BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13920.2 Length=1764 Score E Sequences producing significant alignments: (Bits) Value Ahg904317 jgi|Araly1|904317|Al_scaffold_0003_1445 1982 0.0 Ahg914623 jgi|Araly1|914623|Al_scaffold_0001_4877 1461 0.0 Ahg908883 jgi|Araly1|908883|Al_scaffold_0002_1964 955 0.0 > Ahg904317 jgi|Araly1|904317|Al_scaffold_0003_1445 Length=1239 Score = 1982 bits (1073), Expect = 0.0 Identities = 1137/1169 (97%), Gaps = 0/1169 (0%) Strand=Plus/Plus Query 187 ATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTC 246 ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1 ATGGCGGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGATCAGAAACTG 60 Query 247 AATGAAGTACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAGC 306 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 61 AATGAAGTACTTGAGGGACAAGATGAGTTCTTCACATCTTATGATGAGGTTCATGAGAGC 120 Query 307 TTTGATGCCATGGGTCTTCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGGTTTTGAG 366 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTTGATGCCATGGGTCTGCAAGAGAACCTTCTCAGGGGTATTTATGCTTATGGTTTTGAG 180 Query 367 AAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTAAGGGTCTTGATGTGATT 426 ||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||| Sbjct 181 AAGCCTTCTGCTATTCAGCAAAGAGGAATTGTCCCCTTTTGCAAAGGTCTTGATGTGATT 240 Query 427 CAACAGGCTCAGTCTGGTACTGGGAAAACAGCAACTTTCTGCTCTGGTGTCTTGCAGCAG 486 |||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 241 CAACAGGCCCAGTCTGGTACTGGGAAAACTGCGACTTTCTGCTCTGGTGTCTTGCAGCAG 300 Query 487 CTGGACTTCTCCCTTATCCAGTGTCAGGCTTTGGTTCTAGCTCCAACTAGAGAGCTTGCT 546 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CTGGACTTCTCCCTTGTCCAGTGTCAGGCTTTGGTTCTAGCTCCAACTAGAGAGCTTGCT 360 Query 547 CAGCAAATTGAGAAGGTCATGAGGGCCCTTGGTGATTACCTTGGTGTCAAGGTTCACGCC 606 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 361 CAGCAAATTGAGAAGGTCATGAGGGCCCTCGGTGATTACCTTGGTGTCAAGGTTCACGCC 420 Query 607 TGTGTTGGTGGAACCAGTGTCCGTGAGGATCAGCGCATCCTCCAAGCTGGTGTCCATGTT 666 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 421 TGTGTTGGTGGAACCAGTGTCCGTGAGGATCAGCGTATCCTCCAAGCTGGTGTCCATGTT 480 Query 667 GTTGTTGGAACTCCAGGGCGTGTCTTTGACATGTTGAAGAGGCAGTCTCTTCGTGCTGAC 726 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 481 GTTGTTGGAACTCCAGGACGTGTCTTTGACATGTTGAAGAGGCAGTCTCTCCGTGCTGAC 540 Query 727 AACATCAAGATGTTTGTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGAC 786 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 AACATCAAGATGTTTGTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGAC 600 Query 787 CAGATCTATGACATATTCCAGCTTCTTCCACCAAAGATCCAAGTTGGTGTGTTCTCCGCA 