BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13930.1
Length=2147
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478800 jgi|Araly1|478800|fgenesh2_kg.3__1501__AT3G13930.1 3236 0.0
Ahg914615 jgi|Araly1|914615|Al_scaffold_0001_4869 1280 0.0
> Ahg478800 jgi|Araly1|478800|fgenesh2_kg.3__1501__AT3G13930.1
Length=2051
Score = 3236 bits (1752), Expect = 0.0
Identities = 1939/2027 (96%), Gaps = 21/2027 (1%)
Strand=Plus/Plus
Query 83 ATCATCATCAAATCCCAGCTTTCTTCCAAGTGATCCTTCACTCTCTATACTGCGATTTAC 142
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 44 ATCATCATCAAATCCCAGC-TTCTTCCAAGTGATCCTTCACTCTCTAGGCTGCGATTTGG 102
Query 143 CGTTCTTC-TGACTCTTGTTGCGAATTCGGATCGGC-TGACGCAGCTCCGATTGCACAAC 200
|||||||| | || || | | | || || | | |||||||||||||||||| |
Sbjct 103 CGTTCTTCGTAAC-ATTCTCACCATTTTTTATTTTCAT-TCGCAGCTCCGATTGCACAGC 160
Query 201 AATGGCTTCTCGTATCATCAATCATTCCAAAAAGTTGAAACATGTTTCCGCTTTACTGCG 260
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 161 AATGGCTTCTCGTATCATTAATCATTCCAAAAAGTTGAAACATGTTTCTGCTTTACTGCG 220
Query 261 GCGTGACCATGCTGTGGCAGTCCGCTGTTTCTCCAACAGTACCCACCCCTCTCTCGTTGG 320
|||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| ||||
Sbjct 221 GCGTGACCATGCTGTGGCTGTCCGCTGTTTCTCCAACAGTAGCCAGCCCTCTCTCATTGG 280
Query 321 AAGAGAAGATATCTTCAAGGCCCGCCTGAATTATTCCTCTGTAGAGAGAATTTCAAAATG 380
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 AAAAGAAGATATCTTCAAGGCCCGCCTGAATTATTCCTCTGTAGAGAGAATTTCAAAATG 340
Query 381 TGGTACTGGCAATGTAACAATGCTTAGTGGTATTTCAACAACGAGCACAAAACTAAGCAG 440
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 341 TGGTACTGGCAATGTAACAATGCTTAGTGGTATTTCAACAACGAGCACGAAACTAAGCAG 400
Query 441 CCCAATGGCAGGACCAAAACTATTTAAAGAATTTATAAGCTCCCAGATGCGATCAGTGAG 500
| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 401 CACAATGGCAGGACCAAAACTATTTAACGAATTTCTAAGCTCCCAGATGCGATCAGTGAG 460
Query 501 AGGATTTTCATCCAGTTCAGATCTTCCTCCTCATCAAGAGATTGGAATGCCTTCTCTTTC 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 AGGATTTTCATCCAGTTCAGATCTTCCTCCTCATCAAGAGATTGGAATGCCTTCTCTTTC 520
Query 561 GCCAACAATGACTGAGGGTAACATTGCCAGGTGGCTGAAGAAAGAAGGTGATAAAGTTGC 620
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 521 GCCAACAATGACTGAGGGTAACATTGCCAGGTGGCTGAAGAAAGAGGGTGATAAAGTTGC 580
Query 621 TCCTGGTGAAGTGCTTTGTGAAGTTGAAACTGACAAAGCAACAGTCGAAATGGAATGCAT 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 581 TCCTGGTGAAGTGCTTTGTGAAGTTGAAACTGACAAAGCAACAGTCGAAATGGAATGTAT 640
