT 587
Query 772 GGTGTCAT 779
||||||||
Sbjct 588 GGTGTCAT 595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40334046186
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5