BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13920.2
Length=1764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904317 jgi|Araly1|904317|Al_scaffold_0003_1445 1982 0.0
Ahg914623 jgi|Araly1|914623|Al_scaffold_0001_4877 1461 0.0
Ahg908883 jgi|Araly1|908883|Al_scaffold_0002_1964 955 0.0
> Ahg904317 jgi|Araly1|904317|Al_scaffold_0003_1445
Length=1239
Score = 1982 bits (1073), Expect = 0.0
Identities = 1137/1169 (97%), Gaps = 0/1169 (0%)
Strand=Plus/Plus
Query 187 ATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTC 246
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGCGGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGATCAGAAACTG 60
Query 247 AATGAAGTACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAGC 306
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 61 AATGAAGTACTTGAGGGACAAGATGAGTTCTTCACATCTTATGATGAGGTTCATGAGAGC 120
Query 307 TTTGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGGTTTTGAG 366
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTGATGCCATGGGTCTGCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGGTTTTGAG 180
Query 367 AAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTAAGGGTCTTGATGTGATT 426
||||||||||||||||||||||||||||| |||||||| || || |||||||||||||||
Sbjct 181 AAGCCTTCTGCTATTCAGCAAAGAGGAATTGTCCCCTTTTGCAAAGGTCTTGATGTGATT 240
Query 427 CAACAGGCTCAGTCTGGTACTGGGAAAACAGCAACTTTCTGCTCTGGTGTCTTGCAGCAG 486
|||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 241 CAACAGGCCCAGTCTGGTACTGGGAAAACTGCGACTTTCTGCTCTGGTGTCTTGCAGCAG 300
Query 487 CTGGACTTCTCCCTTATCCAGTGTCAGGCTTTGGTTCTAGCTCCAACTAGAGAGCTTGCT 546
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTGGACTTCTCCCTTGTCCAGTGTCAGGCTTTGGTTCTAGCTCCAACTAGAGAGCTTGCT 360
Query 547 CAGCAAATTGAGAAGGTCATGAGGGCCCTTGGTGATTACCTTGGTGTCAAGGTTCACGCC 606
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 CAGCAAATTGAGAAGGTCATGAGGGCCCTCGGTGATTACCTTGGTGTCAAGGTTCACGCC 420
Query 607 TGTGTTGGTGGAACCAGTGTCCGTGAGGATCAGCGCATCCTCCAAGCTGGTGTCCATGTT 666
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 TGTGTTGGTGGAACCAGTGTCCGTGAGGATCAGCGTATCCTCCAAGCTGGTGTCCATGTT 480
Query 667 GTTGTTGGAACTCCAGGGCGTGTCTTTGACATGTTGAAGAGGCAGTCTCTTCGTGCTGAC 726
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 GTTGTTGGAACTCCAGGACGTGTCTTTGACATGTTGAAGAGGCAGTCTCTCCGTGCTGAC 540
Query 727 AACATCAAGATGTTTGTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGAC 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AACATCAAGATGTTTGTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGAC 600
Query 787 CAGATCTATGACATATTCCAGCTTCTTCCACCAAAGATCCAAGTTGGTGTGTTCTCCGCA 846
