BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13820.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929147 jgi|Araly1|929147|scaffold_301604.1 1528 0.0
Ahg925254 jgi|Araly1|925254|scaffold_200815.1 76.8 3e-13
Ahg318595 jgi|Araly1|318595|fgenesh1_pm.C_scaffold_3001611 52.8 6e-06
> Ahg929147 jgi|Araly1|929147|scaffold_301604.1
Length=1290
Score = 1528 bits (827), Expect = 0.0
Identities = 1136/1278 (89%), Gaps = 49/1278 (4%)
Strand=Plus/Plus
Query 1 ATGACGACGATGTCTAATCTCCCTGC-AGAGGTTTTGG-A-AG-AGATTCTCTCAAGGAC 56
||| |||||||| ||||||| || || ||||||||||| | || |||||||||| ||| |
Sbjct 25 ATGCCGACGATGCCTAATCTTCC-GCTAGAGGTTTTGGAAGAGAAGATTCTCTCTAGGGC 83
Query 57 TCCGGTTACATCTCTGAGGACAATGCGATCTACTTGCAAAAAGTGGAACAATCTCTCAAA 116
||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 84 TCCGGTTACATTTCTGAGGGCAATGCGATCTACTTGCAAAAAGTGGAACAATTTCTCAAA 143
Query 117 AAAGAAGATTATTCCTGAAGCTGCAAGGAAGCAGCAAGGTTTAATGTTGATTAAAAAGAA 176
| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 144 AGAGAAGATTATTCCCGAAGCTGCAAGGAAGCAGCAAGGTTTAATGTTGATCAAAAACAA 203
Query 177 AATCTGTTCCTTGAGTTTCAGTCTCCATGAAATTCACAAGGATGACTACGTCGTTCCGTG 236
||||||||||||||||||||| |||| | ||| ||||||||||||| ||||||||||
Sbjct 204 CATCTGTTCCTTGAGTTTCAGTTTCCAAGGAATCCACAAGGATGACTTTGTCGTTCCGT- 262
Query 237 C-ATTAATCAGGTCGATATTCCTCG-CAACATAGAA-GTAGAGAAAATCTTTCACTGTGA 293
| || |||||||| |||||||| | | |||| || ||||| |||||||||||||||||
Sbjct 263 CGATAAATCAGGTAAATATTCCT-GACCACAT-CAAGGTAGATAAAATCTTTCACTGTGA 320
Query 294 CGGCATATTGTTATGCGTCATAGAGGACAACTGTAGTCTTTTGGTATGGAATCCATATCT 353
||||||||| ||||| || |||||| | |||| ||| ||| | ||||||||||| ||| |
Sbjct 321 CGGCATATTATTATGTGTTATAGAGAAAAACTCTAGCCTTGTAGTATGGAATCCCTATTT 380
Query 354 AGGGCAAACGAGGAGGATC---G-AAGTAA-G-T-TC--C--G-ATG--CCG-ACATGA- 397
||||||||||||||| ||| | ||||| | | | | | ||| | | | ||
Sbjct 381 AGGGCAAACGAGGAGAATCAAAGTCAGTAATGATCCCGACAGGAATGAAAAGTATAGGAG 440
Query 398 A--TGATAGGTATGCTCTTGGTTACGACAACAACAACAGTAGCCACAAAATCTTGAGGAT 455
| ||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 441 ATGTGATATGTATGCTCTTGGTTACGACAACAACAACCGTAACCACAAAATCTTGAGGAT 500
Query 456 TAAGAAAGATTTTAAGAACAGCGACGGTTTAGGATACGAAATCTACAGATTCGCGTCGAA 515
|| ||||||||||| | |||| |||||||||||||||||||||||||||||||| || ||
Sbjct 501 TATGAAAGATTTTAGGCACAGTGACGGTTTAGGATACGAAATCTACAGATTCGCATCAAA 560
Query 516 TTCATGGAGTTTGCTTGATGAGGAAGTGATGAAACCAGAGTGGGATGTATGGTCTGTTCA 575
|||||||||||||||||||||||||||||||||||| || ||| |||||||||||| |||
Sbjct 561 TTCATGGAGTTTGCTTGATGAGGAAGTGATGAAACCCGACTGGAATGTATGGTCTGCTCA 620
Query 576 ACGAAGCTCCGTGTCTTTGAAGGGAAATACGTATTTCTTACTTCAAGGGAATGATTATGA 635
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 621 ACGAAGCTCCGTGTCTTTGAAGGGAAATACTTATTTCTTTCTTCAAGGGAATGATTATG- 679
Query 636 TGACCAAGAGGACGAAGAGGAGGAAGATGACGAAGAGTACGAAGATGACGACGACGTCCT 695
