BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13840.1
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478786 jgi|Araly1|478786|fgenesh2_kg.3__1487__AT3G13840.1 2449 0.0
> Ahg478786 jgi|Araly1|478786|fgenesh2_kg.3__1487__AT3G13840.1
Length=1533
Score = 2449 bits (1326), Expect = 0.0
Identities = 1468/1537 (96%), Gaps = 8/1537 (1%)
Strand=Plus/Plus
Query 1 ATGTTGTTGGAAGAAACAGAACCACCAAACCAGACTCTAGATCATGTCCTAAGCTGGCTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTGTTGGAAGAAACAGAACCACCAAACCAGACTCTAGATCATGTCCTAAGCTGGCTT 60
Query 61 GAGGATTCTGTGTCCTTATCCCCATTACCAGGATTTGATGATTCTTATTTGCTCCACGAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGGATTCTGTGTCCTTATCCCCATTACCAGGATTTGATGATTCTTATTTGCTCCACGAG 120
Query 121 TTTGATGGGTCTCAAACGTGGGAATGGGATCAGACTCAAGATCCGGAGCATGGTTTTATT 180
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 TTTGATGGGACTCAAACGTGGGAATGGGATCAGACTCAAGATCCGGAACATGGTTTTATT 180
Query 181 CAAAGCTATAGTCAAGATCTTAGTGCAGCATATGTTGGTTGTGAAGCAACTAACCTGGAA 240
||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||
Sbjct 181 CAAAGCTATAGTCAAGATCTTAGTGCA---TATGTGGGTTTTGAAGCAACTAACCTGGAA 237
Query 241 GTGGTAACAGAAGCTCCATCCATTGATTTGGATCTTCCACCTGAAATTCAGCAACCAAAC 300
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||
Sbjct 238 GTGGTAACAGAAGCTCCATCCATTGATTTGGATCCTCCACCTGAACTTCAGCAACAAAAT 297
Query 301 GATCAGTCCAGGAAAAGGAGCCACGACGGGTTTCTCGAGGCACAACAGGTGAAAAAATCG 360
|||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 298 GATCAGTCCAGGAAAAGGAGCCGCGACGGGGTTATCGAGGCACAACAGGTGAAAAAATCG 357
Query 361 GCAAGGAGCAAGAGAAAAGCAATCAAGTCTAGTGAGAAGAGCTCCAAAGATGGTAACAAG 420
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 358 GCAAGGAGCAAGAGAAAAGCAATCAAGTCTAGTGAGAAGAGCAGCAAAGATGGTAACAAG 417
Query 421 GAAGGGAGATGGGCAGAGAAGTTGCTTAACCCTTGTGCCTTGGCCATTACGGCAAGTAAC 480
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 418 GAAGGTAGATGGGCAGAGAAATTGCTTAACCCTTGTGCCTTGGCCATTACGGCAAGTAAC 477
Query 481 TCATCAAGGGTTCAACATTACCTTTGTGTTCTCTCTGAACTGGCCTCTTCTTCTGGTGAT 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 478 TCATCAAGGGTTCAACATTACCTTTGTGTTCTCTCTGAACTGGCCTCTTCTTCTGGCGAT 537
Query 541 GCTAATCGTCGGCTTGCAGCTTTTGGTCTTCGGGCTTTGCAACATCATCTTTCCTCATC- 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GCTAATCGTCGGCTTGCAGCTTTTGGTCTTCGGGCTTTGCAACATCATCTTTCCTCATCA 597
Query 600 -C-TCTGTGTCATCATCCTTTTGGCCTGTTTTTACTTTTGCTTCAGCGGAAGTGAAGATG 657
| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 598 TCCTCTGTGTCATCATCTTTTTGGCCTGTTTTTACTTTTGCTTCAGCAGAAGTGAAGATG 657
Query 658 TTTCAAAAGACTCTGCTTAAGTTCTACGAGGTAAGCCCTTGGTTTGCTTTGCCTAACAAC 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 658 TTTCAAAAGACTCTGCTTAAGTTCTACGAGGTAAGCCCTTGGTTTGCTTTGCCTAATAAC 717
Query 718 ATGGCAAACTCAGCTATCCTGCAGATTTTAGCACAGGATCCCAAAGATAAAAAGGATCTT 777
