BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13870.1
Length=2910
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478791 jgi|Araly1|478791|fgenesh2_kg.3__1492__AT3G13870.1 4778 0.0
Ahg908907 jgi|Araly1|908907|Al_scaffold_0002_1988 1035 0.0
> Ahg478791 jgi|Araly1|478791|fgenesh2_kg.3__1492__AT3G13870.1
Length=2877
Score = 4778 bits (2587), Expect = 0.0
Identities = 2786/2882 (97%), Gaps = 14/2882 (0%)
Strand=Plus/Plus
Query 1 TATTTCTTTTGTCAAATTAGAGAGAAGCTCTTATGACCTTAGGAGAAGCAGTCGTCAAAG 60
||||||||||||||||| ||| |||||| |||||||||||| |||||||||||||||| |
Sbjct 1 TATTTCTTTTGTCAAATAAGA-AGAAGCACTTATGACCTTACGAGAAGCAGTCGTCAAGG 59
Query 61 CACCGGTGCATCAATAACGAGCTCGAGCCTAGAGATCTCTGTCCCATTCTCTTCGTCATT 120
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 60 CACCGGTGCATCAATAGCGAGCTCGAGCCTAGAGATCTCTGTACCATTCTCTTCTTCATT 119
Query 121 CATCACTCTATCTGCGTTTCGTTGAGCGATAATGGATGCCGCTTGCTCTACCCAGCTTAT 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 CATCACTCTATCTGCGTTTCGTTGAGAGATAATGGATGCCGCTTGCTCTACCCAGCTTAT 179
Query 181 CGATGGGGATGGTGTCTTTAATGTTTCTGGGGTTGATCATTTCATCAAGGAGGTTAAATT 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGATGGAGATGGTGTCTTTAATGTTTCTGGGGTTGATCATTTCATCAAGGAGGTTAAATT 239
Query 241 GGACGAATGTGGTCTTTCATACGCGGTTGTCTCGATTATGGGTCCACAAAGTAGTGGGAA 300
||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 240 GGAAGAATGTGGTCTTTCATATGCGGTTGTCTCGATTATGGGTCCACAAAGTAGCGGGAA 299
Query 301 GAGTACGCTCTTGAATCATTTGTTTGGAACCAACTTTAGAGAAATGGATGCATTTAGAGG 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAGTACACTCTTGAATCATTTGTTTGGAACCAACTTTAGAGAAATGGATGCATTTAGAGG 359
Query 361 AAGGTCTCAGACGACTAAGGGAATTTGGATTGCTAGATGCGCTGGTATTGAGCCTTGCAC 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAGGTCTCAGACAACTAAGGGAATTTGGATTGCTAGATGCGCTGGTATTGAGCCTTGCAC 419
Query 421 CGTTGTGATGGATTTAGAGGGTACCGATGGGAGAGAGCGTGGTGAGGATGATACTGCTTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGTTGTGATGGATTTAGAGGGTACCGATGGGAGAGAGCGTGGTGAGGATGATACTGCTTT 479
Query 481 CGAGAAACAGAGTGCTCTTTTTGCACTTGCAGTCTCAGACATAGTTCTTATAAACATGTG 540
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 480 CGAGAAACAGAGTGCTCTTTTTGCACTTGCTGTCTCAGACATAGTTCTTATCAACATGTG 539
Query 541 GTGTCATGATATTGGTCGGGAACAAGCAGCAAATAAACCTCTTTTAAAGACTGTGTTCCA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTGTCATGATATTGGTCGGGAACAAGCAGCAAATAAACCTCTTTTAAAGACTGTGTTCCA 599
