BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13772.1
Length=2106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478776 jgi|Araly1|478776|fgenesh2_kg.3__1477__AT3G13772.1 3552 0.0
Ahg474567 jgi|Araly1|474567|fgenesh2_kg.1__4521__AT1G55130.1 2156 0.0
> Ahg478776 jgi|Araly1|478776|fgenesh2_kg.3__1477__AT3G13772.1
Length=2098
Score = 3552 bits (1923), Expect = 0.0
Identities = 2047/2105 (97%), Gaps = 16/2105 (1%)
Strand=Plus/Plus
Query 1 ATGAAGAAGACGAAAGGAAGTAGCTTTCGATTCTACGCCActctcttactctcttttctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGAAGACGAAAGGAAGTAGCTTTCGATTCTACGCCACTCTCTTACTCTCTTTTCTC 60
Query 61 tctttctccttatctcGCGCCTTTTATCTACCAGGAGTCGCTCCTCGTGATTTCCAGAAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTTCTCCTTATCTCGCGCCTTTTATCTACCAGGAGTCGCTCCTCGTGATTTCCAGAAG 120
Query 121 GGTGATCCTCTTTATGTTAAAGTTAACAAATTGTCGTCCACAAAGACTCAACTTCCTTAT 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTGATCCTCTTTATGTTAAAGTGAACAAATTGTCGTCCACAAAGACTCAACTTCCTTAT 180
Query 181 GACTACTACTACCTGAATTACTGTAAGCCTCCTAAGATCTTGAACAATGCTGAGAATTTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GACTACTACTACCTGAATTACTGTAAGCCTCCTAAGATCTTGAACAATGCTGAAAATTTA 240
Query 241 GGGGAGGTTCTCAGAGGTGACCGCATTGAGAATTCCGTTTATACTTTTCAAATGCTGGAA 300
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GGGGAGGTTCTCAGAGGAGACCGCATTGAGAATTCCGTTTATACTTTTCAAATGCTTGAA 300
Query 301 GATCAGCCCTGCAAAGTAGGTTGCCGTGTTAAACTTAATGCTGACTCCACCAAGAATTTC 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 301 GATCAGCCCTGCAAAGTAGGTTGCCGTGTTAAACTTGATGCTGACTCCACCAAAAATTTC 360
Query 361 AAGGAAAAGATTGATGATGAATACAGGGCTAATATGATTCTTGATAATCTTCCAGTAGCT 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 AAGGAAAAGATTGATGATGAATACCGGGCTAATATGATTCTTGATAATCTTCCAGTAGCT 420
Query 421 GTACTAAGACAAAGGAGAGATGGAAGTCAATCAACGACTTATGAACACGGTTTTCGTGTT 480
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTCTTAGACAAAGGAGAGATGGAAGTCAATCAACGACTTATGAACACGGTTTTCGTGTT 480
Query 481 GGCTTTAAAGGGAGTTATGAAGGGAGCAAAGAGGAGAAATACTTTATACATAATCACTTG 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGCTTCAAAGGGAGTTATGAAGGGAGCAAAGAGGAGAAATACTTTATACATAATCACTTG 540
Query 541 AGCTTCCGAGTCATGTACCACAGAGACCAAGAGTCTGATTCTGCTCGAATTGTTGGATTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGCTTCCGAGTCATGTACCACAGAGACCAAGAGTCTGATTCTGCTCGAATTGTTGGATTT 600
