BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13782.1
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318159 jgi|Araly1|318159|fgenesh1_pm.C_scaffold_3001175 1345 0.0
> Ahg318159 jgi|Araly1|318159|fgenesh1_pm.C_scaffold_3001175
Length=1011
Score = 1345 bits (728), Expect = 0.0
Identities = 792/824 (96%), Gaps = 0/824 (0%)
Strand=Plus/Plus
Query 118 AACCTAACCTTAAAGCGACCATTTGATGTGAAAAAACTCTCACCTAAAGTTACCAAACGT 177
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 163 AACCTAACCTTAAAGCGACCATTTGATGTCAAAAAACTCTCACCTAAAGTCACCAAACGT 222
Query 178 GTTCTGTTCCTCAAAGACATTCAGGTTACACACGATGAACTCGAAGAGAAGTTTCTTGCT 237
|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 223 GTTCTGTTCCTCAAGGACATTCAGGTTAAACACGATGAACTCGAAGAGAAGTTTCTTGCG 282
Query 238 GAGAAATCTGCATTGGAGGCAACATATGATAATCTCTACAAGCCGCTTTTTGCTAAGAGG 297
|||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 283 GAGAAAGCTGCATTGGAGGCAACATACGATAATCTCTACAAGCCGCTTTTTGATAAGAGG 342
Query 298 TATGAAATTGTGAATGGTGTGGTCGAAGCTGAAGCAGAGAAAGAAGGAGTTCCCAATTTC 357
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 343 TATGAAATTGTGAATGGTGTGGTTGAAGCTGAAGCAGAGAAAGAAGGAGTGCCCAATTTT 402
Query 358 TGGTTGATTGCAATGAAAACCAATGAAATGCTCGCAAATGAGATAACGGAAAGAGATGAG 417
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 403 TGGTTGATTGCAATGAAAACCAACGAAATGCTCGCCAATGAGATAACCGAAAGAGATGAG 462
Query 418 GCAGCATTGAAGTATCTTAAGGACATCAGATCTTGCAGAGTTGAAGACACTTCAAGAAAT 477
| ||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||
Sbjct 463 GGAGCATTGAAGTATCTAAAAGACATCAGATCTTGCAGAGTTGAAGACAATTCAAGAAAT 522
Query 478 TTCAAGCTGGAGTTTCTCTTTGATTCTAATCTTTACTTCAAGAACTCGGTTCTGTCTAAA 537
||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct 523 TTCAAGCTGGAGTTTCTCTTTGACCCCAATCCTTACTTCAAGAACTCGGTTCTGTCTAAA 582
Query 538 ACTTACCATGTGAACGATGAAGATGGTCCTGTTCTTGAGAAAGTGATTGGAACGGACATA 597
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 ACTTACCATGTGAATGATGAAGATGGTCCTGTTCTTGAGAAAGTGATTGGAACGGACATA 642
Query 598 GAATGGTTTCCAGGTAAATGTTTGACTCATAAGGTTGTTGTGAAGAAGAAAACAAAGAAA 657
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 643 GAATGGTGTCCAGGTAAATGTTTGACTCATAAGGTTGTTGTGAAGAAGAAAGCAAAGAAA 702
Query 658 GGGCCAAAGAAGGTCAACAACATCCCCATGACCAAAACAGAAAACTGCGAGAGTTTCTTC 717
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 703 GGGCCAAAGAAGGTCAACAACATCCCCATGACCAAAACCGAAAACTGCGAGAGTTTCTTC 762
Query 718 AATTTCTTCAAGCCACCTGAGATTCCTGAGATTGATGAAGTTGACGATTACGATGATTTT 777
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 AATTTCTTCAAGCCGCCTGAGATTCCTGAGATTGATGAAGTTGACGATTACGATGATTTT 822
Query 778 GATACCATTATGACGGAAGAACTACAAAACCTGATGGACCAAGACTATGACATTGCTGTG 837
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 823 GATACCATTATGACGGAAGAACTCCAAAACCTGATGGACCAAGACTATGACATTGCTGTG 882
Query 838 ACAATCCGAGATAAACTGATCCCTCATGCAGTTTCATGGTTTACGGGAGAGGCTCTTGTt 897
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 883 ACAATCCGAGATAAACTGATCCCTCATGCAGTTTCATGGTTTACTGGAGAGGCTCTTGTT 942
Query 898 gatgaagacgattctgatgataatgatgatgatgataatgatga 941
||||||||||||| ||||||| |||||||||||||| |||||||
Sbjct 943 GATGAAGACGATTATGATGATGATGATGATGATGATGATGATGA 986
Score = 141 bits (76), Expect = 9e-33
Identities = 92/100 (92%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 18 CATCAAATCTGATAATAAGAGCGGCGATTCCTCTGATCTCCCTACCATTCCCGCCTTAGA 77
||||||| | |||||||||| |||||| |||||||||||||||| |||||||||||||||
Sbjct 27 CATCAAAGCCGATAATAAGACCGGCGAATCCTCTGATCTCCCTAGCATTCCCGCCTTAGA 86
Query 78 TATTGGGGCAGAGGAATGTGATCTTCTTGCAGAGCTTAAG 117
||||||||||||||| |||||| ||||||| |||||||||
Sbjct 87 TATTGGGGCAGAGGATTGTGATATTCTTGCGGAGCTTAAG 126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35416189893
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5