Query 601 GGTTATGATGCGGTTGTTTAGTCCGCGGAAGACAACTTTGATGTTTGTTATAAGAGATAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGTTATGATGCGGTTGTTTAGTCCGCGGAAGACAACTTTGATGTTTGTTATAAGAGATAA 659
Query 661 AACACGGACGCCACTGGAAAATTTAGAACCAGTGCTGAGGGAAGACATTCAAAAGATATG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AACACGGACGCCACTGGAAAATTTAGAACCAGTGCTGAGGGAAGACATTCAAAAGATATG 719
Query 721 GGATTCAGTTCCCAAGCCTCAGGCCCACAAAGAAACTCCACTTAGCGATTTCTTCAATGT 780
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 720 GGATTCAGTCCCCAAGCCTCAGGCACACAAAGAAACTCCACTTAGTGATTTCTTCAATGT 779
Query 781 TGAAGTAGTTGCTCTCTCGAGTTATGAAGAAAAAGAAGAGCAATTCAAAGAGCAGGTCTA 840
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 780 TGAAGTAGTTGCTCTCTCGAGTTATGAAGAAAAGGAAGAACAGTTCAAAGAGCAGGTCTA 839
Query 841 CAATTTGAGACAACGGTTCTTCCAATCTGTCGCACCTGGCGGGCTTGCTGGTGATCGACG 900
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 TAATTTGAGACAACGGTTCTTCCAATCTGTTGCACCTGGCGGGCTTGCTGGTGATCGACG 899
Query 901 AGGAGTTGTCCCTGCCAATGCTTTTGCTTTTAGTGCAAAACAGATGTGGCAAGTCATCAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 900 AGGAGTTGTCCCTGCCAATGCTTTTGCTTTTAGTGCAAAACAGATGTGGCAAGTCATTAA 959
Query 961 AGACAACAAAGACTTGGATCTTCCAGCACACAAGGTCATGGTAGCAACTGTGCGATGTGA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 960 AGACAACAAAGACTTGGATCTTCCAGCACACAAGGTCATGGTAGCAACTGTGCGATGCGA 1019
Query 1021 GGAAATTGCCAATGAAAAATTCTCTAGTTTTATCGCGAATGAGAATTGGCGCGAGTTGGA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GGAAATTGCCAATGAAAAATTCTCTAGTTTTATCGCGAATGAGAATTGGCGCGAGTTGGA 1079
Query 1081 AGAGGCTGTACAGTCTGGTCCTGTTTCCGGATTTGGAAGAAAGCTGAGCTCAATTCTCCA 1140
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1080 AGAGGCTGTACAGTCTGGTCCTGTTTCCGGATTTGGAAGAAAGCTGAACTCAATTCTCCA 1139
Query 1141 AGCAAGCTTATCAGAGTATGACACAGAAGCGACATACTTTGAAGAAAGTGTTAGATCATC 1200
| | |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1140 ATCCAGCTTATCAGAGTATGACACAGAAGCTACATACTTTGAAGAAAGTGTAAGATCATC 1199
Query 1201 CAAGAGGCAACAGCTGCAAGAAAAGTTATTGCAACTTGTTCAACCAACTTTCCAAGACGT 1260
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CAAGAGACAACAGCTGCAAGAAAAGTTATTGCAACTTGTTCAACCAACTTTCCAAGACGT 1259
Query 1261 GCTTGGACATTTGAGGGCTGGAGCACTTGAAAACTTCAAGAATGCTTTTGAGAAGGCCTT 1320
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GCTTGGACATTTGAGATCTGGAGCACTTGAAAACTTCAAGAATGCTTTTGAGAAGGCCTT 1319
Query 1321 GGATGCTGGAGAAGGGTTTTCATCATCTGCGAAATCCTGCGCTCAGTCATGCATATCTAA 1380
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GAATGCTGGAGAAGGGTTTTCATCATCTGCGAAATCCTGCGCTCAGTCATGCATATCTAA 1379