846 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 601 CAGATCTATGACATATTCCAGCTTCTACCACCAAAGATCCAAGTTGGTGTGTTCTCCGCA 660 Query 847 ACAATGCCACCAGAAGCTCTTGAGATCACAAGGAAGTTCATGAGCAAGCCAGTGAGAATC 906 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 ACAATGCCACCAGAAGCTCTTGAGATCACAAGGAAGTTCATGAGCAAGCCAGTGAGAATC 720 Query 907 TTGGTGAAGCGTGATGAGCTTACCCTTGAAGGTATCAAGCAGTTCTACGTCAACGTTGAG 966 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 721 TTGGTGAAGCGTGATGAGCTGACCCTTGAAGGTATCAAGCAGTTCTATGTCAACGTTGAG 780 Query 967 AAAGAAGAGTGGAAGCTCGAGACACTCTGTGATCTCTACGAGACTCTTGCCATCACTCAG 1026 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 781 AAAGAAGAGTGGAAGCTCGAGACACTTTGTGATCTCTACGAGACTCTGGCCATCACTCAG 840 Query 1027 AGTGTCATCTTCGTGAACACCAGGCGTAAGGTTGATTGGCTCACAGACAAAATGAGAAGC 1086 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 AGTGTCATCTTCGTGAACACCAGGCGTAAGGTTGATTGGCTCACAGACAAAATGAGAAGC 900 Query 1087 CGTGACCACACAGTCTCTGCAACTCACGGAGACATGGACCAGAACACCAGGGACATCATC 1146 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 901 CGTGACCACACAGTCTCTGCAACTCACGGAGACATGGACCAGAACACCAGAGACATCATC 960 Query 1147 ATGAGAGAGTTCAGGTCTGGTTCCTCCCGTGTTCTCATCACCACTGACCTCTTAGCTCGT 1206 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 961 ATGAGAGAGTTCAGGTCTGGTTCCTCCCGTGTTCTCATCACCACTGACCTCTTGGCTCGT 1020 Query 1207 GGTATTGATGTCCAACAAGTCTCCCTGGTTATCAACTTCGATCTCCCAACTCAGCCAGAG 1266 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1021 GGTATTGATGTTCAACAAGTCTCTCTGGTTATCAACTTCGATCTCCCAACTCAGCCAGAG 1080 Query 1267 AACTACCTTCACCGTATCGGAAGAAGTGGAAGGTTCGGGAGAAAGGGTGTTGCGATCAAT 1326 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1081 AACTACCTCCACCGTATCGGAAGAAGTGGAAGGTTCGGGAGAAAGGGTGTGGCGATCAAT 1140 Query 1327 TTCGTGACCCGTGATGATGAGAGGATGCT 1355 || |||||||| |||||||| |||||||| Sbjct 1141 TTTGTGACCCGCGATGATGACAGGATGCT 1169 > Ahg914623 jgi|Araly1|914623|Al_scaffold_0001_4877 Length=1239 Score = 1461 bits (791), Expect = 0.0 Identities = 1048/1174 (89%), Gaps = 10/1174 (1%) Strand=Plus/Plus Query 187 ATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTC 246 ||||||||||||||| ||||||| ||||| |||||| | ||||||||||||||||| || Sbjct 1 ATGGCAGGATCTGCAGCAGAAGGTACACAATTTGATACGCGTCAGTTTGACCAGAAGCTG 60 Query 247 AATGAAGTACTTGAGGGACAAGATGAGTTCTTCACATCCTATGATGATGTTCATGAGAGC 306 ||||||||||| |||||||| |||||||||||||| || |||||||| || ||||||||| Sbjct 61 AATGAAGTACTCGAGGGACAGGATGAGTTCTTCACCTCATATGATGAGGTCCATGAGAGC 120 Query 307 TTTGATGCCATGGGTCTT-CAAGAGAACCTTCTCAGGGGTATTTATGCTTATGGTTTTGA 365 ||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| || Sbjct 121 