Query 681 GGAAGAGGGTTTTCTCGCCAAGATAGTAAAGGAGGAGGGGGCAAAAGAAATTCAAGTTGG 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 GGAAGAGGGTTTTCTCGCCAAGATAGTAAAGGAGGAGGGGGCAAAAGAAATTCAAGTTGG 700
Query 741 GGAGGTGATTGCTATCACAGTTGAAGATGAAGATGATATTCAAAAGTTTAAAGATTACAC 800
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 701 GGAGGTGATTGCTATCACAGTTGAAGATGAAGAGGATATTCAAAAGTTTAAAGATTACAC 760
Query 801 ACCCTCATCCGATACTGGTCCCGCTGCGCCTGAAGCAAAACCAGCTCCTTCCCTACCAAA 860
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 761 ACCCTCATCCGGTACTGGTCCCGCTGCGCCTGAAGCAAAACCAGCTCCTTCCCCACCAAA 820
Query 861 GGAAGAGAAGGTAGAGAAGCCAGCCAGTGCTCCTGAAGCCAAGATCTCTAAGCCAAGCTC 920
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 821 GGAAGAGAAGGTAGAGAAGCCAGCCAGTGCTCCTGAAGCCAAGATATCTAAGCCAAGCTC 880
Query 921 AGCTCCTTCAGAAGATCGTATTTTTGCCAGTCCTCTTGCAAGAAAGTTGGCTGAAGATAA 980
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 GGCTCCTTCAGAAGATCGTATTTTTGCCAGTCCTCTTGCAAGAAAGTTGGCTGAAGATAA 940
Query 981 TAATGTACCTCTCTCAAGCATTAAAGGCACAGGTCCTGAAGGACGGATAGTGAAGGCTGA 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 TAATGTACCTCTCTCAAGCATTAAAGGCACAGGTCCTGAAGGACGGATAGTGAAGGCTGA 1000
Query 1041 TGTCGAAGATTTCTTAGCTTCAGGCAGTAAAGAAACTACTGCCAAACCTTCCAAGCAAGT 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 TGTCGAAGATTTCTTAGCTTCAGGCAGTAAAGAAACTACTGCCAAACCTTCCAAGCAAGT 1060
Query 1101 GGATTCAAAGGTTCCAGCTCTTGACTATGTTGACATCCCTCACACTCAGATACGAAAGGT 1160
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1061 GGATTCAAAGGTTCCAGCTCTGGACTATGTTGACATACCTCACACTCAGATACGAAAGGT 1120
Query 1161 CACAGCCTCACGTTTGGCATTCTCAAAGCAAACTATTCCTCACTACTACTTGACCGTGGA 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 CACAGCCTCACGTTTGGCATTCTCAAAGCAAACTATTCCTCACTACTACTTGACCGTGGA 1180
Query 1221 TACATGTGTTGACAAAATGATGGGTCTTAGGAGTCAACTCAATTCATTTCAAGAGGCTTC 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 TACATGTGTTGACAAAATGATGGGTCTTAGGAGTCAACTCAATTCATTTCAAGAGGCTTC 1240
Query 1281 CGGTGGGAAAAGGATATCTGTAAATGATCTTGTTATTAAGGCTGCTGCACTGGCTCTTCG 1340
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 TGGTGGGAAACGGATATCTGTAAATGATCTTGTTATTAAGGCTGCTGCACTGGCTCTTCG 1300
Query 1341 AAAAGTTCCTCAGTGCAATAGTTCATGGACAGATGAATACATCCGCCAATTTAAAAATGT 1400
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1301 AAAAGTTCCTCAGTGCAATAGTTCATGGACAGACGAATACATCCGCCAATTTAAAAATGT 1360
Query 1401 GAACATCAATGTCGCTGTACAAACAGAAAATGGGCTCTACGTTCCTGTGGTCAAGGACGC 1460