Query 1381 GTTTGATAAAGGATGTGAAGAGGCTGTTATTGAACAAGCAAAATGGGATACATCTAAAAC 1440
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1380 GTTTGATAAAGGATGTGAAGAGGCTGTTATTGAACAAGCAAATTGGGATACATCTAAAAC 1439
Query 1441 TCGGGAAAAGCTTGAGCGTGATATTGAAGCTCATATCTCTTCTGTCCGTACTGCAAAGTT 1500
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1440 TCGGGAAAAGCTTGAGCGTGATATTGAAGCCCATATCTCTTCTGTCCGTGCTGCAAAGTT 1499
Query 1501 GGCTGAACTGACTACTCTGTATGAGTCAAAACTAAATGTAGCCTTATCTGGACCGGTGGA 1560
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1500 GGCTGAACTGACTACTCTGTATGAGTCAAAACTAAATGTAGCATTATCCGGACCGGTGGA 1559
Query 1561 AGCTCTTCTGGATGGGGCTAATGATGAAACATGGCCAGCAATAAGAAAGCTACTTAGACG 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 AGCTCTTCTGGATGGGGCTAATGATGAAACATGGCCAGCAATAAGAAAGCTACTTAGACG 1619
Query 1621 GGAAGGAGAATTGGCTGTCTATGGTCTCTCCAACGCATTATCTGGTTTCGAAATGGACGA 1680
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1620 GGAAGGAGAATTGGCTGTCTATGGTCTCTCCGACGCATTATCTGGTTTCGAAATGGACGA 1679
Query 1681 AGAAACACGGAGTAAAATGCTTGCTGATCTCGAGAACTATGCACGAGGTATTGTTGAAAC 1740
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1680 AGAAACACGGAGTAAAATGCTTGGTGATCTCGAGAACTATGCACGGGGTATTGTTGAAAC 1739
Query 1741 CAAGGCAAAGGAAGAGGCTGGAAGAGCGATGATGCGCATGAAGGATAGATTTGCTACAAT 1800
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1740 CAAGGCAAAGGAAGAGGCTGGAAGAGTGTTGATGCGCATGAAGGATAGATTTGCTACAAT 1799
Query 1801 CTTCAGCCATGATTCTGATTCAATGCCACGTGTTTGGACTGGAAAGGAGGACATCAGAGC 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 CTTCAGCCATGATTCTGATTCAATGCCACGTGTTTGGACTGGAAAGGAGGACATCAGAGC 1859
Query 1861 AATTACAAAAATGGCTCGTTCTGCGTCCTTGAAGCTGCTGTCTGTTATGGCTGTTATACG 1920
||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1860 AATCACAAAAATGGCTCGTTCTGCATCCTTGAAGCTGCTGTCTGTTATGGCTATTATACG 1919
Query 1921 CTTGGATGATGAACTCGACAATATTGAGAAGACATTGACGCTAGCTCTGTTTAATTCTAC 1980
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1920 CTTGGATGATGAACTCGATAATATTGAGAAGACATTGACGCTCTCTCTGTTTAATTCTAC 1979
Query 1981 GGGCAACAATGCTACTAGCAAGAGCATCAGCACAATTGATTCACTTGCCTCAAGCACTTG 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1980 GGGCAACAATGCTACTAGCAAGAGCATCAGCACAATTGATTCACTTGCCTCAAGCACTTG 2039
Query 2041 GGAGAAGGTTGCACCAGAAAAGACGTTGATCACACCTGTGCAGTGTAAATCACTGTGGAG 2100
|||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2040 GGAGCAGGTTGCACCAGAAAAGACTTTGATCACGCCTGTGCAGTGTAAATCACTGTGGAG 2099