TTTGATGCCATGGGT-TTGCAAGAGAACCTTCTCAGGGGTATCTATGCTTATGGTTTCGA 179 Query 366 GAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCCTTCTGTAAGGGTCTTGATGTGAT 425 ||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||| Sbjct 180 AAAGCCTTCTGCTATTCAGCAAAGAGGAATTGTACCCTTTTGCAAGGGTCTTGATGTGAT 239 Query 426 TCAACAGGCTCAGTCTGGTACTGGGAAAACAGCAACTTTCTGCTCTGGTGTCTTGCAGCA 485 || ||||| |||||||||||||| ||||| || |||||||||||||||||||||||||| Sbjct 240 CCAGCAGGCACAGTCTGGTACTGGAAAAACCGCCACTTTCTGCTCTGGTGTCTTGCAGCA 299 Query 486 GCTGGACTTCT-CCCTTATCCAGTGTCAGGCTTTGGTTCTAGCTCCAACTAGAGAGCTTG 544 ||| ||| | | ||||| ||||||| |||||| | ||| | ||||| || |||||||||| Sbjct 300 GCTTGAC-TATACCCTTGTCCAGTGCCAGGCTCTCGTTTTGGCTCCCACCAGAGAGCTTG 358 Query 545 CTCAGCAAATTGAGAAGGTCATGAGGGCCCTTGGTGATTACCTTGGTGTCAAGGTTCACG 604 ||||||| ||||||||||||||| | |||||||||||||||| || ||||| ||||| | Sbjct 359 CTCAGCAGATTGAGAAGGTCATGCGTGCCCTTGGTGATTACCAAGGCGTCAAAGTTCATG 418 Query 605 CCTGTGTTGGTGGAACCAGTGTCCGTGAGGATCAGCGCATCCTCCAAGCTGGTGTCCATG 664 ||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||| Sbjct 419 CCTGTGTTGGTGGAACCAGCGTCCGTGAGGATCAGCGCATTCTCCAGGCTGGTGTTCATG 478 Query 665 TTGTTGTTGGAACTCCAGGGCGTGTCTTTGACATG-TT-GAAGAGGCAGTCTCTTCGTGC 722 |||| ||||||||||| || ||||| ||||||||| || ||||| || |||||||| | Sbjct 479 TTGTGGTTGGAACTCCCGGTCGTGTGTTTGACATGCTTAGAAGA--CAATCTCTTCGCCC 536 Query 723 TGACAACATCAAGATGTTTGTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAA 782 ||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 537 TGATTGCATCAAGATGTTTGTCCTTGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAA 596 Query 783 GGACCAGATCTATGACATATTCCAGCTTCTTCCACCAAAGATCCAAGTTGGTGTGTTCTC 842 ||| |||||||||||||||||||||||||| ||||||||||| || ||||| |||||||| Sbjct 597 GGATCAGATCTATGACATATTCCAGCTTCTCCCACCAAAGATTCAGGTTGGAGTGTTCTC 656 Query 843 CGCAACAATGCCACCAGAAGCTCTTGAGATCACAAGGAAGTTCATGAGCAAGCCAGTGAG 902 ||||| ||||| || |||||||| |||||||||||||| ||||||||||| |||||||| Sbjct 657 AGCAACGATGCCTCCGGAAGCTCTGGAGATCACAAGGAAATTCATGAGCAAACCAGTGAG 716 Query 903 AATCTTGGTGAAGCGTGATGAGCTTACCCTTGAAGGTATCAAGCAGTTCTACGTCAACGT 962 |||||||||||| ||||||||||| || ||||||||||||||||| |||||||| ||||| Sbjct 717 AATCTTGGTGAAACGTGATGAGCTCACACTTGAAGGTATCAAGCAATTCTACGTGAACGT 776 Query 963 TGAGAAAGAAGAGTGGAAGCTCGAGACACTCTGTGATCTCTACGAGACTCTTGCCATCAC 1022 |||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||| Sbjct 777 GGAGAAAGAAGAGTGGAAGCTCGAGACTCTCTGCGATCTCTATGAGACTCTAGCCATCAC 836 Query 1023 TCAGAGTGTCATCTTCGTGAACAC-CAGGCGTAAGGTTGATTGGCTCACAGACAAAATGA 1081 ||||||||||||||| || ||||| | | || ||||| || ||||||||||||||||||| Sbjct 837 