BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13784.1
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341506 jgi|Araly1|341506|fgenesh1_pg.C_scaffold_3001269 2477 0.0
Ahg478781 jgi|Araly1|478781|fgenesh2_kg.3__1482__AT3G13790.1 763 0.0
> Ahg341506 jgi|Araly1|341506|fgenesh1_pg.C_scaffold_3001269
Length=1722
Score = 2477 bits (1341), Expect = 0.0
Identities = 1599/1724 (93%), Gaps = 16/1724 (1%)
Strand=Plus/Plus
Query 1 ATGGCTAATATAGTTTGGTGTAACATTGCCATGTTCTTGTTGGTCTCGTTGTTTCTCACT 60
||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||
Sbjct 1 ATGGCTACTATAGTTTGGTGTAACATTGCCATTTTCTTGTTGGTCTTGTTGTTTCTCGCT 60
Query 61 GACGATGCTGTTGTTGTTCTTGATGCCTTGGACAACGTTCCCAATAATATCAAGAACCAA 120
||| ||||| |||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 61 GACAATGCTATTGTTGTTCTTGATGCTTTGCACAACGTCCCCAATAATATCAAGAACCAA 120
Query 121 CCTTACCGAACCGGTTATCATTTCCAGCCTCCCAAAAATTGGATGAACGGGCCTATGATA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTTACCGAACCGGTTATCATTTCCAGCCTCCCAAAAATTGGATGAACGGGCCTATGATA 180
Query 181 TACAAAGGAATCTATCATCTATTCTATCAATGGAACCAAAACGGCGCCGTCATGGACGTT 240
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 TACAAAGGAATCTACCATCTATTCTACCAATGGAACCAAAACGGCGCCGTCATGGACGTA 240
Query 241 AACAAAACCGTATGGGGCCATGCAACATCAACGGATCTAATCAACTGGATCACACTTTCT 300
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 AATGAAACCGTATGGGGCCATGCAACGTCAACGGATCTAATCAACTGGATCACACTTTCT 300
Query 301 CCAGCAATCAGACCATCTCGACCGTCCGATATTAACGGATGCTGGTCCGGCTCCGTCACG 360
|||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 301 CCAGCAATCAAACCATCTCGACCGTCCGATATCAACGGATGCTGGTCAGGCTCCGTCACG 360
Query 361 ATTCTC-CCTAATGGCAAACCTGTAATTCTTTACACCGGCAACGACCGTTATAACCGCCA 419
|||||| || ||||||||||| |||||| |||||||||| ||||||||||||||||| ||
Sbjct 361 ATTCTCACC-AATGGCAAACCCGTAATTATTTACACCGGTAACGACCGTTATAACCGTCA 419
Query 420 GGTCCAAAACTTAGTTAAACCTAAAAACCTCACCGATCCATATCTACGGCACTGGACCAA 479
|||||||||| ||| |||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 420 GGTCCAAAACCTAGCTAAACCTAAAAACCTCACCGATCCATATCTCCGTCACTGGATAAA 479
Query 480 ATCGCCGGAAAATCCCCTCGTGACACCTAGCCCCGTCAACCACATCAACTCCAGCGCGTT 539
|||||||||||||||||| |||||||| | | |||| |||||||||||||||| ||||||
Sbjct 480 ATCGCCGGAAAATCCCCTTGTGACACCGAACGCCGTAAACCACATCAACTCCACCGCGTT 539
Query 540 TCGTGATCCAACCACCGCGTGGTTTGGCCGTGACGGGCGTTGGCGCATAACCACCGGAAG 599
|||||||||||||||||||||| | ||||||||| ||||||||| |||||||| |||||
Sbjct 540 TCGTGATCCAACCACCGCGTGGCTAGGCCGTGACAAGCGTTGGCGTATAACCACTGGAAG 599