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1361 GAACATCAATGTCGCTGTACAAACAGAAAATGGGCTCTATGTTCCTGTGGTCAAGGACGC 1420
Query 1461 GGACAAGAAAGGACTGTCTACAATTGGAGAAGAGGTTCGATTCTTGGCTCAAAAAGCAAA 1520
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 GGACAAGAAAGGACTGTCCACAATTGGAGAAGAGGTTCGATTCTTGGCTCAAAAAGCAAA 1480
Query 1521 AGAAAACAGCTTGAAGCCGGAAGATTATGAGGGAGGAACATTCACAGTCTCCAACCTGGG 1580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AGAAAACAGCTTGAAGCCGGAAGATTATGAGGGAGGAACATTCACAGTCTCCAACCTGGG 1540
Query 1581 GGGACCTTTTGGCATCAAACAGTTCTGTGCCGTCATCAATCCACCTCAAGCAGCCATTCT 1640
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1541 AGGACCTTTTGGCATCAAACAGTTCTGTGCCGTCATCAATCCACCTCAAGCCGCCATTCT 1600
Query 1641 AGCAATCGGATCTGCTGAAAAGAGAGTTGTTCCCGGTACTGGTCCAGACCAATACAACGT 1700
|||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1601 AGCAATTGGATCCGCTGAAAAGAGAGTTGTTCCCGGTGCTGGTCCTGACCAATACAACGT 1660
Query 1701 TGCTTCATACATGTCTGTAACACTAAGCTGTGACCACCGCGTAATAGATGGTGCAATTGG 1760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 TGCTTCATACATGTCTGTAACACTAAGCTGTGACCACCGCGTAATAGATGGTGCAATTGG 1720
Query 1761 AGCCGAGTGGCTGAAAGCATTCAAGGGCTACATCGAGACCCCAGAATCTATGTTGCTCTA 1820
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1721 AGCCGAGTGGCTGAAAGCATTCAAGGGATACATCGAGACCCCAGAATCTATGTTGCTGTA 1780
Query 1821 AAATTCAGACGCACACACACATCAAAAGCTAAACTCATAAGAGTCTTCTGACCTCAAATT 1880
|||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1781 AAATGCAGACGCACACACACATCAAA-GCTAAATTCATAAGAGTCTTCTGACCTCAAATT 1839
Query 1881 TCTTTCCCACAACATATTCTACCAGATTTGATCAGCAGTAGGCAATGGCCTTTAAAGTTG 1940
||||| ||||||||| || | | || || | ||||||||||||||||||||||
Sbjct 1840 TCTTTGCCACAACAT-TT-T-C-AG-------CA-C--TAGGCAATGGCCTTTAAAGTTG 1885
Query 1941 AGTGTTTTGCTATTCTTTAAATCATTGAGTTGACAGATTTTTGTCTCAAAATAAAATCAG 2000
|||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1886 CGTGTTTTGATATTCTTTATATCATTGAGTTGACATATTTTTGTCTCAAAATAAAATCAG 1945
Query 2001 GAATCCAACAATTTCACTGTGCACTTGTTTTTTGGCTTAATGCTTGTTCATCATGGGTTG 2060
|||||||||||||| |||||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 1946 GAATCCAACAATTTTACTGTGAACTGGATTTTTGGCTTAATGCTTGTTCATCATGGGTTG 2005
Query 2061 GCAAAATAAAACCCATTTACTTAATTTTATTAATCAACTCCAATAAA 2107
|||||||||||| |||| ||||| |||| ||||||| ||||||||||
Sbjct 2006 GCAAAATAAAACACATTCACTTA-TTTTGTTAATCACCTCCAATAAA 2051
Score = 82.4 bits (44), Expect = 1e-14
Identities = 44/44 (100%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 21 TGGTACATGTAAGGCAGCATTTTGCCATTTCTGAAAAACCTAAA 64