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 601 CAGATCTATGACATATTCCAGCTTCTACCACCAAAGATCCAAGTTGGTGTGTTCTCCGCA 660
Query 847 ACAATGCCACCAGAAGCTCTTGAGATCACAAGGAAGTTCATGAGCAAGCCAGTGAGAATC 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACAATGCCACCAGAAGCTCTTGAGATCACAAGGAAGTTCATGAGCAAGCCAGTGAGAATC 720
Query 907 TTGGTGAAGCGTGATGAGCTTACCCTTGAAGGTATCAAGCAGTTCTACGTCAACGTTGAG 966
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 721 TTGGTGAAGCGTGATGAGCTGACCCTTGAAGGTATCAAGCAGTTCTATGTCAACGTTGAG 780
Query 967 AAAGAAGAGTGGAAGCTCGAGACACTCTGTGATCTCTACGAGACTCTTGCCATCACTCAG 1026
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 781 AAAGAAGAGTGGAAGCTCGAGACACTTTGTGATCTCTACGAGACTCTGGCCATCACTCAG 840
Query 1027 AGTGTCATCTTCGTGAACACCAGGCGTAAGGTTGATTGGCTCACAGACAAAATGAGAAGC 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGTGTCATCTTCGTGAACACCAGGCGTAAGGTTGATTGGCTCACAGACAAAATGAGAAGC 900
Query 1087 CGTGACCACACAGTCTCTGCAACTCACGGAGACATGGACCAGAACACCAGGGACATCATC 1146
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 901 CGTGACCACACAGTCTCTGCAACTCACGGAGACATGGACCAGAACACCAGAGACATCATC 960
Query 1147 ATGAGAGAGTTCAGGTCTGGTTCCTCCCGTGTTCTCATCACCACTGACCTCTTAGCTCGT 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 961 ATGAGAGAGTTCAGGTCTGGTTCCTCCCGTGTTCTCATCACCACTGACCTCTTGGCTCGT 1020
Query 1207 GGTATTGATGTCCAACAAGTCTCCCTGGTTATCAACTTCGATCTCCCAACTCAGCCAGAG 1266
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1021 GGTATTGATGTTCAACAAGTCTCTCTGGTTATCAACTTCGATCTCCCAACTCAGCCAGAG 1080
Query 1267 AACTACCTTCACCGTATCGGAAGAAGTGGAAGGTTCGGGAGAAAGGGTGTTGCGATCAAT 1326
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1081 AACTACCTCCACCGTATCGGAAGAAGTGGAAGGTTCGGGAGAAAGGGTGTGGCGATCAAT 1140
Query 1327 TTCGTGACCCGTGATGATGAGAGGATGCT 1355
|| |||||||| |||||||| ||||||||
Sbjct 1141 TTTGTGACCCGCGATGATGACAGGATGCT 1169
> Ahg914623 jgi|Araly1|914623|Al_scaffold_0001_4877
Length=1239
Score = 1461 bits (791), Expect = 0.0
Identities = 1048/1174 (89%), Gaps = 10/1174 (1%)
Strand=Plus/Plus
Query 187 ATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTC 246
||||||||||||||| ||||||| ||||| |||||| | ||||||||||||||||| ||
Sbjct 1 ATGGCAGGATCTGCAGCAGAAGGTACACAATTTGATACGCGTCAGTTTGACCAGAAGCTG 60
Query 247 AATGAAGTACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAGC 306
||||||||||| |||||||| |||||||||||||| || |||||||| || |||||||||
Sbjct 61 AATGAAGTACTCGAGGGACAGGATGAGTTCTTCACCTCATATGATGAGGTCCATGAGAGC 120
Query 307 TTTGATGCCATGGGTCTT-CAAGAGAACCTTCTCAGGGGTATTTATGCTTATGGTTTTGA 365
||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 121 TTTGATGCCATGGGT-TTGCAAGAGAACCTTCTCAGGGGTATCTATGCTTATGGTTTCGA 179