Query 601 GAGGTTACGCCTAACAGTATCTTGCATGAATACAAGGAGTGGGATGaaaaaaaTCCTCAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAGGTTACGCCTAACAGTATCTTGCATGAATACAAGGAGTGGGATGAAAAAAATCCTCAG 660
Query 661 TTAACAACATGTAATAAGGACACGAAGAATCTAATCCAAGGCAACACTGTCCCTCAAGAA 720
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 661 TTAACAACATGTAATAAGGACACAAAAAATCTGATCCAAGGCAACACTGTCCCTCAAGAA 720
Query 721 GTTGAGCAAGGAAAAGAAATAGTGTTTACATATGATGTCTCGTTTAAGGAGAGTGAAATC 780
|||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 721 GTTGAGCAAGGAAAAGAAATAGTGTTTACATATGATGTCTCG----A--A-AGTGAAATC 773
Query 781 AAATGGGCTTCTCGGTGGGACACGTACC-TTCTCATGAACGATGATCAAATCCACTGGTT 839
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 774 AAATGGGCTTCTCGGTGGGACACGTACCTTTCTCATGAACGATGATCAAATCCACTGGTT 833
Query 840 TTCCATCATAAATTCACTTATGATTGTCCTTTTCCTTTCTGGAATGGTAGCCATGATCAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TTCCATCATAAATTCACTTATGATTGTCCTTTTCCTTTCTGGAATGGTAGCCATGATCAT 893
Query 900 GATGAGAACTTTATACAAGGATATCTCAAACTACAATCAGCTCGAGACCCAAGATGAGGC 959
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 894 GATGAGAACTCTATACAAGGATATCTCAAACTACAATCAGCTTGAGACCCAAGATGAGGC 953
Query 960 CCAGGAAGAGACTGGATGGAAGCTTGTACACGGAGATGTCTTCAGGCCACCGGTGAACTC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 CCAGGAAGAGACTGGATGGAAGCTTGTACACGGAGATGTCTTCAGGCCACCGGTGAACTC 1013
Query 1020 TGGTTTATTGTGTGTTTATGTTGGTACAGGTGTTCAGATCTTCGGAATGTCACTTGTTAC 1079
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1014 TGGATTATTGTGTGTTTATGTTGGTACAGGTGTTCAGATCTTCGGGATGTCACTGGTTAC 1073
Query 1080 AATGATGTTTGCGTTGCTTGGCTTCTTATCTCCATCCAACAGAGGAGGGCTTATGACTGC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 AATGATGTTTGCGTTGCTTGGCTTCTTATCTCCATCCAACAGAGGAGGGCTTATGACTGC 1133
Query 1140 CATGGTTCTCTTGTGGGTTTTCATGGGCATATTCGCTGGTTACTCCTCGTCTCGCCTTCA 1199
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1134 CATGGTTCTCTTGTGGGTTTTCATGGGAATATTCGCTGGTTACTCCTCGTCTCGCCTTCA 1193
Query 1200 CAAAATGTTCAAAGGAAACAAGTGGAAGAGAATGACCTTGAAGACTGCATTCATGTTTCC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 CAAAATGTTCAAAGGAAACAAGTGGAAGAGAATGACCTTGAAGACTGCATTCATGTTTCC 1253
Query 1260 CGGTATCCTTTTTGCTATCTTCTTTGTTCTGAATGCCCTTATTTGGGGAGAACAGTCATC 1319
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1254 GGGTATCCTTTTTGCTATCTTCTTTGTTCTGAATGCCCTTATTTGGGGAGAGCAGTCATC 1313
Query 1320 TGGAGCCATACCATTTGGTACAATGTTTGCTCTCTTCTGCCTCTGGTTTGGCATCTCAGT 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 TGGAGCCATACCATTTGGTACAATGTTTGCTCTCTTCTGCCTCTGGTTTGGCATCTCAGT 1373