Query 2101 GCAATTTAAGAACGAGACAGAATATACCGTTACACAGGCCATTTCTGCACAGGAAGCTAA 2160
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2100 GCAATTCAAGAACGAGACAGAATATACCGTTACACAGGCCATTTCTGCACAGGAAGCTAA 2159
Query 2161 CCGACGGAATAACAACTGGCTGCCACCTCCATGGGCAATCCTTGCCCTGGTTGTTCTTGG 2220
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2160 CCGACGAAATAACAACTGGCTGCCACCTCCATGGGCAATCCTTGCCCTGGTTGTTCTTGG 2219
Query 2221 ATTTAATGAATTTATGACTCTCTTAAGAAATCCTCTATGGCTCTTAGTTCTATTTGTCGG 2280
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 2220 ATTCAATGAATTTATGACTCTCTTAAGAAATCCTCTATGGCTCTTAGTTCTTTTTGTGGG 2279
Query 2281 ATACCTTGTATCCAAAGCCTTGTGGGTGCAATTAAATATTTCAGGAGAATTCCAAAACGG 2340
||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2280 ATACCTTATTTCCAAAGCCTTGTGGGTGCAATTAAATATTTCAGGAGAATTCCGCAACGG 2339
Query 2341 CGTGCTACCTGGACTTCTCTCTTTGTCAACCAAATTCATTCCAACGGTCATGAACCTCCT 2400
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2340 CGCGCTACCTGGACTTCTCTCCTTGTCAACCAAATTCATTCCAACGGTCATGAACCTCCT 2399
Query 2401 CAAAAAGCTTGCGGAAGAAGGACAAGCACCACCCACAAATAGCAACCAATCAATGAACTC 2460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2400 CAAAAAGCTTGCGGAAGAAGGACAAGCACCACCCACAAATAGCAACCAATCAATGAACTC 2459
Query 2461 TACAGCTCAATCCGAGGTTACAACCAATGGAGAAAGCAGCAGCAGCAG---TAGCTCTGG 2517
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2460 AACAGCTCAATCCGAGGTTACAACCAATGGAGAAAGCAGCAGCAGCAGCAGTAGCTCTGG 2519
Query 2518 TTCATCTCCAGCAAAAAACGTACCCATTGATACAAGTGCATAGAACAAAGAAGTATACAA 2577
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 2520 TTCATCTCCAGCAAAAAACGTACCCATTGATACAAGTGCATAGAAGGAAGAACTATACAA 2579
Query 2578 GCTTAAGCTGTTGTGCTAGCCCACGAAGCTAGAAACTTAAAATTCGTTACCCTTTCAAAA 2637
|||||||||||||||| ||| || ||||||||||||||||||||||||||||||| ||||
Sbjct 2580 GCTTAAGCTGTTGTGCGAGCACAGGAAGCTAGAAACTTAAAATTCGTTACCCTTTAAAAA 2639
Query 2638 AGGTAGCTCTCAGTTTTGGTGTTGATCAGAGAGATTCACCGAGAGCCATATGTTTTATGT 2697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2640 AGGTAGCTCTCAGTTTTGGTGTTGATCAGAGAGATTCACCGAGAGCCATATGTTTTATGT 2699
Query 2698 CTCCGATGGC-ATTGGTTCCCTCTTGCAGGTGTCAAAGTGATCTTGTATGTTCCTAGACT 2756
|||||||||| || |||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 2700 CTCCGATGGCGAT-GGTTCC-TCTTGCAGGTGCCAAAGTGATCTTGTATGTTCGTAGACT 2757
Query 2757 AAGATTCTGATGCAGACaaaaacaaaaaaaCTCATGATTTGTTTG----CGAGTTCTGTA 2812
|||||||||||||||||||| | ||||||||||| ||||| |||| |||||||||||
Sbjct 2758 AAGATTCTGATGCAGACAAACA-AAAAAAACTCAAGATTTATTTGTTTACGAGTTCTGTA 2816
