BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G13845.1

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478787 jgi|Araly1|478787|fgenesh2_kg.3__1488__AT3G13845.1         562    9e-160


> Ahg478787 jgi|Araly1|478787|fgenesh2_kg.3__1488__AT3G13845.1
Length=429

 Score =  562 bits (304),  Expect = 9e-160
 Identities = 406/451 (90%), Gaps = 24/451 (5%)
 Strand=Plus/Plus

Query  18   TTCTGAGAAGGAGAGAAGTTGTCGCCGATA-CCAAGAGAGGAACAAGCGCATTGACGGAT  76
            |||||||||||||||||||||||||||||| | |||||| ||| ||| ||||||||| ||
Sbjct  1    TTCTGAGAAGGAGAGAAGTTGTCGCCGATAGCAAAGAGACGAAGAAGGGCATTGACGTAT  60

Query  77   TAGAC-aaaaaaaTGTCGGTGAAACCCACAGTTGCTTTGAGAGGTATCTTAGTAGGTGGA  135
            |||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  61   TAGACTGAAAAAATGTCGGTGAAACCCACAGTCGCTTTGAGAGGTATCTTAGTAGGTGGA  120

Query  136  GTGGCGATATTTGCAAAAGTTGCGGCTGCAATGAAAGCAGCTGGAGGTGTTAAGCTTGGT  195
            ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct  121  GTGGCTATATTTGCAAAAGTCGCGGCTGCAATGAAAGCAGCTGGTGGTGTTAAGCTTGGT  180

Query  196  GCAGCTGCTACAGCTATGACCGTGGCTGCAACCGCTGCTGTTAGTGGAGGTTCTAAGCAA  255
            ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct  181  GCAGCTGCTACAGCTATGACCGTGGCTGCAACCGCTGCTGTGAGTGGAGGATCTAAGCAA  240

Query  256  GATCAAAAGCAAGATGCTTCCAAGGCACCACCACCTTCTAAATAAGAAGTATTGTTCATG  315
            |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct  241  GATCAAAAGCAAGATGCTTCCAAGGCACCACCACCTTCTAAATAAGTAGTATTATTCATG  300

Query  316  TAATTCTTCCTTACTGAATCCAATAACAAGAGAGAGACaaaaaaaaaCTTCATCAAAGAC  375
            ||||||||||||   |   |   |     || | | | ||||||   || ||| ||||||
Sbjct  301  TAATTCTTCCTT---G---C---T-----GA-A-A-A-AAAAAA---CTCCATGAAAGAC  339

Query  376  CATTCTAGTTTTTCAAAGGTTCTATGGAGTTAAAATGTAATGTTGTTGAAAGTGTTAAAT  435
            || ||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||| 
Sbjct  340  CACTCTAGTTTTTCAAGGGTTCTATGGAGTTAAA-TGTAATGTTATTGAAAGTGTTAAAG  398

Query  436  CTGTAGTTTTCTTTTGTAATAACTTCTCTAT  466
            ||||||||||||||||||||||||||| |||
Sbjct  399  CTGTAGTTTTCTTTTGTAATAACTTCTTTAT  429



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18352838309


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5