TCAGAGTGTCATCTTTGTCAACACTC-GTCGCAAGGTCGACTGGCTCACAGACAAAATGA 895 Query 1082 GAAGCCGTGACCACACAGTCTCTGCAACTCACGGAGACATGGACCAGAACACCAGGGACA 1141 |||||||||||||||||||||| |||||||| |||||||||||||| ||||| || |||| Sbjct 896 GAAGCCGTGACCACACAGTCTCAGCAACTCATGGAGACATGGACCAAAACACAAGAGACA 955 Query 1142 TCATCATGAGAGAGTTCAGGTCTGGTTCCTCCCGTGTTCTCATCACCACTGACCTCTTAG 1201 ||||||||||||| |||||||||||||| || |||||||| ||||| || || ||||| | Sbjct 956 TCATCATGAGAGAATTCAGGTCTGGTTCTTCTCGTGTTCTAATCACGACCGATCTCTTGG 1015 Query 1202 CTCGTGGTATTGATGTCCAACAAGTCTCCCTGGTTATCAACTTCGATCTCCCAACTCAGC 1261 |||||||||||||||| || |||||||| ||||| || ||||| || ||||||||||||| Sbjct 1016 CTCGTGGTATTGATGTGCAGCAAGTCTCTCTGGTCATAAACTTTGACCTCCCAACTCAGC 1075 Query 1262 CAGAGAACTACCTTCACCGTATCGGAAGAAGTGGAAGGTTCGGGAGAAAGGGTGTTGCGA 1321 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 1076 CAGAGAATTACCTTCACCGTATCGGAAGAAGTGGAAGGTTCGGGAGAAAGGGTGTGGCCA 1135 Query 1322 TCAATTTCGTGACCCGTGATGATGAGAGGATGCT 1355 | || |||||||| ||||||||||| || ||||| Sbjct 1136 TTAACTTCGTGACTCGTGATGATGATAGAATGCT 1169 > Ahg908883 jgi|Araly1|908883|Al_scaffold_0002_1964 Length=1245 Score = 955 bits (517), Expect = 0.0 Identities = 900/1084 (83%), Gaps = 30/1084 (3%) Strand=Plus/Plus Query 285 CTATGATGATGTTCATGAGAGCTTTGATGCCATGGGTCTT-CAA-GAGAACCTTCTCAGG 342 |||||| || ||| || ||||||||||| || || || || || | ||||| ||| Sbjct 105 CTATGACGAAGTTTGCGATAGCTTTGATGCAAT-GGAATTGAAACCAG-ATCTTCTTAGG 162 Query 343 GGTATTTATGCTTATGGTTTTGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATCGTCCCC 402 |||||||||||||||||||||||||||||||||||||||||||| |||||||| | || Sbjct 163 GGTATTTATGCTTATGGTTTTGAGAAGCCTTCTGCTATTCAGCAGAGAGGAATTATTCCA 222 Query 403 TTCTGTAAGGGTCTTGATGTGATTCAACAGGCTCAGTCTGGTACTGGGAAA-ACAGCAAC 461 ||||| |||||||||||||| || || || ||||| ||||| ||||| ||| || || || Sbjct 223 TTCTGCAAGGGTCTTGATGTCATCCAGCAAGCTCAATCTGGAACTGG-AAAGACCGCTAC 281 Query 462 -TTTCTGCTCTGGTGTCTTGCAGCAGCTGGACT-TCTCCCTTA-TCCAGTGTCAGGCT-T 517 ||| ||||||||||| || |||||||| || | | | || | || || || ||| | Sbjct 282 CTTT-TGCTCTGGTGTTTTACAGCAGCTCGA-TAT-TAGTTTGGTTCAATGCCAAGCTCT 338 Query 518 TGGTTCTAGCTCCAACTAGAGAGCTTGCTCAGCAAATTGAGAAGGTCATGAGGGCCCTTG 577 || || | ||||| || |||| ||||| ||||||||||| ||||| |||||||| |||| Sbjct 339 TGTTT-TGGCTCCTACCCGAGAACTTGCCCAGCAAATTGAAAAGGTTATGAGGGCACTTG 397 Query 578 GTGATTACCTTGGTGTCAAGGTTCACGCCTGTGTTGGTGGAACCAGTGTCCGTGAGGATC 637 |||| || ||||| ||||||| ||| || |||||||||||||| ||||| |||||||||| Sbjct 398 GTGACTATCTTGGCGTCAAGGCTCAGGCTTGTGTTGGTGGAACTAGTGTTCGTGAGGATC 457 Query 638 AGCGCATCCTCCAAG-CTGGTGTCCATGTTGTTGTTGGAACTCCAGGGCGTGTCTTTGAC 696 | ||| | || || | ||||||| ||||||||||||||||| || || |||||||||||| Sbjct 