BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13800.1
Length=1265
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929144 jgi|Araly1|929144|scaffold_301601.1 1869 0.0
> Ahg929144 jgi|Araly1|929144|scaffold_301601.1
Length=1124
Score = 1869 bits (1012), Expect = 0.0
Identities = 1090/1127 (97%), Gaps = 7/1127 (1%)
Strand=Plus/Plus
Query 38 TCCGAGATTCAGGAATTGGTAATGGCGGCTATGTCAGCGGTTCTGTCTCTGGGTTTAGGA 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TCCGAGATTCAGGAATTGGTAATGGCGGCTATGTCAGCGGTTCTGTCTCTGGGTTTAGGA 63
Query 98 ACACTCCGCCCTTCGCATCGTTCCTTGTCCTGTTTCGATTCCCTCCGGCACCACCAGACA 157
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 64 ACACTCCGCCCTTCGCATCGTTCCTTGTCCTGTTTCGATTCTCTCCGGCACCA---GACA 120
Query 158 TCTTTTCTCCGTTGCCACCAAAGTCTCATCTCTAGAAATACGACGAGGTCTCCGCTCAAC 217
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 121 TCTTTTCTCCGTTGCCACCAAAGTCTCATCTCTAGAAATACGA--AG-TCTCCGCTCAAC 177
Query 218 AAGATTCTTCAGGCTTGCCTTCAATCCAATTCTGCAAATGGTGATGCTTTGGTGTCATCA 277
||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||
Sbjct 178 AAGATTCTTCAGGCTTGCCTTCAATCCAACTATGCAAATGCTGATGCTTTGGTGTCATCA 237
Query 278 TCCGATGAAAGTTCTGAGATTGTATTTATGGGTACCGGAACCAGTGAAGGGATTCCTCGT 337
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 238 TCCGATGAAAGTTCTGAGATTGTATTTATGGGTACCGGAACAAGTGAAGGGATTCCTCGT 297
Query 338 GTCAGCTGCCTCACTAATCCTTTGAAAACATGTTCGGTATGCACAAAAGCAACAGAACCA 397
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GTTAGCTGCCTCACTAATCCTTTGAAAACATGTTCGGTATGCACAAAAGCAACAGAACCA 357
Query 398 GGAAACAGAAATAGGAGACTTAACACCAGCATTCTTGTTCGGTACATTAGACCATCCGGA 457
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 358 GGAAACAAAAATAGGAGACTTAACACCAGCATTCTTGTACGGTACATTAGACCATCAGGA 417
Query 458 ACAAGTAACATCCTCATTGATTGTGGCAAGTTCTTCTACCATAGTGCCCTTCGATGGTTT 517
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 418 ACAAGTAACATCCTCATTGATTGTGGCAAGTTCTTCTACCAGAGTGCCCTTCGATGGTTT 477
Query 518 CCCACCTTCGGGCTAAGAACACTTGATGCAGTTGTAATTACTCATTCTCATGCTGACGCA 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CCCACCTTCGGGCTAAGAACACTTGATGCAGTTGTAATTACTCATTCTCATGCTGACGCA 537
Query 578 ATTGGAGGTCTTGATGATCTTCGTGATTGGACAAACAATGTCCAACCTCACATTCCAATT 637
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 538 ATTGGAGGTCTTGATGATCTCCGTGATTGGACAAACAATGTTCAACCTCACATTCCAATT 597
Query 638 TACACTGCTATACGTGATCTCGAGGTGATGAAGAAGACCCATTATTACTTGGTTGATACA 697
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TACACTGCTATGCGTGATCTCGAGGTGATGAAGAAGACCCATTATTACTTGGTTGATACA 657
Query 698 AGTGTCATCATACCCGGAGCTGCAGTCTCAGAGTTGGAGTTTAAAGTCATACACGAGGAC 757
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 658 AGTGTCATCATACCCGGAGCTGCAGTCTCAGAGTTGGAGTTTAAAATCATACACGAGGAC 717
Query 758 CAGCCATTTGTGGTAAACGATCTGAAGATCACCCCATTACCTGTATGGCATGGAAGTAAC 817
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 718 CAACCATTTGTGGTAAACGATCTAAAGATCACCCCATTACCTGTATGGCATGGAAGTAAC 777
Query 818 TACCGTTCCCTTGGTTTCCGCTTTGGTAATGTCTGCTACATAAGCGATGTCAGTGACATA 877
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 778 TACCGTTCCCTTGGTTTCCGATTTGGTAACGTCTGCTACATAAGCGATGTCAGTGACATA 837
Query 878 CCGGAAGAAACCTACCCGCTCCTTAAAGACTGTGATCTCCTAATTATGGATGCTTTGAGG 937
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CCGGAAGAAACCTACCCACTCCTTAAAGACTGTGATCTCCTAATTATGGATGCTTTGAGG 897
Query 938 CCTGACCGGTCTTCAGCAACACACTTTGGCCTCCCAAGGGCGTTAGAGGAAGTTCGGAAA 997
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 898 CCTGACCGGTCTTCAGCAACACACTTTGGCCTCCCAAGAGCGTTGGAGGAAGTTCGGAAA 957
Query 998 ATCAAACCAAAAAGAACCCTTTTCACCGGAATGATGCATTTGATGGACCACGAGAAGGTG 1057
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 958 ATCAAACCAAAAAGAACTCTTTTCACCGGAATGATGCACTTGATGGACCACGAGAAGGTG 1017
Query 1058 AGCGAAGAACTGGAGAAACTTAGGAACACAGAAGGCCTCGATGTCCAACTGAGCTACGAT 1117
||||||||||| |||||| ||||| ||||||||||||||||||||||| |||| ||||||
Sbjct 1018 AGCGAAGAACTAGAGAAAATTAGGGACACAGAAGGCCTCGATGTCCAATTGAGTTACGAT 1077
Query 1118 GGTCTTCGTGTACCAATCTCAATTTAACTCGGTTTATTCCT-TTTTT 1163
||||||||||| ||||||||||||||||||||||||||| | |||||
Sbjct 1078 GGTCTTCGTGTTCCAATCTCAATTTAACTCGGTTTATTCGTATTTTT 1124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47272417080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5