Query 1380 CCCACTAGTCTTCGTTGGTAGCTATCTGGGTTACAAGAAGCCAGCAATTGAAGATCCAGT 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 CCCACTAGTCTTCGTTGGTAGCTATCTGGGTTACAAGAAGCCAGCAATTGAAGATCCAGT 1433
Query 1440 CAAAACAAACAAGATCCCGAGGCAAGTACCAGAGCAGCCGTGGTACATGAAACCAGTTTT 1499
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1434 CAAAACAAACAAGATCCCGAGACAAGTACCAGAGCAGCCGTGGTACATGAAACCAGTTTT 1493
Query 1500 CTCTATACTAATTGGAGGCATTCTCCCGTTTGGAGCAGTCTTCATCGAGCTCTTCTTCAT 1559
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1494 CTCCATACTAATTGGAGGCATCCTCCCGTTTGGAGCAGTCTTCATCGAGCTCTTCTTCAT 1553
Query 1560 CTTGACATCTATATGGCTGAACCAGTTCTACTACATCTTCGGGTTCCTCTTTATAGtttt 1619
| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1554 CCTGACATCAATATGGCTGAACCAGTTCTACTACATCTTCGGGTTCCTTTTTATAGTGTT 1613
Query 1620 tttGATCTTGATCGTCACCTGTGCAGAGATCACAGTGGTGCTCTGCTACTTCCAGCTTTG 1679
||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 1614 CTTGATCTTGATCGTCACCTGTGCAGAGATTACAGTGGTGCTCTGTTATTTCCAGCTTTG 1673
Query 1680 TAGCGAAGACTACAACTGGTGGTGGAGAGCTTACTTAACTGCGGGCTCATCCGCTTTCTA 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 TAGCGAAGACTACAACTGGTGGTGGAGAGCTTACTTAACTGCGGGCTCATCCGCTTTCTA 1733
Query 1740 CCTCTTCCTCTACTCAATCTTCTACTTCTTCACAAAGCTGGAGATCACAAAGCTAGTCTC 1799
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1734 CCTCTTCCTCTACTCAATCTTCTACTTCTTCACAAAGTTGGAGATCACAAAGCTAGTATC 1793
Query 1800 GGGAATGCTCTACTTCGGGTACATGATTATCATCTCTTACGCATTCTTCGTCCTAACTGG 1859
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1794 GGGAATGCTCTACTTCGGGTACATGATCATCATCTCTTACGCATTCTTCGTCCTAACTGG 1853
Query 1860 CACAATCGGTTTCTATGCTTGCTTCTGGTTCGTGAGAAAGATCTACTCCTCAGTGAAGAT 1919
||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1854 CACTATCGGTTTCTATGCTTGCTTCTGGTTTGTGAGAAAGATCTACTCCTCGGTGAAGAT 1913
Query 1920 TGACTAGAACCCAACTGATAGA-GATGCCAACTTTTG--TCTTTTAAGGTTTTGTATGTT 1976
|||||||||||||| ||||||| |||||||||||||| ||||| | |||||||||||||
Sbjct 1914 TGACTAGAACCCAAGTGATAGAAGATGCCAACTTTTGAGTCTTTGA-GGTTTTGTATGTT 1972
Query 1977 TGGGTGATTGTATGGTACGTAGCTGTAACAAAGTAAAAGAA--A--TCAACTTTAATTTG 2032
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1973 TGGGTGATTGTATGGTACGTAGCTGTAACAAAGTAAAAGAATCAAATCAACTTTAATTTG 2032
Query 2033 TACCGTTTCTCTTCAACACCTGCATATCCACAGATGTTGGCTGAATTAATATTACATGCC 2092