Query 366 GAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTAAGGGTCTTGATGTGAT 425
||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||
Sbjct 180 AAAGCCTTCTGCTATTCAGCAAAGAGGAATTGTACCCTTTTGCAAGGGTCTTGATGTGAT 239
Query 426 TCAACAGGCTCAGTCTGGTACTGGGAAAACAGCAACTTTCTGCTCTGGTGTCTTGCAGCA 485
|| ||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 240 CCAGCAGGCACAGTCTGGTACTGGAAAAACCGCCACTTTCTGCTCTGGTGTCTTGCAGCA 299
Query 486 GCTGGACTTCT-CCCTTATCCAGTGTCAGGCTTTGGTTCTAGCTCCAACTAGAGAGCTTG 544
||| ||| | | ||||| ||||||| |||||| | ||| | ||||| || ||||||||||
Sbjct 300 GCTTGAC-TATACCCTTGTCCAGTGCCAGGCTCTCGTTTTGGCTCCCACCAGAGAGCTTG 358
Query 545 CTCAGCAAATTGAGAAGGTCATGAGGGCCCTTGGTGATTACCTTGGTGTCAAGGTTCACG 604
||||||| ||||||||||||||| | |||||||||||||||| || ||||| ||||| |
Sbjct 359 CTCAGCAGATTGAGAAGGTCATGCGTGCCCTTGGTGATTACCAAGGCGTCAAAGTTCATG 418
Query 605 CCTGTGTTGGTGGAACCAGTGTCCGTGAGGATCAGCGCATCCTCCAAGCTGGTGTCCATG 664
||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||
Sbjct 419 CCTGTGTTGGTGGAACCAGCGTCCGTGAGGATCAGCGCATTCTCCAGGCTGGTGTTCATG 478
Query 665 TTGTTGTTGGAACTCCAGGGCGTGTCTTTGACATG-TT-GAAGAGGCAGTCTCTTCGTGC 722
|||| ||||||||||| || ||||| ||||||||| || ||||| || |||||||| |
Sbjct 479 TTGTGGTTGGAACTCCCGGTCGTGTGTTTGACATGCTTAGAAGA--CAATCTCTTCGCCC 536
Query 723 TGACAACATCAAGATGTTTGTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAA 782
||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 537 TGATTGCATCAAGATGTTTGTCCTTGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAA 596
Query 783 GGACCAGATCTATGACATATTCCAGCTTCTTCCACCAAAGATCCAAGTTGGTGTGTTCTC 842
||| |||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||
Sbjct 597 GGATCAGATCTATGACATATTCCAGCTTCTCCCACCAAAGATTCAGGTTGGAGTGTTCTC 656
Query 843 CGCAACAATGCCACCAGAAGCTCTTGAGATCACAAGGAAGTTCATGAGCAAGCCAGTGAG 902
||||| ||||| || |||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 657 AGCAACGATGCCTCCGGAAGCTCTGGAGATCACAAGGAAATTCATGAGCAAACCAGTGAG 716
Query 903 AATCTTGGTGAAGCGTGATGAGCTTACCCTTGAAGGTATCAAGCAGTTCTACGTCAACGT 962
|||||||||||| ||||||||||| || ||||||||||||||||| |||||||| |||||
Sbjct 717 AATCTTGGTGAAACGTGATGAGCTCACACTTGAAGGTATCAAGCAATTCTACGTGAACGT 776
Query 963 TGAGAAAGAAGAGTGGAAGCTCGAGACACTCTGTGATCTCTACGAGACTCTTGCCATCAC 1022
|||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||
Sbjct 777 GGAGAAAGAAGAGTGGAAGCTCGAGACTCTCTGCGATCTCTATGAGACTCTAGCCATCAC 836
Query 1023 TCAGAGTGTCATCTTCGTGAACAC-CAGGCGTAAGGTTGATTGGCTCACAGACAAAATGA 1081
||||||||||||||| || ||||| | | || ||||| || |||||||||||||||||||
Sbjct 837 TCAGAGTGTCATCTTTGTCAACACTC-GTCGCAAGGTCGACTGGCTCACAGACAAAATGA 895
