BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13960.1
Length=1576
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478803 jgi|Araly1|478803|fgenesh2_kg.3__1504__AT3G13960.1 2374 0.0
> Ahg478803 jgi|Araly1|478803|fgenesh2_kg.3__1504__AT3G13960.1
Length=1590
Score = 2374 bits (1285), Expect = 0.0
Identities = 1509/1608 (94%), Gaps = 51/1608 (3%)
Strand=Plus/Plus
Query 1 GAAAGTGGTCATCTTTGTCTGTCTCTGTCCGAAACTCAGGAGCCCTAATCTCTGAATCCA 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAGGTGGTCATCTTTGTCTGTCTCTGTCCGAAACTCAGGAGCCCTAATCTCTGAATCCA 60
Query 61 TCAAGAAAGCTCTTTCTCTTCCTTCTTTTATGCTTCTGAATTTGCTAC--ATAT--ATAA 116
|||||||||||| || |||||||||||||||| |||||| |||||||| |||| ||||
Sbjct 61 TCAAGAAAGCTC-TTATCTTCCTTCTTTTATGTTTCTGATTTTGCTACATATATAAATAA 119
Query 117 ACTATCTGAAGAAAGCTAGAGAATAAGATGATGAGTCTAAGTGGAAGTAGCGGGAGAACA 176
|| ||||| ||||||||||||| ||||||||||||||| |||||||||| |||||||||
Sbjct 120 ACCCTCTGAGGAAAGCTAGAGAAGAAGATGATGAGTCTAGGTGGAAGTAGTGGGAGAACA 179
Query 177 ATAGGAAGGCCTCCATTTACACCAACACAATGGGAAGAACTGGAACATCAAGCCCTAATC 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATAGGAAGGCCTCCATTTACACCAACACAATGGGAAGAACTGGAACATCAAGCCCTAATC 239
Query 237 TACAAGTACATGGTCTCTGGTGTTCCTGTCCCACCTGAGCTCATCTTCTCCATTAGAAGA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TACAAGTACATGGTCTCTGGTGTTCCTGTCCCACCTGAGCTCATCTTCTCCATTAGAAGA 299
Query 297 AGCTTGGACACTTCCTTGGTCTCTAGACTCCTTCCTCACCAATCCCTTGGATGGGGGTGT 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 AGCTTGGACACTTCCTTGGTCTCTAGACTCCTTCCTCACCAATCCCTTGGATGGGGATGT 359
Query 357 TACCAGATGGGATTTGGGAGAAAACCAGATCCAGAGCCAGGAAGATGCAGAAGAACAGAT 416
||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 360 TACCAGATGGGGTTTGGAAGAAAACCAGATCCAGAACCAGGAAGATGCAGAAGAACAGAT 419
Query 417 GGTAAGAAATGGAGATGCTCAAGAGAAGCTTACCCAGATTCGAAGTACTGTGAAAAACAC 476
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 420 GGTAAGAAATGGAGATGCTCAAGAGAAGCTTACCCAGATTCAAAGTACTGTGAAAAACAC 479
Query 477 ATGCACAGAGGAAGAAACCGTGCCAGAAAATCTCTTGATCAGAATCAGACAACAACAACT 536
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 480 ATGCACAGAGGAAGAAACCGTGCCAGAAAATCTCTTGATCAGAATCAGACAAGAACAACT 539
Query 537 CCTTTAACATCACCATCTCTCTCATTCACCAACAACAACAACCCAAGTCCCACCTTGtct 596
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 CCTCTAACATCACCATCTCTCTCATTCCCCAACAACAACAACCCAAGTCCCACCTTGTCT 599
Query 597 tcttcttcttcctctaattcctcttctactacttattctgcttcttcttcttcAATGGAT 656
|||||||| | || | ||||| |||||||||||||||||||||||||| ||||||
Sbjct 600 TCTTCTTC-T--TC--A----TCTTCAACTACTTATTCTGCTTCTTCTTCTTCGATGGAT 650
Query 657 GCCTACAGTAACAGTAATAGGTTTGG-GCTTGGTGGAAGTAGTAGTAACACTAGAGGTTA 715
|||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 651 GCCTACAGTAACAGTAATAGGTTTGGTG-TTGGTGGAAGTAGTAGTCACACTAGAGGTTA 709
Query 716 -TTTCAACAGCCATTCTCTTGATTATCCTTATCCTTCTACTTCACCCAAACAACAACAAC 774
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 710 CTTT-AACAGCCATTCTCTTGATTATCCTTATCCTTCTACTTCACCTAAACAACAACAAC 768
