BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G13882.2

Length=802
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478793 jgi|Araly1|478793|fgenesh2_kg.3__1494__AT3G13882.1         420    9e-117


> Ahg478793 jgi|Araly1|478793|fgenesh2_kg.3__1494__AT3G13882.1
Length=681

 Score =  420 bits (227),  Expect = 9e-117
 Identities = 324/365 (89%), Gaps = 29/365 (8%)
 Strand=Plus/Plus

Query  438  AGTTGATCCTTCAAGTGAGCCATTGCTTCTGTTTCCTAAGAGGACATTCCAACCAAGCAC  497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  346  AGTTGATCCTTCAAGTGAGCCATTGCTTCTGTTTCCTAAGAGGACATTCCAACCAAGCAC  405

Query  498  TATAAGGCGTAAACGGAACCATGGATTCTTTGCTCGGAAGGCAACCAAAGGTGGACGGAG  557
            ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  406  TATTAGGCGTAAACGAAACCATGGATTCTTTGCTCGGAAGGCAACCAAAGGTGGACGGAG  465

Query  558  AGTCATAGCTCGGAGAATAGCAAAAGGGCGTCACAGAGTCACAGCCTAGAATCTCTCTAA  617
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  466  AGTCATAGCTCGGAGAATAGCAAAAGGGCGTCACAGAGTCACTGCCTAGAATCTCTCTAA  525

Query  618  TCTTTCCATTGATGAATCTCCGGTTATTCAGGCTAGAAAACCTGAAACTTCCATCTCCTA  677
            |||||| ||||||||||||||| |||||||||||||||||| ||    | |  | || | 
Sbjct  526  TCTTTCTATTGATGAATCTCCGTTTATTCAGGCTAGAAAAC-TG----T-C--T-TC-T-  574

Query  678  AATAACTTGTCTTCTTATCCATGTTCTCATGTGTTGTTGATCTCAGAATTGATCTGAAGT  737
              || ||| | || ||||    ||      || | ||||| |||||||| || |||||||
Sbjct  575  --TA-CTT-T-TT-TTAT----GT------GT-T-GTTGAACTCAGAATCGAACTGAAGT  616

Query  738  TAAAATTTTAACGATCTCAGCTCTTTTGTAATGGATAGTTTATATCAATGAATCCTTTTT  797
            ||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct  617  TAAAATTTTAAAGATCTCAGCTCCTTTGTAATGGATAGTTTATATCAAGGAATCCTTTTT  676

Query  798  TCCTC  802
            | |||
Sbjct  677  TTCTC  681


 Score =  337 bits (182),  Expect = 9e-92
 Identities = 194/200 (97%), Gaps = 0/200 (0%)
 Strand=Plus/Plus

Query  100  CAGAACAATCTCAGATCTTCTTTTCAATACATAGCTCCTCAGGGACAAGAAATCCCGCCG  159
            |||||||||||||||||||| |||||| | |||||||||||||||||||||||||| |||
Sbjct  149  CAGAACAATCTCAGATCTTCGTTTCAACAGATAGCTCCTCAGGGACAAGAAATCCCTCCG  208

Query  160  TATTTTTTCCCGTCGTTGTCGAATCTACAGAGCTCACTCATTTCGCGCCCTAACGACACT  219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  209  TATTTTTTCCCGTCGTTGTCGAATCTACAGAGCTCACTCATTTCGCGCCCTAACGACACT  268

Query  220  GCTTCGCTCCAGGAACTCAACGAACGTGGATTTCTTTACCCTTCTGGTCTTCCTTCACTC  279
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  269  GCTTCGCTCCAGGAACTCAACGAACGTGGGTTTCTTTACCCTTCTGGTCTTCCTTCACTC  328

Query  280  GAATTCTTCTTGCCAGAAGT  299
            ||||||||||| ||||||||
Sbjct  329  GAATTCTTCTTACCAGAAGT  348



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29621506509


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5