BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13940.1
Length=1558
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929163 jgi|Araly1|929163|scaffold_301620.1 1873 0.0
> Ahg929163 jgi|Araly1|929163|scaffold_301620.1
Length=1374
Score = 1873 bits (1014), Expect = 0.0
Identities = 1247/1360 (92%), Gaps = 14/1360 (1%)
Strand=Plus/Plus
Query 55 GAATCC-AAACCTCAGTAGCCATGGAAGGCGAAGAGAAGAATGATTATAGAAACGA-G-- 110
|||||| ||| |||| | |||||||||||||||| |||||||| |||||||||| |
Sbjct 1 GAATCCAAAAGCTCAACAACCATGGAAGGCGAAGACAAGAATGAGCATAGAAACGAGGAA 60
Query 111 GAAGAAGATTTCAATACACCACAACAACTACAAAAGAAGCAAAGGAAAGGGaaaaaaaTA 170
|||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| |||||
Sbjct 61 GAAGAAGAGTTCAATACACCACAACAACTAGAAAAGAAGCAAAGGAAAGGCAAAGAAATA 120
Query 171 GCAACGGAAACAGAGGATGAAAACGAAGAAGACAAGAGAGTTACTCTCAAAGTCACGCAA 230
||| |||||||||||||| |||||||||||||||||||| |||| ||||||||||| |||
Sbjct 121 GCATCGGAAACAGAGGATCAAAACGAAGAAGACAAGAGAATTACACTCAAAGTCACTCAA 180
Query 231 GTCGCCGAGAGACCCGATAGAATCTCTCCGATCGTCGCCTATTTCTCTACAGGATACGAT 290
||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GTCTCCGAGAGACCGGATAGAATCTCTCCGATCGTCGCCTACTTCTCTACAGGATACGAT 240
Query 291 CCTTGTAAAGTAGATCCAAAAACAGGCAAGAGAGTTCATGAAACTCCCAAGGTTACTGTT 350
|||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 CCTTGTAAGGTAGATCCAGAAACAGGCAAGAGAGTTCATGAAACTCCCAAAGTTACTGTT 300
Query 351 TACAAGCATAAGGATGATTCTAAGAAGAGGATTCAGGTTGTTGTAAGTCCTCCAGGCGCA 410
|| ||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||
Sbjct 301 TATAAGCATAAGGATGATTCGAAGAAGAGGATTCAGGTTGTGGTTAGTCCTCCAGGGGCA 360
Query 411 AGAGTTGAGTTCGTCGGAACTAATTACACAGGCGAGCAAGCTGCTATGCAGACGAATACT 470
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 AGAGTTGAGTTCGTCGGAACTAATTACACCGGCGAGCAAGCTGCTATGCAGACGAATACC 420
Query 471 TATAGAGTTGGTGTTTTTAATAGAGAGGCTAAAACTTTGAGGATTCTTCCTGTTGCTCAC 530
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 TATAGAGTTGGTGTTTTCAATAGAGAGGCTAAGACTTTGAGGATTCTTCCTGTTGCTCAC 480
Query 531 AATAAGATAATCAGATTGGAGCCTAGAGTTAAAGCTCAAGAAACAAATGAGGAAGAAGCT 590
||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| |
Sbjct 481 AATAAGATAATCAGATTGGAGCCTAAAGTTAAAGCTCAAGAAACAATTGAGGAAAAAGAT 540
Query 591 TCAGGAAGTGCTGTCGTCAAAGAACTTGA-AGAACTAAAAACAGGAGAACGCGATCGTTA 649
||||||||||| || || ||||||||| | |||| | |||||||| ||||| |||||
Sbjct 541 TCAGGAAGTGCGGTTGTTGAAGAACTTGGCA-AACTTACCACAGGAGATCGCGACCGTTA 599
Query 650 TAATACaaaaaaaGCTGTTACTCGGGATAAGAAGAAGCGTGCCTTATATATGGGAGATGA 709
||||||||| || |||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 600 TAATACAAAGAAGGCTGTTACTCGGGACAAGAAGAAGCGTGCCTTAAATATGGGAGATGA 659