Query 600 CCAAGAAGGTCGACGTGGATTAGCGATTCTACACACGAGCAAAGATTTCGTAATATGGAA 659
|||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 600 CCAAGAAGGTCGCCGTGGATTAGCGATTCTACACACGAGCCGCGATTTCGTACGATGGAA 659
Query 660 GCAATCTCCAAAGCCTCTTCATTACCACGACGGTACCGGAATGTGGGAGTGCCCTGATTT 719
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 660 GCAATCTCCGAAGCCTCTTCATTACCACGAAGGTACCGGAATATGGGAGTGCCCTGATTT 719
Query 720 TTTCCCGGTGGCTAGAACTGATTCACGGGGCCTAGATACGTCTTTTTCAAG-TGGGCCGA 778
|||||||||| | |||||||||||||| ||||| |||||||| | || | ||||||||
Sbjct 720 TTTCCCGGTGTCGAGAACTGATTCACGCGGCCTCGATACGTCGTCGTCT-GCTGGGCCGA 778
Query 779 TGGTTAAACACGTCCTTAAAGTGAGCTTAACAGATACGTTTAATGATTACTACACGATTG 838
|| |||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 779 TGATTAAACACGTGCTTAAAGTGAGCTTAACAGATACTTTTCGTGATTACTACACGATTG 838
Query 839 GTACGTACGATGAAGTGAGAGATGTCTACGTACCGGACAAGGGTTTTGTTCAGGACGAAA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GTACGTACGATGAAGTGAGAGATGTCTACGTACCGGACAAGGGTTTTGTTCAGGACGAAA 898
Query 899 CGGCTCCGAGATATGATTACGGCAAATTTTATGCGTCGAAAACATTTTACGACTCTGTTA 958
||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 899 CGGCTCCGAGATACGATTACGGCAAATTTTACGCGTCGAAGACATTTTACGACTCGGTTA 958
Query 959 ATCAGCGCAGGATTTTGTGGGGTTGGGTTAACGAGTCGTCACCGGAGAAAGATAACATCA 1018
|||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 959 ATCAACGGAGGATTTTGTGGGGTTGGGTTAACGAGTCGTCGCCGGAGAAAGATAACATCG 1018
Query 1019 AGAAGGGTTGGGCCGGTTTACAGGCTATTCCTAGGAAAGTATGGCTTGATGAATCAGGAA 1078
||||||||||||| ||||| ||||||||||||||| |||||||||||||| ||||||| |
Sbjct 1019 AGAAGGGTTGGGCTGGTTTGCAGGCTATTCCTAGGGAAGTATGGCTTGATAAATCAGGCA 1078
Query 1079 AGAGATTGGTGCAATGGCCGGTTAAGGAAATAGAGAGGTTACGTACAACGCAAGTCAAGT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AGAGATTGGTGCAATGGCCGGTTAAGGAAATAGAGAGGTTACGTACAACGCAAGTCAAGT 1138
Query 1139 GGGGAAACAAACTATTGAAAGGAGG-G--TCGGTAATGGAGGTTCATGGAGTCACAGCTC 1195
||| ||||||| | ||||||||||| | ||||| || |||||||||||||||||||||
Sbjct 1139 GGGTAAACAAAGTTTTGAAAGGAGGAGGATCGGTCATAGAGGTTCATGGAGTCACAGCTT 1198
Query 1196 CACAAGCAGATGTGGAAGTTTTCTTCAAAGTGAGTGGTTTTGACTTAGAGAAAGCAGATG 1255
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1199 CACAAGCAGATGTGGAGGTTTTCTTTAAAGTGAGTGGTTTAGACTTAGAGAAAGCAGATG 1258
Query 1256 TGATTGAACCGGGCTGGACCGATCCGCAATTGATCTGCAGTCAGAGGAATGCGTC----- 1310
||||||||||||||||||||||||| |||||||| |||||| ||| |||||| ||
Sbjct 1259 TGATTGAACCGGGCTGGACCGATCCACAATTGATTTGCAGTGAGAAGAATGCATCGTTTG 1318
Query 1311 --A-T-CAGGTTTAGGTCCATTCGGTTTAATGGTTCTAGCTTCCAAGAACATGGAAGAGT 1366