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGGTACATGTAAGGCAGCATTTTGCCATTTCTGAAAAACCTAAA 44
> Ahg914615 jgi|Araly1|914615|Al_scaffold_0001_4869
Length=1653
Score = 1280 bits (693), Expect = 0.0
Identities = 1077/1261 (85%), Gaps = 32/1261 (3%)
Strand=Plus/Plus
Query 577 GGTAACATTGCCAGGTGGCTGAAGAAAGAAGGTGATAAAGTTGCTCCTGGTGAAGTGCTT 636
|||| | |||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 409 GGTACCGTTGCCAGGTGGCTGAAAAAAGAAGGTGATAAAGTTGCTCCTGGGGAAGTACTC 468
Query 637 TGTGAAGTTGAAACTGACAAAGCAACAGTCGAAATGGAATGCATGGAAGAGGGTTTTCTC 696
|||||||||||||||||||||||||| || ||||||||||||||||||||||| | ||||
Sbjct 469 TGTGAAGTTGAAACTGACAAAGCAACCGTGGAAATGGAATGCATGGAAGAGGGATATCTC 528
Query 697 GCCAAGATAGTAAAGGAGGAGGGGGCAAAAGAAATTCAAGTTGGGGAGGTGATTGCTATC 756
|||||||| ||||||| |||||| |||||||||||||||| || ||||| ||||||||
Sbjct 529 GCCAAGATTGTAAAGGCGGAGGGTTCAAAAGAAATTCAAGTCGGCGAGGTAATTGCTATT 588
Query 757 ACAGTTGAAGATGAAGATGATATTCAAAAGTTTAAAGATTACACACCC-TCATCCGA-TA 814
||||||||||||||||| || ||| |||||| ||||||||||| ||| |||| | | |
Sbjct 589 ACAGTTGAAGATGAAGAGGACATTGGAAAGTTCAAAGATTACAC-CCCATCAT-CTACTG 646
Query 815 CTGGTCCCGCTGCGCCTGAAGCAAAACCAGCTCCTTCCCTACCAAAGGAAGAGAAGGTAG 874
||| | |||| | ||| ||||| ||||| ||||| ||| |||||||||||||||||| |
Sbjct 647 CTGATGTCGCTCCTCCTAAAGCAGAACCAACTCCTGCCCCACCAAAGGAAGAGAAGGTTG 706
Query 875 AGA-AGCCAGCCAGT-G-CTCCTGAAGC-CAA-GATCTCTAAGCCAAGC-TCAGCTCCTT 928
| | ||||| || | | |||||||| | || | | || ||||| ||| | | ||||
Sbjct 707 A-ACAGCCA-TCA-TCGCCTCCTGAA-CTGAAGGCT-TCCAAGCCTAGCGT-ACCTCCCA 760
Query 929 CAGAAGATCGTATTTTTGCCAGTCCTCTTGCAAGAAAGTTGGCTGAAGATAATAATGTAC 988
||| ||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 761 CAGGAGATCGTGTTTTTGCTAGTCCTCTTGCAAGAAAGTTGGCTGAAGATAAGAATGTGC 820
Query 989 CTCTCTCAAGCATTAAAGGCACAGGTCCTGAAGGACGGATAGTGAAGGCTGATGTCGAAG 1048
||||| ||| ||| ||||||||||||||||||||||| ||||||||||| ||| |||| |
Sbjct 821 CTCTCGCAAACATCAAAGGCACAGGTCCTGAAGGACGAATAGTGAAGGCAGATATCGATG 880
Query 1049 ATT-TCTTAGCTTCAGGCAGTAAAGAAACTACTGCCAAACCTTCCAAG-CAAGTGGATTC 1106
| | | ||||||||| | |||||| | ||| ||| || || || ||| ||| || ||||
Sbjct 881 AGTAT-TTAGCTTCAAGTGGTAAAGGAGCTATTGCGAAGCCATCTAAGTCAACTG-ATTC 938
Query 1107 AAAGGTTCCAGCTCTTG-ACTATGTTGACATCCCTCACACTCAGATACGAAAGGTCACAG 1165
|| | |||||| ||| ||||||||||| |||||| |||||||||||||||||||||
Sbjct 939 TAATGCCCCAGCT-TTGGACTATGTTGACGCCCCTCATTCTCAGATACGAAAGGTCACAG 997
Query 1166 CCTCACGTTTGGCATTCTCAAAGCAAACTATTCCTCACTACTACTTGACCGTGGATACAT 1225