Query 2813 GTGATGTGGTT-ATTGTATCTGATAAAAAGAATGTTACTTGAAGAAAAACCGGTTTTTGA 2871
||||||||||| |||||||||||||||| |||| ||||| || || ||||||||||||||
Sbjct 2817 GTGATGTGGTTTATTGTATCTGATAAAA-GAATATTACTCGAGGAGAAACCGGTTTTTGA 2875
Query 2872 TT 2873
||
Sbjct 2876 TT 2877
> Ahg908907 jgi|Araly1|908907|Al_scaffold_0002_1988
Length=2223
Score = 1035 bits (560), Expect = 0.0
Identities = 1471/1901 (77%), Gaps = 102/1901 (5%)
Strand=Plus/Plus
Query 278 ATGGGTCCACAAAGTAGTGGGAAGAGTACGCTCTTGAATCATTTGTTTGGAACCAACTTT 337
|||||||| ||||| |||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 1 ATGGGTCCTCAAAGCAGTGGGAAGAGTACATTATTGAATCATTTGTTTGGAACAAACTTT 60
Query 338 A-GAGAAATGGATGCATTT-AGAGGAAGGTCTCAGACGACTAAGGGAATTTGGATTGCTA 395
| | || |||||||||||| || |||||||||||||| || || || || ||| |||| |
Sbjct 61 ATG-GAGATGGATGCATTTAAG-GGAAGGTCTCAGACCACAAAAGGTATCTGGCTTGCAA 118
Query 396 GATGCGCTGGTATTGAGCCTTGCACCGTTGTGATGGATTTAGAGGGTACCGATGGGAGAG 455
|||| || ||||| |||||||||||| |||| |||||||| ||||| |||||||| ||||
Sbjct 119 GATGTGCCGGTATAGAGCCTTGCACCCTTGTAATGGATTTGGAGGGCACCGATGGAAGAG 178
Query 456 AGCGTGGTGAGGATGATACTGCTTTCGAGAAACAGAGTGCTCTTTTTGCACTTGC-AGTC 514
|||| || ||||||||||| || ||||| ||||||||||| ||||| || ||||| | ||
Sbjct 179 AGCGAGGAGAGGATGATACGGCATTCGAAAAACAGAGTGCCCTTTTCGCTCTTGCTA-TC 237
Query 515 TCAGACATAGTTCTT-ATAAACATGTGGTGTCATGATATTGGTCGGGAACAAGCAGCAAA 573
|| || || | |||| || |||||||||||||| |||||||| || |||||||| || ||
Sbjct 238 TCGGATATCG-TCTTGATCAACATGTGGTGTCACGATATTGGCCGTGAACAAGCTGCTAA 296
Query 574 TAAACCTCT-TTTAAAGACTGTGTTCCAGGTTATGATGCGGTTGTTTAGTCCGCGGAAGA 632
||||||||| || ||| ||||| || |||||||||||||| ||||||||||| || || |
Sbjct 297 TAAACCTCTCTTGAAA-ACTGTCTTTCAGGTTATGATGCGATTGTTTAGTCCACGTAAAA 355
Query 633 CAACTTTGATGTTTGTTATAAGAGATAAAACACGGACGCCACTGGAAAATTTAGAACCAG 692
|||| || ||||||| ||| |||||||||| |||||||| ||||||||||||| || |
Sbjct 356 CAACAATGTTGTTTGTAATACGAGATAAAACCCGGACGCCGTTGGAAAATTTAGAGCCTG 415
Query 693 TGCTGAGGGAAGACATTCAAAAGATATGGGATTCAGTTCCCAAGCCTCAGGCCCACAAAG 752
|| | || ||||| ||||| |||||||||||||| ||||| |||||| | || ||||| |
Sbjct 416 TGTTAAGAGAAGATATTCAGAAGATATGGGATTCTGTTCCAAAGCCTGAAGCACACAAGG 475
Query 753 AAACTCCACTTAGCGA-TTTCTTCAATGTTGAAGTAGTTGCTCTCTCGAGTTATGAAGAA 811
||||||| || ||||| ||| |||||||||||||| |||||||| || |||||||| ||
Sbjct 476 AAACTCCTCTAAGCGACTTT-TTCAATGTTGAAGTTGTTGCTCTTTCCAGTTATGAGGAG 534
Query 812 AAAGAAGAGCAATTCAAAGAGCAGGTCTAC-AATTTGAGACAACGGTTCTTCCAATCTGT 870