| | | |||||||| |||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1319 TTAATTCCGGTTTAGGCCCATTCGGTTTAATGGTTCTTGCTTCCAAGGACATGGAAGAGT 1378
Query 1367 ATACATCGGTCAATATCAGAATCTTCAGAGCTGGTGAGAATAGTAAGGAGCACGTAGTGG 1426
|||||||||||||| |||||||||| |||||| ||| ||||| |||||||||||||||||
Sbjct 1379 ATACATCGGTCAATTTCAGAATCTTTAGAGCTCGTGGGAATAATAAGGAGCACGTAGTGG 1438
Query 1427 TCATGTGCAGTGACCAAAGCACATCAAGTTTAGAGAAAGGGAATGATAAAACAACTTATG 1486
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1439 TCATGTGCAGTGACCAAAGCAGATCAAGTTTAGAGAAAGGGAATGATAAAACAACATATG 1498
Query 1487 GTGCTTTTTTAGATATCTCTCCTTATCAACCAATCTCTCTCAGGACTTTGATTGATAAAT 1546
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GTGCTTTTATGGATATCTCTCCTTATCAACCAATCTCTCTCAGGACTTTGATTGATAAAT 1558
Query 1547 CAATAGTGGAGAGCTTTGGTGGGAAAGGGAAAACATGTATTACCTCGAGAGTTTATCCAA 1606
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 1559 CAATAGTGGAGAGCTTTGGTGGAAAAGGGAAAACATGTATTACCTCAAGAGTATATCCAA 1618
Query 1607 AATTGGCAATAGGAGAAAGAACACATCTCTTTGCTTTTAACAAGGGATCTCAAAATGTTA 1666
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 AATTGGCAACAGGAGAAAGAACACATCTCTTTGCTTTTAACAAGGGATCTCAAAATGTTG 1678
Query 1667 ATGTTTTAAGCCTAAGTGCTTGGAGCATGAAGTCTTCTCTTTAA 1710
|| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1679 ATATCTTAAGCCTAAGTGCTTGGAGCATGAAGTCTTCTCTTTAA 1722
> Ahg478781 jgi|Araly1|478781|fgenesh2_kg.3__1482__AT3G13790.1
Length=1962
Score = 763 bits (413), Expect = 0.0
Identities = 1256/1649 (76%), Gaps = 113/1649 (7%)
Strand=Plus/Plus
Query 115 AACCAACCTTACCGAACCGGTTAT-CATTTCCAGCCTCCCAAAAATTGGATGAACGGGCC 173
||||| || ||||| || |||| | ||||| || ||||| ||||||||||||||||||||
Sbjct 174 AACCAGCCCTACCGGACAGGTT-TCCATTTTCAACCTCCAAAAAATTGGATGAACGGGCC 232
Query 174 TATGATATACAAAGGAATCTATCATCTATTCTATCAATGGAACCA-AAACGGCGCCGTCA 232
|||||||||||||||||| |||||||| ||||| |||||||||| ||| || || ||
Sbjct 233 TATGATATACAAAGGAATATATCATCTTTTCTACCAATGGAACCCGAAA-GGAGCTGTG- 290
Query 233 TGGACGTTAACAAAACCGTATGGGGC-CATGCAACATCAACGGATCT-AATCAACTGGAT 290
||| || |||| | || |||| | ||| | || ||||| || || |||||||||||
Sbjct 291 TGGG-GT-AACAT--C-GTGTGGG-CTCATTCCACGTCAACAGA-CTTAATCAACTGGAA 343
Query 291 CACACTTTCTCCAGCAATCAGACCATCT-CGACCGTCCGATATTAACGGATGCTGGTCCG 349
| ||| | ||||||| ||| |||||| | ||||| |||||| ||||||||||||||||
Sbjct 344 CCCACATCCTCCAGCTATCTTCCCATCTGC-ACCGTTCGATATCAACGGATGCTGGTCCG 402
Query 350 GCTCCG-TCACGATTCTCCCTAATGGCAAACCTGTAATTCTTTACACCGGCAA-CGACCG 407
| || | | || |||||||||||||||||||| || ||||| || ||||| || |||||
