BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G13910.1

Length=565
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478797 jgi|Araly1|478797|fgenesh2_kg.3__1498__AT3G13910.1         577    3e-164


> Ahg478797 jgi|Araly1|478797|fgenesh2_kg.3__1498__AT3G13910.1
Length=538

 Score =  577 bits (312),  Expect = 3e-164
 Identities = 387/421 (92%), Gaps = 14/421 (3%)
 Strand=Plus/Plus

Query  6    CGACGACGACTCTTCTTCGTTCAGACCAAAACTCTCAAACTCAGCCATGGCGAATTATTA  65
            ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct  1    CGACGACGACTCTTCTTCGTTCAGACCAAAACTCTCAAAATCAGCCATGGAGAATTATTA  60

Query  66   C---------GAACCGCCAGCTTCTGGAAACCGTCGAGACGCAGTGAAAGGTTACAACAG  116
            |         |||||||||||| |||| ||||| |||||||||||||||||||   ||||
Sbjct  61   CAAAGAAATGGAACCGCCAGCTGCTGGGAACCGCCGAGACGCAGTGAAAGGTT---ACAG  117

Query  117  CGGGAGCTTCGACGATTCAGCCGGCGATCAGAGTCAAACGAACGATTACCAGTTAAAGAT  176
            ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct  118  CGGGAGCTTCGACGATTCAGCTGGCGATCAGAGTCAGACGAACGATTACCAGTTAAAGAT  177

Query  177  AAAGAAAAGCAAAAGCGTTCCAAACGCGGATCGTGCGGCGTCAAGAAGCTGGAGTTTCAG  236
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  178  AAAGAAAAGCAAAAGCGTTCCAAACGCGGATCGTGCGGCGTCTAGAAGCTGGAGTTTCAG  237

Query  237  CGATCCAGAATCGCGGAGGAAGAGAAGAGTCGCTGGCTACAAAGTTTATTCCGTTGAACA  296
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  238  CGATCCAGAATCGCGGAGGAAGAGAAGAGTCGCTGGCTATAAAGTTTATTCCGTTGAACA  297

Query  297  GAAGATGAAGGGATCCATTCGAAAGAGCTTCAAATGGTTCAAAGACATTATCGGTATTTC  356
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  298  GAAGATGAAGGGATCCATTCGAAAGAGCTTCAAGTGGTTCAAAGACATTATCGGTATTTC  357

Query  357  TTGATATACCTTCTCTCAACTTTCTTAAA-ATCTCTTCTTTGTGCTGTGAGAGTTAAATA  415
            ||||||||  || | |  | ||||||||| | ||||||||  |||| |||||||||||||
Sbjct  358  TTGATATATTTT-TATTTATTTTCTTAAAGAACTCTTCTTCATGCTATGAGAGTTAAATA  416

Query  416  T  416
            |
Sbjct  417  T  417


 Score =  152 bits (82),  Expect = 2e-36
 Identities = 109/121 (90%), Gaps = 6/121 (5%)
 Strand=Plus/Plus

Query  450  TTTCTCTTGCAACTATATGTA-G--A-AGA-AGAGTCTTTGA-ACTTGAATGAGACAGAT  503
            ||||||||||||||||||  | |  | | | |||||||||||  ||||||||||||||||
Sbjct  418  TTTCTCTTGCAACTATATCAAGGTTATATATAGAGTCTTTGATTCTTGAATGAGACAGAT  477

Query  504  AATGAATGAAATCAGTTTTCATATCTACATGTGAATATGACCATACTTCTTCAGTTACAA  563
            |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct  478  AATGAATGAAATCAGTTTTCATATCTACCTGTGAATATGACCATACTTCTTCAATTACAA  537

Query  564  T  564
            |
Sbjct  538  T  538



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20642173649


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5