Query 710 TGCTGCGACTCAGAAGGTCCTTGATGGGAAACTAAGTGAGTTAGGTGTTAACACAGCTGC 769
||| | |||||||||| ||||||| |||||||| ||| ||||| |||||||||||||||
Sbjct 660 TGCCGAGACTCAGAAGTTCCTTGACGGGAAACTTGGTGTGTTAGATGTTAACACAGCTGC 719
Query 770 TCTTGAAGGCACCAGTTCTACTGTTGCACGCAACATTCCTCCTTACAATACCGCTGCAAC 829
||||||| ||||||||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 720 TCTTGAAAGCACCAGTTCTACTGTTGCACGCAACATTCCTCCTTATGATGCCGCTGCGAC 779
Query 830 GACTGCAAATGAAGCTTATCCCTTAGAAAAGATCATTGAAAAGGGGGATTGGAGTTTTCT 889
|||| |||| ||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 780 GACTCCAAAGGAAGCTTATCCCTTAGAAAAGATCATTGAAAAGGGCGAGTGGAGTTTCCT 839
Query 890 TGAAGATATTTACTGGCTTCTGCAACAGGAAACTGAAGCAGCAACTGAGGCTTACCCTGT 949
|||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||
Sbjct 840 TGAAGATATTTACTGGCTTCTGGAACAGGGAACTGAAGCAGCAACTGATGCTTACCCTGT 899
Query 950 ATTTGTCCGCAACAGATTGTACA-GATTGCGAGATATCAAGGACGATATGAAAAAGCAGA 1008
|||||| ||||||||||||| || | | ||| ||||||||||||||||||||||||||||
Sbjct 900 ATTTGTTCGCAACAGATTGTTCAAGCT-GCGTGATATCAAGGACGATATGAAAAAGCAGA 958
Query 1009 CGGTTTGTGGTGC-TGCAACGCTTCTCACCCATCTGGTTAAGTTCAAGGACAGAAACTCA 1067
|||| | |||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CGGTCTCTGGTGCGTT-AACGCTTCTCACCCATCTGGTTAAGTTCAAGGACAGAAACTCA 1017
Query 1068 ATGAATGGTTACGATTCCGCTAAAGACCACAAGATGCCAGACATCTTCCGTCAA-AAATT 1126
|||||||||| ||||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 1018 ATGAATGGTTTCGATTCCGCTAAAAACCACAAGATGCCAGACATCTTCCGT-AGGAAATT 1076
Query 1127 -CAACAGCATGTTCAAGGATTCTGAATCAGATAGGATACCTGTTGACAAGATCAACCTTC 1185
|| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1077 TCAG-AGCATGTTCAAGGATTCTGAATCAGAGAGGATACCTGTTGACAAGGCCAACCTTC 1135
Query 1186 TGATAAGCTACGTTCTTGTGCTATCCCTTCACGTGGATAATTTCATGACCGATCCAGAAG 1245
|||||||||||||||||||| |||| ||||| ||||||||||||| ||||||||||||||
Sbjct 1136 TGATAAGCTACGTTCTTGTGTTATCTCTTCATGTGGATAATTTCAAGACCGATCCAGAAG 1195
Query 1246 ACATAGCAAAAGATCTGAGGATAAGCACAGTTGAGCTGAGGAAACATTTTCTACAGCTTG 1305
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1196 ATATAGCAAAAGATCTGAGGATAAGCACAGTTGAGCTGAGGAAACATTTTCAACAGCTTG 1255
Query 1306 GCTGCAAATTCCTGAAGCAGAATTCTACTACGGTTGCTACCTTACCGACCCCTCTCAATT 1365
||||||||||| ||||||||||||| ||| |||||| ||||||||||| ||||||||||
Sbjct 1256 GCTGCAAATTCGTGAAGCAGAATTCAACTTTGGTTGCGACCTTACCGACTCCTCTCAATT 1315
Query 1366 TCCCGGAGGTTAACCGGAGGCGCAGGGCACGAAAGTGATG 1405
|||||||||||||||||||||| | | |||||||||||||
Sbjct 1316 TCCCGGAGGTTAACCGGAGGCGGAAGACACGAAAGTGATG 1355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58354255340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5