BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13780.1
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929135 jgi|Araly1|929135|scaffold_301592.1 1232 0.0
> Ahg929135 jgi|Araly1|929135|scaffold_301592.1
Length=915
Score = 1232 bits (667), Expect = 0.0
Identities = 838/917 (91%), Gaps = 25/917 (3%)
Strand=Plus/Plus
Query 51 TCTCTGTGAAAGTGAAGAAACCACCATGGAAATCGAAGGCGAAGACGGCACGAAGCTCTT 110
||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTGTGAAAGTCAAGAAAGCAGCATGGAAATCGAAGGCGAAGACGGCACGAAGCTCTT 60
Query 111 CCTGAAGACCGGAGTTAAGGATGTATTCGGAAGAGGAGCGGGATTCAACACCGAAGACCT 170
||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTGAAGGCCAGAGTTAAGGCTGTATTCGGAAGAGGAGCGGGATTCAACACCGAAGACCT 120
Query 171 AACAGTGTCACGCCGCCATGTTTCACTCGTATTCAAACCCGCCGCCGCCGGAACCGAACC 230
|||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||
Sbjct 121 AACAGTGTCACGCCGCCACGTTTCACTCGAATTCAAACCCTCCGCCGCCGGAACCGAACG 180
Query 231 GTCCGATATGGTTTCCTTCGAGGTTCTCGGGAGGAATCCAGTCTGGATAAGGGCC-GTTG 289
|||||||| ||||||||||||||||||||||||||||||||||||| ||| || | ||
Sbjct 181 GTCCGATACGGTTTCCTTCGAGGTTCTCGGGAGGAATCCAGTCTGGGTAA-TTCCGGGTG 239
Query 290 AAAAGGGCAAAAAGATTCAAACTTTGAGGAAACCCGAGACTGGAGAAATCGCCACCGGCG 349
||| |||||||||||||||||||||||||||| | | ||| |||||||||||| ||||||
Sbjct 240 AAACGGGCAAAAAGATTCAAACTTTGAGGAAATCGGGGACAGGAGAAATCGCCGCCGGCG 299
Query 350 ATCAATTTTGTGTATCGGGTAATCACCCCATTTGGTTCACTTTGAAGAGACGCGATGAAG 409
||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 300 ATCGATTTTGTGTATCGGGTAATCTCCCAATTTGGTTCACTTTGAAGAGACGCGATGAAG 359
Query 410 TTATGGAGGAGCGAGCATTGGATCATGGTGAAATCGAATTGAATATTGATCCTGTTAAAG 469
||||||||||| ||||||||| | |||||||||||||||| ||||||||||||||||||
Sbjct 360 TTATGGAGGAGAGAGCATTGG--C-TGGTGAAATCGAATTGGATATTGATCCTGTTAAAG 416
Query 470 AGTTTGGATTTCTTGTGATTGGGAAAGAATTTGATCAGTATCCAAAGAGTAGGGTGCGTG 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGTTTGGATTTCTTGTGATTGGGAAAGAATTTGATCAGTATCCAAAGAGTAGGGTGCGTG 476
Query 530 ACATAAAGCAATGGGAATGGTTTTTAGAGGATTCCACTAATGGAAATAGCGATGGTGATg 589
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 477 ACATAAAGCAATGGGAATGGTTTTTAGAGGATTCCACTAATGGAAATAGTGATGATGATG 536
Query 590 aagatggagataagaagg-gaaggaagggattagggaaaaagagaagaaggaagaaaggg 648
|||||||||||||||||| || ||||||||||||| ||||||||| |||||||||| |||
Sbjct 537 AAGATGGAGATAAGAAGGTGA-GGAAGGGATTAGGCAAAAAGAGAGGAAGGAAGAACGGG 595
Query 649 aaTGAGGATGATGATTGGAGTGTGGAAAGTGATGAAGATAAAGAGTTGATGGTGAAATCA 708
|||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 596 AATGAGGACGACGATTGGAGTGTGGAAAGTGATGAAGATAAAGAGTTAATGGTGAAATCG 655
Query 709 AAAAGAGTTGTGACTCCTACTTACTCGACTAGATCCAAGAAGACGAAGAAAGATTCAAAC 768
||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||
Sbjct 656 AAAAGAGTTGTGACTCCCACTTACTCAACTAGATCCAAGAAGACGAAGAAAGATACAAAC 715
Query 769 GCtagtagtagtagtagtaATGGTGCTCAAACTAAACAGCGTGGAAGAGCAGATGTCGAG 828
|| ||||||||| |||| ||||||||||||||||| || ||||||| |||||||||
Sbjct 716 GCAAGTAGTAGTTGTAGC---GGTGCTCAAACTAAACAACGAGGAAGAGTAGATGTCGA- 771
Query 829 GAAGAAGATGATGATGATGAAACATTGGGAGGTTTCATTGTTAGTGATgaagaagctaag 888
| || ||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 772 -A-GA---TGATGATGATGAAACATTGGGCGGTTTCATTGTTAGTGATGAAGAAGCCAAT 826
Query 889 ttagaagaagaagaagaagaagaagacgaatcagatgtagatgatgaagaagatgaagac 948
||||||||||| | || ||| ||| | | ||||| | |||||||||||||||||||
Sbjct 827 TTAGAAGAAGA-G--GATGAATCAGAT-A-T-AGATG-A--TGATGAAGAAGATGAAGAC 877
Query 949 gaagaagaagaagaaTA 965
||||| || ||| ||||
Sbjct 878 GAAGACGAGGAATAATA 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35873664897
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5