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 2033 TACCGTTTCTCTTCAACACCTGCATTTCCACAGATGTTGGCTGAATCAATATTACATGCC 2092
Query 2093 TTTTT 2097
|||||
Sbjct 2093 TTTTT 2097
> Ahg474567 jgi|Araly1|474567|fgenesh2_kg.1__4521__AT1G55130.1
Length=2040
Score = 2156 bits (1167), Expect = 0.0
Identities = 1667/1912 (87%), Gaps = 19/1912 (1%)
Strand=Plus/Plus
Query 26 TTCGATTCTACGCCActctcttactctcttttctctctttctcct-ta-tc-tcGCGCCT 82
||||| |||||| ||||||||||||||| ||||| | |||| || | || || || ||
Sbjct 14 TTCGAATCTACGGCACTCTCTTACTCTC-TTTCT-T-ATTCTTCTCAACTCTTCACG-CT 69
Query 83 TT-TATCTACCAGGAGTCGCTCCTCGTGATTTCCAGAAGGGTGATCCTCTTTATGTTAAA 141
|| ||||| || || ||||||||||| |||||||| |||||||||||||| ||||| |||
Sbjct 70 TTCTATCTTCCCGGTGTCGCTCCTCGGGATTTCCAAAAGGGTGATCCTCTATATGTCAAA 129
Query 142 GTTAACAAATTGTCGTCCACAAAGACTCAACTTCCTTATGACTACTACTACCTGAATTAC 201
|| |||||||| ||||| ||||||||||| ||||||||||| | ||||||||||||||||
Sbjct 130 GTGAACAAATTATCGTCTACAAAGACTCAGCTTCCTTATGATTTCTACTACCTGAATTAC 189
Query 202 TGTAAGCCTCCTAAGATCTTGAACAATGCTGAGAATTTAGGGGAGGTTCTCAGAGGTGAC 261
||||||||||| ||||||||||| | | ||| ||||| ||||||||||| ||||| ||
Sbjct 190 TGTAAGCCTCCGAAGATCTTGAATACCGGTGAAAATTTGGGGGAGGTTCTTAGAGGAGAT 249
Query 262 CGCATTGAGAATTCCGTTTATACTTTTCAAATGCTGGAAGATCAGCCCTGCAAAGTAGGT 321
|||||||||||||| |||||||||||| ||||| |||| ||||||||||| | |||||||
Sbjct 250 CGCATTGAGAATTCGGTTTATACTTTTGAAATGTTGGAGGATCAGCCCTGTAGAGTAGGT 309
Query 322 TGCCGTGTTAAACTTAATGCTGACTCCACCAAGAATTTCAAGGAAAAGATTGATGATGAA 381
|||||||||| | | ||||||| || | || ||||||| ||| |||||||||||||||
Sbjct 310 TGCCGTGTTAGAGTCGATGCTGAGTCTGCTAAAAATTTCAGGGAGAAGATTGATGATGAA 369
Query 382 TACAGGGCTAATATGATTCTTGATAATCTTCCAGTAGCTGTACTAAGACAAAGGAGAGAT 441
||| | |||||||||||||||||||| ||||| |||||||| || |||||||| | ||||
Sbjct 370 TACCGAGCTAATATGATTCTTGATAACCTTCCGGTAGCTGTTCTTAGACAAAGAAAAGAT 429
Query 442 GGAAGTCAATCAACGACTTATGAACACGGTTTTCGTGTTGGCTTTAAAGGGAGTTATGAA 501
|||| ||| || |||||||||||||| ||||| ||||||||||| ||||||||||| |||
Sbjct 430 GGAATTCAGTCGACGACTTATGAACATGGTTTCCGTGTTGGCTTCAAAGGGAGTTACGAA 489
Query 502 GGGAGCAAAGAGGAGAAATACTTTATACATAATCACTTGAGCTTCCGAGTCATGTACCAC 561
||||| |||||| | ||||||||||| ||||| || ||||| ||||||||||||||||||
Sbjct 490 GGGAGTAAAGAGAAAAAATACTTTATCCATAACCATTTGAGTTTCCGAGTCATGTACCAC 549
Query 562 AGAGACCAAGAGTCTGATTCTGCTCGAATTGTTGGATTTGAGGTTACGCCTAACAGTATC 621
||||| ||||||||||||||| |||| |||||||| ||||||||||||||||||||| |
Sbjct 550 AGAGATCAAGAGTCTGATTCTTCTCGCATTGTTGGTTTTGAGGTTACGCCTAACAGTGTA 609