| |||||||| |||||||||||||||||||| |||||||| ||||| ||||| |||||||
Sbjct 998 CATCACGTTTAGCATTCTCAAAGCAAACTATCCCTCACTATTACTTAACCGTCGATACAT 1057
Query 1226 GTGTTGACAAAATGATGGGTCTTAGGAGTCAACTCAATTCATTTCAAGAGGCTTCCGGTG 1285
||||||| ||| | |||||||| |||||||| || |||||||| | ||||||||| ||||
Sbjct 1058 GTGTTGATAAACTTATGGGTCTGAGGAGTCAGCTTAATTCATTCCGAGAGGCTTCTGGTG 1117
Query 1286 GGAAAAGGATATCTGTAAATGATCTTGTTATTAAGGCTGCTGCACTGGCTCTTC-GAAAA 1344
||||| |||||||||| |||||||||||| |||||||||||||| | ||||| | |||||
Sbjct 1118 GGAAACGGATATCTGTCAATGATCTTGTTGTTAAGGCTGCTGCATTAGCTCT-CAGAAAA 1176
Query 1345 GTTCCTCAGTGCAATAGTTCATGGACAGATGAATACATCCGCCAATTTAAAAATGTGAAC 1404
|||||||||||||||||||||||||| || || ||||||||||| |||||||||||||||
Sbjct 1177 GTTCCTCAGTGCAATAGTTCATGGACTGACGATTACATCCGCCAGTTTAAAAATGTGAAC 1236
Query 1405 ATCAATGTCGCTGTACAAACAGAAAATGGGCTCTACGTTCCTGTGGTCAAGGACGCGGAC 1464
||||| ||||| || || |||||||| ||||| || || ||||| || ||||| || |||
Sbjct 1237 ATCAACGTCGCAGTGCAGACAGAAAACGGGCTGTATGTCCCTGTTGTGAAGGATGCAGAC 1296
Query 1465 AAGAAAGGACTGTCTACAATTGGAGAAGAGGTTCGATTCTTGGCTCAAAAAGCAAAAGAA 1524
||||| || ||||| |||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 1297 AAGAAGGGTCTGTCCACAATTGGAGAAGAAGTTCGGTTATTGGCTCAAAAAGCAAAAGAG 1356
Query 1525 AACAGCTTGAAGCCGGAAGATTATGAGGGAGGAACATTCACAGTCTCCAACCTGGGGGGA 1584
|||||||| ||||| ||||||||||||||||||||||| || ||||| ||| |||| |||
Sbjct 1357 AACAGCTTAAAGCCAGAAGATTATGAGGGAGGAACATTTACGGTCTCTAACTTGGGAGGA 1416
Query 1585 CCTTTTGGCATCAAA-CAGTTCTGTGCCGTCATCAATCCACCTCAAGCAGCCATTCTAGC 1643
||||||||||| ||| || || ||||| ||| | |||||||||||||| |||||||||||
Sbjct 1417 CCTTTTGGCAT-AAAGCAATTTTGTGCAGTCGTTAATCCACCTCAAGCCGCCATTCTAGC 1475
Query 1644 AATCGGATCTGCTGAAAAGAGAGTTGTTCCC-GGTA-CTGGTCCAGACCAATACAACGTT 1701
| | |||||||||| |||||||||||| ||| |||| | || ||||| |||| |||| ||
Sbjct 1476 AGTTGGATCTGCTGGAAAGAGAGTTGT-CCCTGGTAAC-GGACCAGATCAATTCAACTTT 1533
Query 1702 GCTTCATACATGTCTGTAACACTAAGCTGTGACCACCGCGTAATAGATGGTGCAATTGGA 1761
|| || |||||| |||| ||||| ||||||||||| |||||| |||| ||||| ||||||
Sbjct 1534 GCCTCTTACATGCCTGTTACACTGAGCTGTGACCATCGCGTAGTAGACGGTGCCATTGGA 1593
Query 1762 GCCGAGTGGCTGAAAGCATTCAAGGGCTACATCGAGA-CCCCAGAATCTATGTTGCTCTA 1820
|| |||||| |||||||||| ||||| |||||||||| |||| |||||||||||||||||
Sbjct 1594 GCTGAGTGGTTGAAAGCATTTAAGGGATACATCGAGAACCCC-GAATCTATGTTGCTCTA 1652
Query 1821 A 1821
|
Sbjct 1653 A 1653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80789409645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5