| || | |||||||| ||||||| |||||||||||||||||||||| | | |
Sbjct 680 -G-----GA--ATGAAGAGGACGAAGATGCCGAAGAGTACGAAGATGACGAC-A--TAGT 728
Query 696 GCCGAAAGATAATTTTTTGCTCTGTTTTGATTATACAACAGAGAGATTTGGTCCGCGTCT 755
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 729 GCCGAAAGATAATTTTTTGCTCTGTTTCGATTATACAACAGAGAGCTTTGGTCCGCGTCT 788
Query 756 GCTTCTACCGTTTAACCCTCATGTTGAAGAGACTGTGGCTTTATCTTGTATAGGAGAAGA 815
|||||||||||||||||||||||||||||||| ||||||||||| ||| | ||| ||||
Sbjct 789 ACTTCTACCGTTTAACCCTCATGTTGAAGAGACCGTGGCTTTATCATGTGTTGGAAAAGA 848
Query 816 GCGGCTCG-TAATGCTATATCAAAGCTTCAAGACATATAAG-GGAATAGAGATTTGGGTT 873
|||||||| | |||||||||||||||| |||||||| | || | |||||||| |||||
Sbjct 849 GCGGCTCGCT-ATGCTATATCAAAGCTCCAAGACATCTGAGTCG-ATAGAGATATGGGTA 906
Query 874 ACAGACAAGATTGATCCGAAAGCGGTGTCGTGGAGCAAGTTTCTGAAAGTGGATATCACA 933
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 ACAGATAAGATTGATCCAAAAGCGGTGTCGTGGAGCAAGTTTCTGAAAGTGGATATCACA 966
Query 934 CCACTCACTGGTTTTCCGGTTGACTTTTACGCTGATAGTTTCGTCATTGACGAGGAGAAG 993
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 967 CCACTCACTGGTTTTCCGGTTGACATTTACGCTGATAGTTTCTTCATTGACGAGGAGAAG 1026
Query 994 AAAGTTGCTGCGGTTTTCGATATACATTGTAGCTACCAAAAAGCTCACATCATTGGAGAA 1053
||||||||||||||| ||||| |||||| | |||||||||||||||||||||||||||||
Sbjct 1027 AAAGTTGCTGCGGTTGTCGATGTACATTATTGCTACCAAAAAGCTCACATCATTGGAGAA 1086
Query 1054 GATGGATACCTGAAATGTGTGAATATGGGAAGAGCTTCGGATGTTGGAAATGGTCAGCCA 1113
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1087 GATGGATACCTGAAATGTGTGAATATGGGAAGAGCTCCGGATGTTGGAAATGGTCAGCCA 1146
Query 1114 CTTGTGTTCTCTTCTTATGTTCCAAGTTTAGTGAAAGTTCCTGTcaagcaaccaaagggt 1173
||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||
Sbjct 1147 CTTGTGTTCTCTTCTTATGTTCCAAGTTTGGTGAAAGTGCCTATCAAGCAACCAAAGGGT 1206
Query 1174 aaaagaaaaggtaga--tcttctgaaaccaaaagcaacaa-gaacaaaaaaggaagaaag 1230
||||||||||||||| ||| | ||||||||||||| || |||||||||||||||||||
Sbjct 1207 AAAAGAAAAGGTAGAGATCTAATAAAACCAAAAGCAA-AACGAACAAAAAAGGAAGAAAG 1265
Query 1231 attaagaTTATTGGTTAA 1248
|| |||||||||||||||
Sbjct 1266 ATAAAGATTATTGGTTAA 1283
> Ahg925254 jgi|Araly1|925254|scaffold_200815.1
Length=1202
Score = 76.8 bits (41), Expect = 3e-13
Identities = 57/65 (88%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 1025 GCTACCAAAAAGCTCACATCATTGGAGAAGATGGATACCTGAAATGTGTGAATATGGGAA 1084
||||||||| |||||||||||||||||||||||||||| |||||| ||| | ||| ||
Sbjct 964 GCTACCAAACAGCTCACATCATTGGAGAAGATGGATACTTGAAATCTGTTACTATCAGAG 1023
Query 1085 GAGCT 1089
|||||
Sbjct 1024 GAGCT 1028
> Ahg318595 jgi|Araly1|318595|fgenesh1_pm.C_scaffold_3001611
Length=1002
Score = 52.8 bits (28), Expect = 6e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 719 GTTTTGATTATACAACAGAGAGATTTGG 746
||||||||||||||||||||||||||||
Sbjct 515 GTTTTGATTATACAACAGAGAGATTTGG 542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5