BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G13898.1

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg929158 jgi|Araly1|929158|scaffold_301615.1                        276    1e-73


> Ahg929158 jgi|Araly1|929158|scaffold_301615.1
Length=373

 Score =  276 bits (149),  Expect = 1e-73
 Identities = 234/273 (86%), Gaps = 13/273 (5%)
 Strand=Plus/Plus

Query  71   CAGAGATAATAAAG-CCGCAGGCTGCAGAAGAAAACTCTAGGAGACGCATTTTGAACCCC  129
            |||||||||  ||| || |||||||||||| | |||||||  || | ||| |||   |||
Sbjct  97   CAGAGATAA-CAAGCCCACAGGCTGCAGAACACAACTCTAAAAGGCCCATGTTGGTTCCC  155

Query  130  AATGagaataaagaaga-gatag-tgaaa---ag--aagaagaagaaTAGGATCAAAGCC  182
            ||||||||||||| |||  | ||  ||||   ||  ||||||||||||||||||||||||
Sbjct  156  AATGAGAATAAAG-AGATAAAAGAAGAAATGGAGAAAAGAAGAAGAATAGGATCAAAGCC  214

Query  183  ACCAAGTTGTGAGAAAAAATGCTATGGATGTGAGCCATGTGAAGCAATCCAATTCCCTAC  242
            |||||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||
Sbjct  215  ACCAAGTTGTGATAAGAAATGCTATGGATGTGAGCCATGTGAAGCAATTCAAGTCCCTAC  274

Query  243  CATTTCTTCAATCCCTCACCTATCTCCTCATTATGCTAATTACCAACCTGAGGGTTGGAG  302
            |||||||||||| ||||| ||||||||||||||||||||||| || || |||||||||||
Sbjct  275  CATTTCTTCAATTCCTCATCTATCTCCTCATTATGCTAATTATCAGCCAGAGGGTTGGAG  334

Query  303  ATGCCATTGTCCTCCTCCTTAACTAATCATTCT  335
            |||||||||| |||||  | || ||||||||||
Sbjct  335  ATGCCATTGTGCTCCT--T-AATTAATCATTCT  364



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17284481817


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5