Query 622 TTGCATGAATACAAGGAGTGGGATGaaaaaaaTCCTCAGTTAACAACATGTAATAAGGAC 681
|||||||| ||||| || ||||||||||| |||| ||||||||||||||| || || |||
Sbjct 610 TTGCATGAGTACAAAGATTGGGATGAAAATAATCGTCAGTTAACAACATGCAACAAAGAC 669
Query 682 ACGAAGAATCTAATCCAAGGCAACACTGTCCCTCAAGAAGTTGAGCAAGGAAAAGAAATA 741
|| |||||||| |||||| |||||||||| ||||||||||||||| |||||||||||||
Sbjct 670 ACAAAGAATCTGATCCAAAGCAACACTGTTCCTCAAGAAGTTGAGGAAGGAAAAGAAATT 729
Query 742 GTGTTTACATATGATGTCTCGTTTAAGGAGAGTGAAATCAAATGGGCTTCTCGGTGGGAC 801
|||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 730 GTGTTTACATATGATGTCGCCTTTAAGGAGAGTGAAATCAAATGGGCTTCTCGATGGGAC 789
Query 802 ACGTACCTT-CTCATGAACGATGATCAAATCCACTGGTTTTCCATCATAAATTCACTTAT 860
|| || || || ||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 790 ACATA-TTTGCTAATGAACGATGATCAAATCCACTGGTTTTCAATCATAAACTCGCTTAT 848
Query 861 GATTGTCCTTTTCCTTTCTGGAATGGTAGCCATGATCATGATGAGAACTTTATACAAGGA 920
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 849 GATTGTCCTTTTCCTCTCTGGAATGGTAGCGATGATCATGATGAGAACTTTATACAAGGA 908
Query 921 TATCTCAAACTACAATCAGCTCGAGACCCAAGATGAGGCCCAGGAAGAGACTGGATGGAA 980
||| ||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct 909 TATTTCAAACTACAATCAGCTCGAGACCCAAGACGAGGCTCAGGAAGAAACAGGATGGAA 968
Query 981 GCTTGTACACGGAGATGTCTTCAGGCCACCGGTGAACTCTGGTTTATTGTGTGTTTATGT 1040
|||||||| ||||||||||| ||| | || |||||||||| ||| |||||||||||||
Sbjct 969 ACTTGTACATGGAGATGTCTTTAGGACGCCCATGAACTCTGGGTTACTGTGTGTTTATGT 1028
Query 1041 TGGTACAGGTGTTCAGATCTTCGGAATGTCACTTGTTACAATGATGTTTGCGTTGCTTGG 1100
|| |||||| ||||||| || || ||| | ||||| |||||||||||||| ||||| ||
Sbjct 1029 CGGCACAGGTCTTCAGATTTTTGGTATGACTCTTGTGACAATGATGTTTGCATTGCTGGG 1088
Query 1101 CTTCTTATCTCCATCCAACAGAGGAGGGCTTATGACTGCCATGGTTCTCTTGTGGGTTTT 1160
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 1089 CTTCTTATCTCCATCCAACAGAGGAGGGCTCATGACTGCCATGGTTCTCTTATGGGTATT 1148
Query 1161 CATGGGCATATTCGCTGGTTACTCCTCGTCTCGCCTTCACAAAATGTTCAAAGGAAACAA 1220
|||||||||||| ||||||||||| || ||||| |||||||||||||||||||| || |
Sbjct 1149 CATGGGCATATTTGCTGGTTACTCATCTTCTCGTCTTCACAAAATGTTCAAAGGGAATGA 1208
Query 1221 GTGGAAGAGAATGACCTTGAAGACTGCATTCATGTTTCCCGGTATCCTTTTTGCTATCTT 1280
|||||| ||||| |||||||||||||||||||||||||||||||| || || || |||||
Sbjct 1209 GTGGAAAAGAATCACCTTGAAGACTGCATTCATGTTTCCCGGTATACTCTTCGCGATCTT 1268
Query 1281 CTTTGTTCTGAATGCCCTTATTTGGGGAGAAC-AGTCATCTGGAGCCATACCATTTGGTA 1339
