BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13890.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478795 jgi|Araly1|478795|fgenesh2_kg.3__1496__AT3G13890.1 1731 0.0
Ahg315039 jgi|Araly1|315039|fgenesh1_pm.C_scaffold_2000072 126 3e-28
Ahg476577 jgi|Araly1|476577|fgenesh2_kg.2__1707__AT1G74430.1 69.4 5e-11
> Ahg478795 jgi|Araly1|478795|fgenesh2_kg.3__1496__AT3G13890.1
Length=1107
Score = 1731 bits (937), Expect = 0.0
Identities = 1059/1115 (95%), Gaps = 19/1115 (2%)
Strand=Plus/Plus
Query 1 ATGGGTCATCACTCATGCTGCAACAAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCTGAA 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGTCATCACTCGTGCTGCAACAAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCCGAA 60
Query 61 GAAGACGAAAAGCTCATCAACTACATCAATTCATATGGCCATGGATGTTGGAGCTCTGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGACGAAAAGCTCATCAACTACATCAATTCATATGGCCATGGATGTTGGAGCTCTGTT 120
Query 121 CCTAAACATGCAGGCACTTATACACATATA-C-ATGGGTTTTGTTTGCAGAGATGTGGAA 178
|| ||||||||||||| || |||||||||| | || || ||||||||||||||||||
Sbjct 121 CCCAAACATGCAGGCATTTCTACACATATATCTAT-GG----GTTTGCAGAGATGTGGAA 175
Query 179 AGAGTTGTAGATTAAGATGGATAAATTATCTAAGACCTGATCTTAAACGTGGAAGCTTCT 238
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 176 AGAGTTGTAGATTAAGATGGATAAATTATCTACGACCTGATCTTAAACGTGGAAGCTTCT 235
Query 239 CTCCTCAAGAAGCTGCTCTTATCATTGAGCTTCACAGCATTCTTGGTAACAGATGGGCTC 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 236 CTCCTCAAGAAGCTGCTCTTATCATTGAGCTTCACAGCATTCTTGGTAACAGATGGGCAC 295
Query 299 AAATTGCTAAACATCTACCTGGAAGAACAGATAACGAGGTCAAGAATTTCTGGAACTCGA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 296 AAATTGCTAAACATCTACCTGGAAGAACAGATAACGAGGTCAAGAATTTCTGGAATTCAA 355
Query 359 GCATTAAAAAGAAGCTCATGTCTCACcatcatcacggtcatca--t-catcatcatcTCT 415
|||| |||||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 356 GCATAAAAAAGAAGCTCATGTCTCACCATCATCACGGTCATCACCTTCATCACCATCTCT 415
Query 416 CTTCCATGGCGAGTTTGCTCAC-AA----A-CCTTCCTTATCACAATGGATTCAACCCTA 469
|||||||||||||||||||||| || | |||||||||||||||||||||| ||||||
Sbjct 416 CTTCCATGGCGAGTTTGCTCACCAACGTTAACCTTCCTTATCACAATGGATTCCACCCTA 475
Query 470 CTACAGTCGACGATGAAAGTTCAAGATTCATGTCCAATATCATCACAAACACTAACCCTA 529
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CTACTGTCGACGATGAAAGTTCAAGATTCATGTCCAATATCATCACAAACACTAACCCTA 535
Query 530 ATTTCATCACTCCAAGCCATCTCTCTCTTCCTTCTCCTCATGTTATGACCCCATTGATGT 589
||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||| |
Sbjct 536 ATTTCATCACTACAAGCCACCTCTCTCTTCCTTCTCCTCATGTTATGGCCCCATTGATAT 595
Query 590 TCCCAACCTCTAGAGAAGGAGATTTCAAGTTTCTAACCACAAACAACCCAAACCAATCTC 649
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 596 TCCCAACCTCTAGAGAAGGAGATTTCAAGTTTCTAACCACAAACAACACAAACCAATCTC 655