Sbjct 403 GTTCGGCT-ACAATTCTCCCTAATGGCAAACCGGTTATTCTATATACCGG-AATCGACCC 460
Query 408 TTATAACCGCCAGGTCCAAAACTTAGTTAAACCTAAAAACCTCACCGATCCATATCTACG 467
| | |||| |||||||||||| ||| | ||||| || ||| | ||||| ||||| ||
Sbjct 461 TAAGAACCAACAGGTCCAAAACATAGCGGAGCCTAAGAATCTCTCTGATCCTTATCTCCG 520
Query 468 -GCACTGGACCAAATCGCCGGAAAATCCCCTCG-TGACACCTAGCC-CCGTCAACC-ACA 523
| | |||| ||||||||| |||||| || | || | ||| | | |||| ||| | |
Sbjct 521 AGAA-TGGAAAAAATCGCCGTTAAATCCTCT-GATGGCTCCT-GACGCCGTTAACGGA-A 576
Query 524 TCAACTCCAGCGCGTTTCGTGATCCAACCACCGCGTGGTTTGGCCGTGACGGGC-GTTGG 582
||||| ||||| |||| ||||| ||||||||||||||| | |||| ||| | || ||
Sbjct 577 TCAACGCCAGCTCGTTCCGTGACCCAACCACCGCGTGGCTAGGCCAAGACAAGAAGT-GG 635
Query 583 CGCA-TAACCACCGGAAGCCAAGAAGGTC-GACGTGGATTAGCGATT-CTACACACGAGC 639
| | | | | ||||||| |||| | | |||||| |||||||| || |||||||
Sbjct 636 AG-AGTGATTATCGGAAGC-AAGATTCACCGTCGTGGACTAGCGATTACTT-ACACGAGT 692
Query 640 AAAGA-TTTCGTAATATGG-AAGCAATCTCCAAAGCCTCTT-CATTACCACGACGGTACC 696
||||| |||| ||| |||| || |||||||| |||| || |||||| ||||||| |
Sbjct 693 AAAGACTTTC-TAAAATGGGAAA-AATCTCCAGAGCCG-TTGCATTACGACGACGGAAGT 749
Query 697 GGAATGTGGGAGTGCCCTGATTTTTTCCCGGTGGCTAGAACTGATTC-A-CGGGGCCTAG 754
||||||||||| || |||||||||||||||||| | ||| || ||| | ||| | | |
Sbjct 750 GGAATGTGGGAATGTCCTGATTTTTTCCCGGTGACGAGATTTGGTTCTAACGGCG--TGG 807
Query 755 ATACGTCTT--TTTCAAGTGGGCCGA-TG-G-TT--AAA-CACGTCCTT-AAAGTGAGCT 805
| ||||||| ||| |||| || | || | || ||| ||||| || ||||| ||||
Sbjct 808 AAACGTCTTCGTTTG--GTGGACCTAATGAGATTTTAAAGCACGTG-TTGAAAGTAAGCT 864
Query 806 TA-ACAGATACGTTTA-ATGATTACTACACGATTGGTACGTACGAT-GAAGTGAGAGATG 862
| || |||||| | ||||||| |||||||||||||||||||| | || | ||||
Sbjct 865 TGGAC-GATACGAA-ACATGATTATTACACGATTGGTACGTACGACCGG-GTTAAAGATA 921
Query 863 TCTACGTACCGGACAA-GGGTTTT-GTTCAGGAC-GAAACGGCTCCGAGATATGATTACG 919
| |||||||||||| |||||| | | |||| | | ||||||| ||||| |||||||
Sbjct 922 AATTCGTACCGGACAATGGGTTTAAGAT--GGACAGTA-CGGCTCCAAGATACGATTACG 978
Query 920 GCAAATTTTATGCGTCGAAAACATTTTACGACTCTGTTAATCAGCGCAGGATTTTGTGGG 979
| || | ||| ||||||||||| ||||| ||||||| || | || || || |||||||
Sbjct 979 GGAAGTATTACGCGTCGAAAACGTTTTATGACTCTGGCAAGAACCGGAGAATCTTGTGGG 1038
Query 980 GTTGGGTTAACGAGTCGTCACCGGA-GAAAGATAACATCAAGAAGGGTTGGGCCGGT-TT 1037
||||| ||||||||| || | | || ||| | | |||| || ||| ||||| ||
Sbjct 1039 GTTGGACTAACGAGTCATCGTCTGTTGAG-GATGATGTTGAGAAAGGCTGGTCCGGTATT 1097
Query 1038 ACAGGCTATTCCTAGGAAAGTATGGCTTGAT-GAATCAGG-AAAGAGATTGGTGCAATGG 1095
