BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13850.1
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478788 jgi|Araly1|478788|fgenesh2_kg.3__1489__AT3G13850.1 1271 0.0
> Ahg478788 jgi|Araly1|478788|fgenesh2_kg.3__1489__AT3G13850.1
Length=810
Score = 1271 bits (688), Expect = 0.0
Identities = 774/814 (95%), Gaps = 11/814 (1%)
Strand=Plus/Plus
Query 3 ATGCCCTCAGGCAAACCTTCTTCTGTCTTCCCTTTACATCCCAAACCTACACCATTAAAA 62
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1 ATGCCCTCAGGCAAACCTTCTTCTGTATTCCCTTTACATCCCAAACCAACACCATTAAAA 60
Query 63 CCTTCTAGCAGCACCAGCAGCAGCAACAACAACAGCACAAACCAAGCCTGCGCCGCCTGC 122
||||||||||||| || ||||| || ||| | ||||||||||||||||||||||||||||
Sbjct 61 CCTTCTAGCAGCAGCACCAGCAACACCAATAGCAGCACAAACCAAGCCTGCGCCGCCTGC 120
Query 123 AAATACCAACGCAGGAAATGCGCTCCCGATTGTCTTCTTGCTCCTTATTTCCCTCACGAC 182
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 AAATACCAACGCAGGAAATGCGCTCCCGATTGTCTTCTCGCTCCTTATTTCCCTCACGAC 180
Query 183 CGTCACCGCCAATTCCTTAACGCGCATAAGCTCTTTGGAGTCAGCAACATCACCAAGATC 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTCACCGCCAATTCCTTAACGCGCATAAGCTCTTTGGAGTCAGCAACATCACCAAGATC 240
Query 243 ATTAAATCCCTTACCCCTCCAGAGAAAGACGCAGCTATGCATACAATCATGTTTCAGTCC 302
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 241 ATCAAATCCCTTACCCCTCCTGAGAAAGACGCAGCTATGCATACAATCATGTTTCAATCC 300
Query 303 GATGCTCGTGCCAATGATCCCGTTGATGGATGCTATGGCATCATAAAAAAGCTTCAATAC 362
||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 301 GATGCTCGTGCCAGTGATCCTGTTGATGGATGCTATGGCATCATAAGAAAGCTTCAATAC 360
Query 363 CAGATCGAATACACAAGAAACGAATTGGAGATTGTTCTTCAGCAATTGGCTATGTTCCGT 422
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAGATCGAATACACCAGAAACGAATTGGAGATTGTTCTTCAGCAATTGGCTATGTTCCGT 420
Query 423 GACCGTGCTCATCAACATCATCATCAAGAACCGCATATCCAGATGCAAGAACAAGAGGAT 482
|||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||
Sbjct 421 GACCGTGCTCATCA---TCATCATCAAGAACCGCAAATCCAGATGCAAGAACCAGAGGAT 477
Query 483 CTCTCGAGTTTTTCGAGTTCTTGTGATCTAAACAACAACAATTCGATTCCTTACAATTAC 542
||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 478 CTCTCAAGTTTTTCGAGTTCTTGTGATATAAACAACAACAACTCGATTCCTTACAATTAC 537
Query 543 CCTCTGAATCACATTCAAGAACCAAATCAACAACAA------TATTGTTCTTCCGGTAAT 596
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 538 GCTCTGAATCACATTCAAGAACCAAATCAACAACAACAACAATATTGTTCTTCCGGTAAT 597
Query 597 AACTTCAGTGGGTTACAAGAAGACATGTGGTGTCTTCAACTTCAAGATTCATCAACGATA 656
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 598 AACTTCAATGGGTTACAAGAAGACATGTGGTGTCTTCAACTTCAAGATTCATCAACGACA 657
Query 657 GTGAATATGAAGGCTGGTTTCATTGATGAATGTGAAGACGTAAAGCCTGTAGAAGAGGTT 716
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 658 GTGAATATGAAGGCTGGTTTCATTGATGAATGTGAAGACGTTAAGCCTGTGGAAGAGGTT 717
Query 717 TCTAGCGAACGACACGAGTTTGAGCCTCATGAAGCTTTCGTTGAACAACGGAAACTCGAC 776
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 718 TCTAGCGAAAGACACGAGTTCGAGCCTCATGAAGCTTTCGTTGAACAACGGAAACTCGAC 777
Query 777 TTGCCTTCC-GCACAATACATCATTTCTTCTTAG 809
|||||| || ||||||| ||||||||||||||||
Sbjct 778 TTGCCT-CCAGCACAATTCATCATTTCTTCTTAG 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41477733696
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5