||| ||||| || | || || |||||||||| | ||||| |||||||| || |||||||
Sbjct 1269 CTTCGTTCTCAACACACTCATATGGGGAGAACGA-TCATCCGGAGCCATTCCCTTTGGTA 1327
Query 1340 CAATGTTTGCTCTCT-TCTGCCTCTGGTTTGGCATCTCAGTCCCACTAGTCTTCGTTGGT 1398
||||||||||||| | |||| ||||||||||| ||||| ||||||||||||||| | |||
Sbjct 1328 CAATGTTTGCTCT-TGTCTGTCTCTGGTTTGGAATCTCTGTCCCACTAGTCTTCATAGGT 1386
Query 1399 AGCTATCTGGGTTACAAGAAGCCAGCAATTGAAGATCCAGTCAAAACAAACAAGATCCCG 1458
|||||||| ||| |||| || | ||||| |||||||| |||||||| ||||||||||||
Sbjct 1387 AGCTATCTCGGTCACAAAAAATCTGCAATCGAAGATCCGGTCAAAACTAACAAGATCCCG 1446
Query 1459 AGGCAAGTACCAGAGCAGCCGTGGTACATGAAACCAGTTTTCTCTATACTAATTGGAGGC 1518
|| |||||||||||||| || |||||||||||||| ||||| || ||||||||||||||
Sbjct 1447 AGACAAGTACCAGAGCAACCTTGGTACATGAAACCTGTTTTTTCCATACTAATTGGAGGA 1506
Query 1519 ATTCTCCCGTTTGGAGCAGTCTTCATCGAGCTCTTCTTCATCTTGACATCTATATGGCTG 1578
|| || || ||||||||||||||||| ||||||||||||||| | ||||| || |||||
Sbjct 1507 ATCCTTCCATTTGGAGCAGTCTTCATTGAGCTCTTCTTCATCCTAACATCAATCTGGCTC 1566
Query 1579 AACCAGTTCTACTACATCTTCGGGTTCCTCTTTATAGtttttttGATCTTGATCGTCACC 1638
||||| ||||||||||| || || |||||||| || || || |||||||||||||| |||
Sbjct 1567 AACCAATTCTACTACATTTTTGGATTCCTCTTCATCGTGTTCTTGATCTTGATCGTGACC 1626
Query 1639 TGTGCAGAGATCACAGTGGTGCTCTGCTACTTCCAGCTTTGTAGCGAAGACTACAACTGG 1698
|| |||||||||||| | || ||||||||||| ||||| || || ||||||||||| |||
Sbjct 1627 TGCGCAGAGATCACAATTGTCCTCTGCTACTTTCAGCTCTGCAGTGAAGACTACAATTGG 1686
Query 1699 TGGTGGAGAGCTTACTTAAC-TGCGGGCTCATCCGCT-TTCTACCTCTTCCTCTACTCAA 1756
||||||||||||||| | || | | ||||||||| | || ||||||||||| |||||
Sbjct 1687 TGGTGGAGAGCTTACCTCACAT-CAGGCTCATCCTCACTT-TACCTCTTCCTTTACTCGG 1744
Query 1757 TCTTCTACTTCTTCACAAAGCTGGAGATCACAAAGCTAGTCTCGGGAATGCTCTACTTCG 1816
|||||||||||||||||||||| |||||| |||| || ||||| ||| ||||||||||||
Sbjct 1745 TCTTCTACTTCTTCACAAAGCTTGAGATCTCAAAACTTGTCTCAGGATTGCTCTACTTCG 1804
Query 1817 GGTACATGATTATCATCTCTTACGCATTCTTCGTCCTAACTGGCACAATCGGTTTCTATG 1876
|||||||||| || ||||||||| | || ||||| ||||| ||| ||||||||||||| |
Sbjct 1805 GGTACATGATCATTATCTCTTACTCGTTTTTCGTGCTAACCGGCTCAATCGGTTTCTACG 1864
Query 1877 CTTGCTTCTGGTTCGTGAGAAAGATCTACTCCTCAGTGAAGATTGACT-AGA 1927
| || || |||||||| ||||||||||||||||| ||||||||||||| |||
Sbjct 1865 CATGTTTATGGTTCGTTAGAAAGATCTACTCCTCGGTGAAGATTGACTGAGA 1916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79227709600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5