|| ||||| ||||| ||||||||||| | | | |||||||||||||||| | || ||| |
Sbjct 535 AAGGAAGAACAATTTAAAGAGCAGGT-TGCTAGTTTGAGACAACGGTTCATGCATTCTAT 593
Query 871 CGCACCTGGCGGGCTTGCTGGTGATC-GACGAGGAGTTG-TCCCTGCC-AATGCTTTTGC 927
||||| || || |||||||| || | || |||||| || | || ||| | | ||||||
Sbjct 594 TGCACCGGGTGGTCTTGCTGGAGA-CAGAAGAGGAG-TGATTCCAGCCTCA-GGTTTTGC 650
Query 928 TTTTAGTGCAAAACAGATGTGGCA-AGTCATCAAAGACAACAAAGA-CTTGGATCTTCCA 985
||||||||| | || || ||| | |||||||||||| || || || ||| || ||||||
Sbjct 651 ATTTAGTGCAGATCAAATCTGG-AGAGTCATCAAAGAAAATAAGGATCTT-GACCTTCCA 708
Query 986 GCACACAAGGTCATGGTAGCAACTGTGCGATGTGAGGAAATTGCCAATGA-AAAATT-CT 1043
|| ||||||||||||||||| |||||||| ||||| |||||||| ||||| || || |
Sbjct 709 GCCCACAAGGTCATGGTAGCTACTGTGCGGTGTGAAGAAATTGCAAATGAGAAGTTTGCG 768
Query 1044 CTAGTTTTATCGCGAATGAGAATTGGCGCGAGTTGGAAGAGGCTGTAC-AGTCTGGTCCT 1102
| | ||| || | || ||| | |||||| | |||| |||| || | || |||||||
Sbjct 769 C-A-TTTCATTACAAACGAGGACTGGCGCCAACTGGATGAGGAGGTGCAAG-CTGGTCCA 825
Query 1103 GTTTCCGGA-TTTGG-AAGAAAGCTGAGCT-CAATTCTCCAAGCAAGCTTATCAGAGTAT 1159
|||| | | ||||| ||| | ||| | || | |||||| | | |||||||||| |||
Sbjct 826 GTTT-CTAATTTTGGAAAG-AGGCTTA-CTACCATTCTCGGATCTTGCTTATCAGAATAT 882
Query 1160 GACACAGAAGCGACATACTTTGAAGAAAGTGTTAGATCATCCAAGAGGCAACAGC-TGCA 1218
||| || || |||| ||| || ||| |||| ||||| || ||||| ||||||| || |
Sbjct 883 GACGGGGAGGCTACATTCTTCGATGAAGGTGTCAGATCTTCGAAGAGACAACAGCTTG-A 941
Query 1219 AGAAAAG-TTATTGCAACTTGTTCAA-CCAAC-TTTCCAAGACGTGCTT-GGACAT-T-T 1272
||||||| || | ||||| | | || ||| | ||| ||||| || || |||||| |
Sbjct 942 AGAAAAGCTT-CTCCAACTAG-TGAATCCAGCGTTT-CAAGATGT-ATTGGGACATATAA 997
Query 1273 GAGGGCTGGAGCACTTGAAAACTTCAAGAATGCTTTTGAGAAGGCCTT-GG-ATGCTGGA 1330
|| || ||| ||||| || || ||| | ||||||| ||||| || || || |||
Sbjct 998 GATGG--GGAATGCTTGAGAAGTTTAAGGCTTCTTTTGATAAGGCTTTAGGCAT--TGGT 1053
Query 1331 GAAGGGTTTTCATCATC-TGCGAA-ATCCTGCGCTC-AGTCATGCAT-ATCTAAGTTTGA 1386
||||||||||| ||| | | | || || || | || || | ||||| | | || || ||
Sbjct 1054 GAAGGGTTTTCTTCAGCTTCCCAAGAT--TG-GTTCAAGACTTGCATGACCCAA-TTCGA 1109
Query 1387 TAAAGGA-TGTGAAGAG-GCTGTTATTGAACAAGCAAAATGGGATACATCTAAAACT-CG 1443
| || || |||| || | || | ||||||||||| || ||||| ||||| ||| | ||
Sbjct 1110 TGAA-GAGTGTGCAG-GTGCCATCATTGAACAAGCCAATTGGGACACATC-GAAAGTACG 1166
Query 1444 GGAAAAGCTTGAGCGTGATATTGAAGCTCATATCTCTTCTGTCCGTACTGCAAAGTTGGC 1503
||| ||||| | ||||| ||||| ||||| || || ||||| || ||| | ||||| |
Sbjct 1167 GGACAAGCTCGTCCGTGACATTGAGGCTCACATTTCCTCTGTGCGGACTTCCAAGTTATC 1226