||| | ||||| |||||| ||||||||||| || ||||| ||| | ||| | || |||
Sbjct 1098 -CAGACGATTCCGAGGAAAATATGGCTTGATCGA-TCAGGGAAACA-ATTAATTCAGTGG 1154
Query 1096 CCGGTTAAGGAAATAGAGAGGTTACGTAC-AACGCAAGTCAAG---TGGGGAAACAAACT 1151
||||||| |||| | || || |||||||| || |||||||| | | |||||| |
Sbjct 1155 CCGGTTAGGGAAGTTGAAAGATTACGTACGAAA-CAAGTCAAAAACTTACGCAACAAAGT 1213
Query 1152 AT-TGAAAGG-AGGGTC--GG-TAATGGAGGT-TCATGGAGTCACAGCTCCACAAGCAGA 1205
| | |||| ||| || || | || || | | |||| || |||||| |||| || ||
Sbjct 1214 -TCT-AAAGTCAGGATCTAGGCT--TGAAG-TCT-ATGGTGTGACAGCTGCACAGGCGGA 1267
Query 1206 TGTGGAAGTTTTCTTCAAAGTGAGTGGTTTTGACTTAGAGAAAGCAGATGTGATTGAACC 1265
|||||||||||| |||||||| || | |||| |||||||| ||||| || ||||
Sbjct 1268 TGTGGAAGTTTTATTCAAAGTAAGAG------ACTTGGAGAAAGCGGATGTTATAAAACC 1321
Query 1266 GGGCTGGACCGATCCGCAATTGATCTGCAGTCAGAGGAATG---CG-TCA--TCAGGTTT 1319
| ||||| |||||||| ||||| || || |||| ||||| || | | || |||||
Sbjct 1322 AAGTTGGACTGATCCGCAGTTGATTTGTAGCCAGATGAATGTATCGGTTAAGTCTGGTTT 1381
Query 1320 AGGTCCATTCGGTTTAATGGTTCTAGCTTCCAAGAACATGGAAGAGTATACATCGGTCAA 1379
|||||||||||||||||||||| | || || ||||| |||||||||| ||||| || |
Sbjct 1382 AGGTCCATTCGGTTTAATGGTTTTGGCATCTAAGAATTTGGAAGAGTACACATCTGTTTA 1441
Query 1380 TATCAGAATCTTCAGAGCTGGTGAGAATAGTAAGGAGCACGTAGTGGTCATGTGCAGTGA 1439
| | |||||||||| |||| || | || || | || | || |||||||||||||||||
Sbjct 1442 TTTTAGAATCTTCAAAGCTCGTCAAAACAGCGATAAGTATGTTGTGGTCATGTGCAGTGA 1501
Query 1440 CCAAAGCACATCAAGTTTAGAGAAAGGGAATGATAAAACAACTTATGGTGCTTTTTTAGA 1499
|||||||| ||| | ||| ||| ||||| ||||| || || || |||||| | ||
Sbjct 1502 CCAAAGCAGATCTTCACTGGAGGAAGATAATGACAAAACGACCTACGGAGCTTTTGTGGA 1561
Query 1500 TATCTC-TCCTTATCAACCAATCTCTCTCAGGA-CTTTGATTGATAAATCAATAGTGGAG 1557
||| | |||| | |||||| | || ||||| | | ||||||||| | || ||||||||
Sbjct 1562 TAT-TAATCCTCACCAACCACTATCCCTCAG-ATCCTTGATTGATCATTCTGTAGTGGAG 1619
Query 1558 AGCTTTGGTGGGAAAGGGAAAA-CATGTATTACCTCGAGAGTTTATCCAAAATTGGCAAT 1616
|| |||||||| |||||| | | |||| |||||||| ||||| |||||||||||||||||
Sbjct 1620 AGTTTTGGTGG-AAAGGGGAGAGCATGCATTACCTCAAGAGTGTATCCAAAATTGGCAAT 1678
Query 1617 AGGAGAAAGAACACATCTCTTTGCTTTTAACAAGGGATCTCAAAATGTTAATGTTTTAAG 1676
|||| |||| ||||||||||||||||||| | |||| ||||| |||| || | ||||
Sbjct 1679 AGGAAAAAGTTCACATCTCTTTGCTTTTAATTATGGATATCAAAGTGTTGATCTCTTAAA 1738
Query 1677 CCTAAGTGCTTGGAGCATGAAGTCTTCTC 1705
||||| ||||||||||||||| ||| |||
Sbjct 1739 CCTAAATGCTTGGAGCATGAACTCTGCTC 1767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64143972580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5