BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13825.1
Length=859
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478785 jgi|Araly1|478785|fgenesh2_kg.3__1486__AT3G13825.1 874 0.0
Ahg929120 jgi|Araly1|929120|scaffold_301577.1 76.8 2e-13
> Ahg478785 jgi|Araly1|478785|fgenesh2_kg.3__1486__AT3G13825.1
Length=764
Score = 874 bits (473), Expect = 0.0
Identities = 611/676 (90%), Gaps = 15/676 (2%)
Strand=Plus/Plus
Query 1 ATGACGACTTTGTCCAATCTTTCAGTAGATTTGGTGGGAGAGATATTCTCTAGAGTTCCA 60
||||||||||||||| |||||| ||||||||||||||| |||||||||||||| ||||||
Sbjct 1 ATGACGACTTTGTCCGATCTTTTAGTAGATTTGGTGGGTGAGATATTCTCTAGGGTTCCA 60
Query 61 TTGATATCTCTGAGTGAAGTGCGATGTACTTGTACAACGTGGAACACTTTATCCTGGAAC 120
|||||||||||||| | |||||||| |||||||| |||||||||| ||||||||||||||
Sbjct 61 TTGATATCTCTGAGCGCAGTGCGATATACTTGTAAAACGTGGAACGCTTTATCCTGGAAC 120
Query 121 ATTTTGTCGGAAAATTATGTTTTTGGTAAAGCAG-ATACAAGTAAGCAATTTCTAGGTTT 179
|||| || |||||| || ||||||||| ||||| | || |||||||| |||||||| ||
Sbjct 121 GTTTTATCCGAAAATCATATTTTTGGTATAGCAGCA-ACTAGTAAGCAGTTTCTAGGGTT 179
Query 180 CGTAGTAATGAATT-CTAAGGTTTGTTCCCTGAGACTTGATCTCCAAGGAATCCACAACA 238
|||| || || ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGTAATAGTGGATTAC-AAGGTTTGTTCCCTGAGACTTGATCTCCAAGGAATCCACAACA 238
Query 239 ACGATTTCGTTGATCCATCTTTAAAGGAAATA-A-ATATAGTTGATCAATACGATATATC 296
|||||||||||||||||||| ||||||||||| | ||||| || ||||| |||| |||||
Sbjct 239 ACGATTTCGTTGATCCATCTATAAAGGAAATACAGATATACTTCATCAACACGAGATATC 298
Query 297 TAATATATTTCACTGTGACGGCTTATTGTTATGCGTCAGGTGGATCCAACCAAGAAGCAA 356
|||||| |||||||| || |||||||||||||| |||||||||||| |||||||||||||
Sbjct 299 TAATATCTTTCACTGCGATGGCTTATTGTTATGTGTCAGGTGGATCGAACCAAGAAGCAA 358
Query 357 ATACCATAAGTTCCACAGATTAGACATGTATGCTTTCGGTTACGACAAACAACAACAAGA 416
|||||| || |||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 359 ATACCAAAAATTCCACAGATTAGACATGTATGCTTTCGGTTACGACAA-CAACAA---GA 414
Query 417 ACCGTAACCACAAATTCTTGAGGAAGTTTTTGGATGATGATGAATACAACAAAAGCAGTA 476
|||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 415 ACCGTAACCACAAAATCTTGAGGAAGTTTTTGGATGATGATGACTACAACGAAAGCAGTC 474
Query 477 AAATAAATTTTCCTTCCAAGTTCGAGATATATTATTTTAACTCTGATTCATGGAGAGTTC 536
||| |||| |||||| |||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 475 AAAGAAATATTCCTTTCAAGTTCGAGATGTATTATTTTAACTCTGAATCATGGAGAGTTC 534
Query 537 TTGATGTCAATCCCGACTGTGATTTA-GAAAGAGATGTGTCTTTGAAGGGACATACTTAT 595
|||||||||||||||||||||||||| ||| ||| ||||||||||||||| ||||||||
Sbjct 535 TTGATGTCAATCCCGACTGTGATTTACGAA-GAGGCGTGTCTTTGAAGGGAAATACTTAT 593
Query 596 TATTATGCTCGACAAA-AA--GAGGTCGGAGAGCCAGTTTCAAATCGTATTGGTTTTTTA 652
| |||||||||||||| || ||||| ||||| |||||||||||| |||||| |||||||
Sbjct 594 TCTTATGCTCGACAAATAATAGAGGTTGGAGATCCAGTTTCAAATAGTATTGATTTTTTA 653
Query 653 CTCTGTTTTGATTTTA 668
||||||||||||||||
Sbjct 654 CTCTGTTTTGATTTTA 669
> Ahg929120 jgi|Araly1|929120|scaffold_301577.1
Length=1237
Score = 76.8 bits (41), Expect = 2e-13
Identities = 47/50 (94%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 682 TGTGACTCTATCTTGTATCAGAGACGAGCAGCTCGCTGTGTTATATCAAC 731
|||| ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 761 TGTGTCTCTATCTTGTGTTAGAGACGAGCAGCTCGCTGTGTTATATCAAC 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31794512778
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5