Query 1504 TGAACTGACTACTCTGTATGAGTCAAAACTAAATGTAGCCTTATCTGGACCGGTGGAAGC 1563
|||||| || | ||| || ||||||||| | ||| ||| ||||| | ||||||||||||
Sbjct 1227 TGAACTTACCAGTCTATACGAGTCAAAAGTTCATGAAGCATTATCAGAACCGGTGGAAGC 1286
Query 1564 TCT-TCTGGATGGGGCTAATGATGAAACATGGCCAGCAAT-AAGAAAGCTACTTAGACGG 1621
||| | |||| || || || |||||||| ||| || || | ||| ||||| | | | ||
Sbjct 1287 TCTGT-TGGAAGGAGCCAACGATGAAACGTGGACAACAGTAAAG-AAGCTTCATCGGCGT 1344
Query 1622 GAAGGAGAAT-TGGCTGTCTATGGTCTCTCCAACGCATTATCTGGTTTCGAAATGGACGA 1680
||| |||| | || || | ||| ||| | ||| || ||||||| || ||||| ||
Sbjct 1345 GAAACTGAATCT-GCAGTTTCTGGACTCAATAGTGCACTAGCTGGTTTTGACATGGAAGA 1403
Query 1681 AGAAACACGGAG-TAAAATGCTTGCTGA-TC-TCGAGAACTATGCACGAGGTATTGTTGA 1737
||||||| ||| || |||| || || | || || | ||| || ||||| | ||||
Sbjct 1404 AGAAACA-AGAGATAGAATG-GTGAAGAGCCTTC-AGGATTATTCAAGAGGTGTCATTGA 1460
Query 1738 AACCAAGGCAAAGGAAGAGGCTGGAAGAGCGATGATGCGCATGAAGGATAGATTTGCTAC 1797
||| |||||||| ||||| |||||| | | ||||||| |||||||| || ||||||||
Sbjct 1461 AACTAAGGCAAAAGAAGAAGCTGGACGGGTTTTGATGCGTATGAAGGAAAGGTTTGCTAC 1520
Query 1798 AATCTTCAGCCATGATTCTGATTCAATGCCACGTGTTTGGACTGGAAAGGAGGA-CATCA 1856
|||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| | ||
Sbjct 1521 AATCTTCAGCCATGATTCTGATTCAATGCCTCGTGTTTGGACCGGAAAAGAGGATCTTC- 1579
Query 1857 GAGCAATTACAAAAATG-GCTCGTTCTGCGTCCTTGAAGCTGCTGTCTGTTATGGCTGTT 1915
| || ||||| ||| | ||||| ||||| ||||||||| |||| || || ||||||||
Sbjct 1580 GTGCCATTACTAAA-TCAGCTCGATCTGCTTCCTTGAAGTTGCTCTCAGTAATGGCTGTA 1638
Query 1916 ATACGCTTGGATGATGAACTCGACAATATTGAGAAGACATTGAC-GCTAGCTCTGTTTAA 1974
|| || |||| ||||||| ||| || || ||||||||| | | | | |||||||| |
Sbjct 1639 ATTCGATTGGGGGATGAACCCGATAACATCGAGAAGACACTAAATGTT-GCTCTGTTGGA 1697
Query 1975 TTCTACGG-GCAAC-AATGCTACTAGCAAGAGCATCAGCA-CAAT-TGATTCACTTGCCT 2030
| | || | || || || ||| || ||||| | || || | |||| |||| || |
Sbjct 1698 TCCAACAAAG-AATGAAA-CTTCTAAAAAAAGCATTA-CAACA-TCTGATCCACTGGCTT 1753
Query 2031 CAAGCACTTGGGA-GAAGGTTGCACCAGAAAAGA-CGTTGATCACACCTGTGCAGTGTAA 2088
||||||||||||| || | || || || || || | ||||||||||| ||||| |||||
Sbjct 1754 CAAGCACTTGGGATGA-GATTCCATCATCAA-GAACTTTGATCACACCGGTGCAATGTAA 1811
Query 2089 ATC-ACTGTGGAGGCAATTTAAGA-ACGAGACAGAATATAC 2127
||| | | ||||| || || |||| | || ||||| |||||
Sbjct 1812 ATCTA-TATGGAGACAGTTCAAGACA-GAAACAGAGTATAC 1850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109852266580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5