Query 1082 GAAGCCGTGACCACACAGTCTCTGCAACTCACGGAGACATGGACCAGAACACCAGGGACA 1141
|||||||||||||||||||||| |||||||| |||||||||||||| ||||| || ||||
Sbjct 896 GAAGCCGTGACCACACAGTCTCAGCAACTCATGGAGACATGGACCAAAACACAAGAGACA 955
Query 1142 TCATCATGAGAGAGTTCAGGTCTGGTTCCTCCCGTGTTCTCATCACCACTGACCTCTTAG 1201
||||||||||||| |||||||||||||| || |||||||| ||||| || || ||||| |
Sbjct 956 TCATCATGAGAGAATTCAGGTCTGGTTCTTCTCGTGTTCTAATCACGACCGATCTCTTGG 1015
Query 1202 CTCGTGGTATTGATGTCCAACAAGTCTCCCTGGTTATCAACTTCGATCTCCCAACTCAGC 1261
|||||||||||||||| || |||||||| ||||| || ||||| || |||||||||||||
Sbjct 1016 CTCGTGGTATTGATGTGCAGCAAGTCTCTCTGGTCATAAACTTTGACCTCCCAACTCAGC 1075
Query 1262 CAGAGAACTACCTTCACCGTATCGGAAGAAGTGGAAGGTTCGGGAGAAAGGGTGTTGCGA 1321
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1076 CAGAGAATTACCTTCACCGTATCGGAAGAAGTGGAAGGTTCGGGAGAAAGGGTGTGGCCA 1135
Query 1322 TCAATTTCGTGACCCGTGATGATGAGAGGATGCT 1355
| || |||||||| ||||||||||| || |||||
Sbjct 1136 TTAACTTCGTGACTCGTGATGATGATAGAATGCT 1169
> Ahg908883 jgi|Araly1|908883|Al_scaffold_0002_1964
Length=1245
Score = 955 bits (517), Expect = 0.0
Identities = 900/1084 (83%), Gaps = 30/1084 (3%)
Strand=Plus/Plus
Query 285 CTATGATGATGTTCATGAGAGCTTTGATGCCATGGGTCTT-CAA-GAGAACCTTCTCAGG 342
|||||| || ||| || ||||||||||| || || || || || | ||||| |||
Sbjct 105 CTATGACGAAGTTTGCGATAGCTTTGATGCAAT-GGAATTGAAACCAG-ATCTTCTTAGG 162
Query 343 GGTATTTATGCTTATGGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCC 402
|||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 163 GGTATTTATGCTTATGGTTTTGAGAAGCCTTCTGCTATTCAGCAGAGAGGAATTATTCCA 222
Query 403 TTCTGTAAGGGTCTTGATGTGATTCAACAGGCTCAGTCTGGTACTGGGAAA-ACAGCAAC 461
||||| |||||||||||||| || || || ||||| ||||| ||||| ||| || || ||
Sbjct 223 TTCTGCAAGGGTCTTGATGTCATCCAGCAAGCTCAATCTGGAACTGG-AAAGACCGCTAC 281
Query 462 -TTTCTGCTCTGGTGTCTTGCAGCAGCTGGACT-TCTCCCTTA-TCCAGTGTCAGGCT-T 517
||| ||||||||||| || |||||||| || | | | || | || || || ||| |
Sbjct 282 CTTT-TGCTCTGGTGTTTTACAGCAGCTCGA-TAT-TAGTTTGGTTCAATGCCAAGCTCT 338
Query 518 TGGTTCTAGCTCCAACTAGAGAGCTTGCTCAGCAAATTGAGAAGGTCATGAGGGCCCTTG 577
|| || | ||||| || |||| ||||| ||||||||||| ||||| |||||||| ||||
Sbjct 339 TGTTT-TGGCTCCTACCCGAGAACTTGCCCAGCAAATTGAAAAGGTTATGAGGGCACTTG 397
Query 578 GTGATTACCTTGGTGTCAAGGTTCACGCCTGTGTTGGTGGAACCAGTGTCCGTGAGGATC 637
|||| || ||||| ||||||| ||| || |||||||||||||| ||||| ||||||||||
Sbjct 398 GTGACTATCTTGGCGTCAAGGCTCAGGCTTGTGTTGGTGGAACTAGTGTTCGTGAGGATC 457
Query 638 AGCGCATCCTCCAAG-CTGGTGTCCATGTTGTTGTTGGAACTCCAGGGCGTGTCTTTGAC 696
| ||| | || || | ||||||| ||||||||||||||||| || || ||||||||||||