Query 775 AAACTCTTCATCATGCTTCCGCTTTGTCACTTCATCAAAATACTAATTCTACTTCTCAGT 834
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 769 AACCTCTTCATCATGCTTCCGCTTTGTCACTTCATCAAAACACTAATTCTACTTCTCAGT 828
Query 835 TCAATGTCTTAGCCTCTGCTACTGACCACAAAGACTTCAGGTACTTTCAAGGGATTGGGG 894
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 829 TCAATGTCTTAGCCTCTCCTACTGACCACAAAGACTTCAGGTACTTTCAAGGAATTGGGG 888
Query 895 AGAGAGTTGGAGGAGTTGGGGAGAGAACGTTCTTTCCAGAAGCATCTAGAAGCTTTCAAG 954
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 889 AGAGAGTT---GGAGTTGGGGAGAGAACGTTTTTTCCAGAAGCATCTAGAAGCTTTCAAG 945
Query 955 ATTCTCCATACCATCATCACCAACAACCGTTAGCAACAGTGATGAATGATCCGTACCACC 1014
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 946 ATTCTCCATACCATCATCACCAACAACCGTTAACAACAGTGATGAATGATCCGTACCACC 1005
Query 1015 ACTGTAGTACTGATCATAATAAGATTGatcatcatca-ca--catactcatcctcatcat 1071
||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||
Sbjct 1006 ACTGTAGTACTGATCATAA---GATTGATCATCATCATCAGACATACTCATCCTCATCAT 1062
Query 1072 catctcaaca---tcttcatcatgatca------tgatcat--A--G-A-CAGCAACAGT 1116
|||||||||| ||||||||||||||| ||||||| | | | ||||||||||
Sbjct 1063 CATCTCAACAACATCTTCATCATGATCAAGAGCATGATCATCGACAGCAACAGCAACAGT 1122
Query 1117 GTTTTGTTTTGGGCGCCGACATGTTCAACAAACCTACAAGAAGTGTCCTTGCAAACTCAT 1176
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1123 GTTTCGTTTTGGGCGCCGACATGTTCAACAAACCCACAAGAAGTGTCCTTGCAAACTCAT 1182
Query 1177 CAAGACAAGATCAAAATCAAGAAGAAGATGAGAAAGATTCATCAGAGTCGTCCAAGAAGT 1236
|||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 1183 CAAGACAAGATCAAAATCAAGAAGAAGAGGAGAAAGATTCATCGGAGTCGTCGAAGAAGT 1242
Query 1237 CTCTACATCACTTCTTTGGTGAGGACTGGGCACAGAACAAGAACAGTTCAGATTCTTGGC 1296
|||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 CTCTTCACCATTTCTTCGGTGAGGACTGGGCACAGAACAAGAACAGTTCAGATTCTTGGC 1302
Query 1297 TTGACCTTTCTTCCCACTCAAGACTCGACACTGGTAGCTAATTAAGTAGAGCTGGCATCA 1356
||||||||||||||||| |||||||||||||||||| ||||||| ||||||| ||||||
Sbjct 1303 TTGACCTTTCTTCCCACCCAAGACTCGACACTGGTAATTAATTAAATAGAGCTAGCATCA 1362
Query 1357 ATGATGGATCTGCACCAACACACACAACTGTGAAATGTTGAAGAAGAGTCACATTTCACA 1416
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1363 ATGATGGATCTGCACCAACACACACAACTGTGAAATGTTGAAGAAGAGTCAAATTTCACA 1422
Query 1417 TCTATTTCCGTGGAACAATGAGACAAGACACTGTTTGCAGAATCCT--A-TA--TGTAT- 1470
||||||||||||||| ||||||||||||||||||||||||||||| | || | |||
Sbjct 1423 TCTATTTCCGTGGAAGGATGAGACAAGACACTGTTTGCAGAATCCTGTAATACATTTATG 1482
Query 1471 T-TTTTCTATCTTTTTCTATGTGTGTTAGGTCCAACAAGAAAAAGTGATCCGACAGATAT 1529
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 TATTTTCTATCGTTTTCTATGTGTGTTAGGTCCAACAAGAAAAAGTGATCCGACAGATAT 1542
Query 1530 AT--CTGTATGTGTTCTCTTGCTTTCTCAAGAAATCAGATTTTATTTT 1575
|| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1543 ATATCTGTATGTGTTCTCTTGCTTTCTCAAGAAATCAGTTTTTATTTT 1590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59039879750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5