||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 718 ATGGCAAACTCAGCTATCCTGCAGATTCTAGCACAGGATCCCATATATAAAAAGGATCTT 777
Query 778 CATATTATTGATATTGGTGTTTCTCACGGTATGCAATGGCCCACTTTGTTGGAGGCTCTG 837
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CATATTCTTGATATTGGTGTTTCTCACGGTATGCAATGGCCCACTTTGTTGGAGGCTCTG 837
Query 838 AGCTGCAGACTAGAAGGACCTCCTCCTCGTGTTCGAATAACCGTTATATCAGATCTAACC 897
|||||||||| |||||||||||||||| ||||||||||||||||| |||| |||||||||
Sbjct 838 AGCTGCAGACCAGAAGGACCTCCTCCTTGTGTTCGAATAACCGTTGTATCTGATCTAACC 897
Query 898 GCAGACATACCTTTCTCTGTTGGTCCACCAGGTTACAATTATGGTTCTCAACTCCTAGGC 957
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 898 GCAGACATACCTTTCTCTGTTGGTCCACCAGCTTACAATTATGGTTCTCAACTCCTTGGC 957
Query 958 TTTGCTCGGTCTCTCAAGATCAACCTTCAGATTAGTGTACTTGACAAGTTACAACTCATT 1017
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 958 TTTGCTCGGTCTCTCAAGATCAACCTTCAGATTAGTGTACTTGACAAGTTCCAGCTCATT 1017
Query 1018 GATACCTCACCTCACGAGAACTTAATCGTGTGTGCTCAGTTTAGGCTGCATCACCTGAAG 1077
||||||||||||||||||| |||||| || |||| ||||||||||||||||| |||||||
Sbjct 1018 GATACCTCACCTCACGAGACCTTAATAGTCTGTGTTCAGTTTAGGCTGCATCCCCTGAAG 1077
Query 1078 CATAGCATCAATGATGAGAGAGGCGAGACTTTGAAAGCAGTGAGAAGTTTAAGGCCAAAA 1137
||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1078 CATAGCATCCCTGATGAGAGAGGCGAGACTTTGAAAGCACTGAGAAGTTTGAGGCCAAAA 1137
Query 1138 GGAGTGGTTC-TTTGTGAGAACAATGGAGAATGCAGTAGTAGTGCGGACTTTGCAGCAGG 1196
|||||| ||| ||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1138 GGAGTG-TTCCTTTGTGAGAACAATGGAGAATGCAGTACTAGTGTGGACTTTGCAGCAGG 1196
Query 1197 ATTCTCGAAGAAACTGGAGTATGTATGGAAGTTTCTGGATTCAACAAGCTCGGGATTTAA 1256
||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1197 ATTCTCGAAGAAACTTGAGTATCTATGGAAGTTTCTGGATTCAACAAGCTCAGGATTTAA 1256
Query 1257 AGAAGAGAATAGCGAAGAGAGAAAACTAATGGAAGGAGAGGCAACAAAGGTGTTGATGAA 1316
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AGAAGAGAATAGTGAAGAGAGAAAACTAATGGAAGGAGAGGCAACAAAGGTGTTGATGAA 1316
Query 1317 TGCAGGAGATATGAATGAAGGAAAAGAGAAATGGTATGAGAGGATGAGAGAAGCTGGttt 1376
| ||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1317 TACAGGAGAGATGAATGAAGGAAAAGATAAATGGTATGAAAGGATGAGAGAAGCTGGTTT 1376
Query 1377 ttttGTAGAAGCATTTGAAGAAGATGCAGTTGATGGAGCCAAATCCTTACTAAGAAAGTA 1436
| | ||||||||||| |||||||||| |||||||||||||||| ||||| ||||||||
Sbjct 1377 TGCCGCAGAAGCATTTGGAGAAGATGCAATTGATGGAGCCAAATCTTTACTGAGAAAGTA 1436
Query 1437 TGACAACAATTGGGAAATAAGAATGGAAGATGGAGATACCTTTGCTGGATTAATGTGGAA 1496
||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1437 TGACAACAACTGGGAAGTAAGAATGGAAGATGGAGATACCTATGCTGGATTAATGTGGAA 1496
Query 1497 AGGAGAGGCAGTTTCCTTTTGTTCATTGTGGAAGTAG 1533
|||||||||||||||||||||||||||||||||||||
Sbjct 1497 AGGAGAGGCAGTTTCCTTTTGTTCATTGTGGAAGTAG 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57401999215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5