Sbjct 458 AACGCGTTCTTCA-GTCTGGTGTTCATGTTGTTGTTGGAACCCCTGGTCGTGTCTTTGAC 516
Query 697 ATGTTGAAG-AGGCAGTCTCTTCGTGCTGA--CAACATCAAGATGTTTGTTCTCGATGAA 753
||||| | || || || || || ||||| ||| |||| ||||||||||| ||||||
Sbjct 517 TTGTTGC-GTAGACAATCCCTCCGCGCTGATGCAA--TCAAAATGTTTGTTCTTGATGAA 573
Query 754 GCTGATGAAATGCTCTCCCGTGGTTTCAAGGACCAGATCTATGACATATTCCAGCTTCTT 813
||||||||||||||||| |||||||||||||| ||||| || ||||| ||||||||||||
Sbjct 574 GCTGATGAAATGCTCTCTCGTGGTTTCAAGGATCAGATATACGACATCTTCCAGCTTCTT 633
Query 814 CCA-CCAAAGATCCAAGTTGGTGTGTTCTCCGCAACAATGCCACCAGAAGCTCTTGAGAT 872
|| |||| | || | || ||||| ||||| || ||||||||||| ||||| ||||||||
Sbjct 634 CCTTCCAAGGTTC-AGGTCGGTGTTTTCTCTGCTACAATGCCACCCGAAGCCCTTGAGAT 692
Query 873 CACAAGGAAGTTCATGAGCAAGCCAGTGAGAAT-CTTGGTGAAGCGTGATGAGCTTACCC 931
|||||||||||| |||| ||| ||||| || || || ||| ||||| || ||||| || |
Sbjct 693 CACAAGGAAGTTTATGAACAAACCAGTCAGGATTCT-GGTCAAGCGAGACGAGCTGACTC 751
Query 932 TTGAAGGTATCAAGCAGTTCTACGTCAACGTTGAGAAAGAAGAGTGGAAGCTCGAGACAC 991
| |||||||| |||||||| || ||||| || || || ||||||||||| ||||||||||
Sbjct 752 TGGAAGGTATTAAGCAGTTTTATGTCAATGTAGACAAGGAAGAGTGGAAACTCGAGACAC 811
Query 992 TCTGTGATCTCTACGAGACTCTTGCCATCACTCAGAGTGTCATCTTCGTGAACACCAGGC 1051
| ||||||||||||||||| || |||||||| || ||||||||||| |||||||| ||||
Sbjct 812 TATGTGATCTCTACGAGACACTGGCCATCACGCAAAGTGTCATCTTTGTGAACACAAGGC 871
Query 1052 GTAAGGTTGATTGGCTCACAGACAAAATGAGAAGCCGTGACCACACAGTCTCTGCAACTC 1111
|||||||||||||||| || |||||||||||||||||||||||||| ||||| || || |
Sbjct 872 GTAAGGTTGATTGGCTAACCGACAAAATGAGAAGCCGTGACCACACTGTCTCAGCCACAC 931
Query 1112 ACGGAGACATGGACCAGAACACCAGGGACATCATCATGAGAGAGTTCAGGTCTGGTTCCT 1171
|||||||||||||||||||||| || |||||||||||| | || ||| | ||||| || |
Sbjct 932 ACGGAGACATGGACCAGAACACAAGAGACATCATCATGCGCGAATTCCGCTCTGGATCTT 991
Query 1172 CCCGTGTTCTCATCACCACTGACCT-CTTAGCTCGTGGTATTGATGTCCAACAAGTCTCC 1230
|||| || ||||| ||||||||||| ||| ||||||||||||||||| || ||||||||
Sbjct 992 CCCGCGTCCTCATAACCACTGACCTTCTT-GCTCGTGGTATTGATGTTCAGCAAGTCTCT 1050
Query 1231 CTGGTTATCAACTTCGATCTCCCAACTCAGCCAGAGAACTACCTTCACCGTATCGGAAGA 1290
|| || || ||||| || |||||||| || || ||||| |||||||||||||| ||||||
Sbjct 1051 CTTGTCATAAACTTTGACCTCCCAACCCAACCGGAGAATTACCTTCACCGTATTGGAAGA 1110
Query 1291 AGTGGAAGGTTCGGGAGAAAGGGTGTTGCGATCAATTTCGTGACC-CGTGATGATGAGAG 1349
||||||||||| || |||||||| || || ||||||||| |||| || || ||||||||
Sbjct 1111 AGTGGAAGGTTTGGAAGAAAGGGAGTGGCAATCAATTTCATGACAACG-GAGGATGAGAG 1169
Query 1350 GATG 1353
|||
Sbjct 1170 AATG 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66200845810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5