458 AACGCGTTCTTCA-GTCTGGTGTTCATGTTGTTGTTGGAACCCCTGGTCGTGTCTTTGAC 516 Query 697 ATGTTGAAG-AGGCAGTCTCTTCGTGCTGA--CAACATCAAGATGTTTGTTCTCGATGAA 753 ||||| | || || || || || ||||| ||| |||| ||||||||||| |||||| Sbjct 517 TTGTTGC-GTAGACAATCCCTCCGCGCTGATGCAA--TCAAAATGTTTGTTCTTGATGAA 573 Query 754 GCTGATGAAATGCTCTCCCGTGGTTTCAAGGACCAGATCTATGACATATTCCAGCTTCTT 813 ||||||||||||||||| |||||||||||||| ||||| || ||||| |||||||||||| Sbjct 574 GCTGATGAAATGCTCTCTCGTGGTTTCAAGGATCAGATATACGACATCTTCCAGCTTCTT 633 Query 814 CCA-CCAAAGATCCAAGTTGGTGTGTTCTCCGCAACAATGCCACCAGAAGCTCTTGAGAT 872 || |||| | || | || ||||| ||||| || ||||||||||| ||||| |||||||| Sbjct 634 CCTTCCAAGGTTC-AGGTCGGTGTTTTCTCTGCTACAATGCCACCCGAAGCCCTTGAGAT 692 Query 873 CACAAGGAAGTTCATGAGCAAGCCAGTGAGAAT-CTTGGTGAAGCGTGATGAGCTTACCC 931 |||||||||||| |||| ||| ||||| || || || ||| ||||| || ||||| || | Sbjct 693 CACAAGGAAGTTTATGAACAAACCAGTCAGGATTCT-GGTCAAGCGAGACGAGCTGACTC 751 Query 932 TTGAAGGTATCAAGCAGTTCTACGTCAACGTTGAGAAAGAAGAGTGGAAGCTCGAGACAC 991 | |||||||| |||||||| || ||||| || || || ||||||||||| |||||||||| Sbjct 752 TGGAAGGTATTAAGCAGTTTTATGTCAATGTAGACAAGGAAGAGTGGAAACTCGAGACAC 811 Query 992 TCTGTGATCTCTACGAGACTCTTGCCATCACTCAGAGTGTCATCTTCGTGAACACCAGGC 1051 | ||||||||||||||||| || |||||||| || ||||||||||| |||||||| |||| Sbjct 812 TATGTGATCTCTACGAGACACTGGCCATCACGCAAAGTGTCATCTTTGTGAACACAAGGC 871 Query 1052 GTAAGGTTGATTGGCTCACAGACAAAATGAGAAGCCGTGACCACACAGTCTCTGCAACTC 1111 |||||||||||||||| || |||||||||||||||||||||||||| ||||| || || | Sbjct 872 GTAAGGTTGATTGGCTAACCGACAAAATGAGAAGCCGTGACCACACTGTCTCAGCCACAC 931 Query 1112 ACGGAGACATGGACCAGAACACCAGGGACATCATCATGAGAGAGTTCAGGTCTGGTTCCT 1171 |||||||||||||||||||||| || |||||||||||| | || ||| | ||||| || | Sbjct 932 ACGGAGACATGGACCAGAACACAAGAGACATCATCATGCGCGAATTCCGCTCTGGATCTT 991 Query 1172 CCCGTGTTCTCATCACCACTGACCT-CTTAGCTCGTGGTATTGATGTCCAACAAGTCTCC 1230 |||| || ||||| ||||||||||| ||| ||||||||||||||||| || |||||||| Sbjct 992 CCCGCGTCCTCATAACCACTGACCTTCTT-GCTCGTGGTATTGATGTTCAGCAAGTCTCT 1050 Query 1231 CTGGTTATCAACTTCGATCTCCCAACTCAGCCAGAGAACTACCTTCACCGTATCGGAAGA 1290 || || || ||||| || |||||||| || || ||||| |||||||||||||| |||||| Sbjct 1051 CTTGTCATAAACTTTGACCTCCCAACCCAACCGGAGAATTACCTTCACCGTATTGGAAGA 1110 Query 1291 AGTGGAAGGTTCGGGAGAAAGGGTGTTGCGATCAATTTCGTGACC-CGTGATGATGAGAG 1349 ||||||||||| || |||||||| || || ||||||||| |||| || || |||||||| Sbjct 1111 AGTGGAAGGTTTGGAAGAAAGGGAGTGGCAATCAATTTCATGACAACG-GAGGATGAGAG 1169 Query 1350 GATG 1353 ||| Sbjct 1170 AATG 1173 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66200845810 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5