Query 650 ATCACCATGATAATAACCATTACAACAACCTCGACATTTTGTCACCCACACCAACTATAA 709
|||| || ||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 656 ATCATCAAGATAATAACTATTACAACAACCTCGACATTTTGTCAGCCACACCATCTATAA 715
Query 710 ACAATCATCATCAACCTTCACTTTCTTCTTGTCCTCATGATAATAATCTCCAATGGCCAG 769
||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 716 ACAATCATCATCAACTTTCACTTTCTTCTTGTCCTCATGATAATGATCCCCAATGGCCAG 775
Query 770 CGTTACCAGATTTCCCAGCGAGTACCATTTCTGGTTTCCAAGAAACCCTTCAAGATTATG 829
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 776 CTTTACCAGATTTCCCAGCGAGTACCATTTCTGCTTTCCAAGAAACCCTTCAAGATTATG 835
Query 830 ATGATGCTAATAAACTCAACGTGTTTGTGACACCATTCAACGATAATGCCAAAAAGTTAT 889
| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 836 ACGATGCTAATAAACTCAACGTGTTTGTGACACCATACAACGAAAATGCCAAAAAGTTAT 895
Query 890 TATGTGGAGAAGTTCTCGAAGGCAAAGTACTATCTTCCTCCTCACCAATTTCACAAGATC 949
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 896 TATGTGGAGAAGTTCTCGAAGGCAAAGTACTATCTTCCTCCTCGCCAATATCACAAGATC 955
Query 950 ACGGCCTTTTTCTTCCCACCACGTACAACTTTCAAATGACTTCTACGAGTGatcatcaac 1009
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 956 ACGGCCTTCTTCTTCCCACCACGTACAACTTTCAAATGACTTCTACGAGTGATCATCATC 1015
Query 1010 atcatcatcgagtggactcatacatcaatcacatgatcataccatcatcatcctcatcGT 1069
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1016 ATCAT-A--GAGTGGACTCATACATCAATCACATGATCATACCATCATCATCCTCATCAT 1072
Query 1070 CGCCAATCTCTTGTGGACAGTACGTCATAACTTAA 1104
||||||| |||||||||||||||||||||||||||
Sbjct 1073 CGCCAATTTCTTGTGGACAGTACGTCATAACTTAA 1107
> Ahg315039 jgi|Araly1|315039|fgenesh1_pm.C_scaffold_2000072
Length=1119
Score = 126 bits (68), Expect = 3e-28
Identities = 101/116 (87%), Gaps = 6/116 (5%)
Strand=Plus/Plus
Query 1 ATGGGTCATCACTCATGCTGCAACAAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCTGAA 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGTCATCACTCATGCTGCAACCAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCAGAA 60
Query 61 GAAGACGAAAAGCTCATCA-ACTACATCA-AT-TCATATGGCCATGGATGTTGGAG 113
||||| || ||||| || | | || |||| | |||| ||| |||||||||||||
Sbjct 61 GAAGATGAGAAGCTTATTAGA-TATATCACAACTCAT--GGCTATGGATGTTGGAG 113
> Ahg476577 jgi|Araly1|476577|fgenesh2_kg.2__1707__AT1G74430.1
Length=1272
Score = 69.4 bits (37), Expect = 5e-11
Identities = 68/83 (82%), Gaps = 2/83 (2%)
Strand=Plus/Plus
Query 164 TGCAGAGATGTGGAAAGAGTTGTAGATTAAGATGGATAAATTATCTAAGACCTGATCTTA 223
|||| |||||||||||||||||||||||||||||| | |||||| | || |||| |||
Sbjct 322 TGCAAAGATGTGGAAAGAGTTGTAGATTAAGATGGCTGAATTATTTGAGGCCTGGGATTA 381
Query 224 AACGTGG-AAGCTTCTCTCCTCA 245
|| | || || ||| |||||||
Sbjct 382 AAAGAGGCAAA-TTCACTCCTCA 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5