BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G13965.1

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg318183 jgi|Araly1|318183|fgenesh1_pm.C_scaffold_3001199           449    9e-126


> Ahg318183 jgi|Araly1|318183|fgenesh1_pm.C_scaffold_3001199
Length=543

 Score =  449 bits (243),  Expect = 9e-126
 Identities = 385/445 (87%), Gaps = 44/445 (10%)
 Strand=Plus/Plus

Query  199  CAACCTCCTCCTCTGACTCCGCCTC-AGTTCAACACGCCTCCTCCTCCGTCAAAATCCAC  257
            ||||||||||||||||||||||||| || ||||||||||||||||||||||  ||  |||
Sbjct  130  CAACCTCCTCCTCTGACTCCGCCTCTAG-TCAACACGCCTCCTCCTCCGTCGCAAGACAC  188

Query  258  TATTAACGTTATGA---Gtcct-c--cgcca---ccaccattaccatcacctccgccgcc  308
             |||||||||||||    |||| |  | |||   |||||||||||||| |||||||| ||
Sbjct  189  CATTAACGTTATGACTCCTCCTACTTCTCCACCGCCACCATTACCATCTCCTCCGCCTCC  248

Query  309  tcctcctccacctactccttctccacctccgccaccgatttcaaaac-ccc-c-tcctcc  365
            |||||||||||| |        ||||| ||||| ||||||||||||| ||| | ||||||
Sbjct  249  TCCTCCTCCACC-A--------CCACCACCGCCGCCGATTTCAAAACACCCTCATCCTCC  299

Query  366  tccGCGTGCTCAAGCTTCTCCTCCGCATTCTAATAACAGAGAATCCCATAGAAACCAACC  425
            ||||||||| ||||| ||||||||||||||   |        |    |||||||||||||
Sbjct  300  TCCGCGTGCGCAAGCGTCTCCTCCGCATTC---T--------A----ATAGAAACCAACC  344

Query  426  ACCACCACGGCGGTTACGTCCCCCATctcctccacctcctcctcctcctTCTCGGGTCTT  485
            ||||  | | |||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct  345  ACCA--A-GACGGTTACGTCCCCCATCTCCT---CCTCCTCCTCCTCCTTCTCGGGTCTT  398

Query  486  CAAACAGTCAGAGAAAAGTGGATTAAACACAGGGAAAACAGTGGGTCTTGTATTCGCTGG  545
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  399  CAAACAGTCAGAGAAAAGTGGATTAAACACAGGGAAAACAGTGGGTCTTGTATTCGCTGG  458

Query  546  GTTTGCAGCAATGTTGCAGATATGCGTTGTTGCCTTCTTGGTTTTCAAAAGAAAGCAGCT  605
            |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  459  GTTTGCAGCAATCTTGCAGATTTGCGTTGTTGCCTTCTTGGTTTTCAAAAGAAAGCAGCT  518

Query  606  TCTAAGGATGACACATACTTATTGA  630
            |||||||||||||||||||||||||
Sbjct  519  TCTAAGGATGACACATACTTATTGA  543


 Score =  145 bits (78),  Expect = 5e-34
 Identities = 110/124 (89%), Gaps = 8/124 (6%)
 Strand=Plus/Plus

Query  1    ATGGGTTTTGTTTTATTATTTCTCGGCATGATTCTCACCTTTCATGGCTTCCTTCTTGTC  60
            ||||||||||  || |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  1    ATGGGTTTTG--TT-TTATTTCTCGGCATGATTCTCAGCTTTCATGGCTTCCTTCTTGTC  57

Query  61   CAATCACAACAACAAGTTCTACCCCAACCTCAATTACAATCACCACCTCCTCCGC-CGTC  119
            |||||||||||| |  | | ||  ||||| ||||||||||||||||||||||||| | ||
Sbjct  58   CAATCACAACAAGA--T-CAACGGCAACCCCAATTACAATCACCACCTCCTCCGCTC-TC  113

Query  120  TCCG  123
            ||||
Sbjct  114  TCCG  117



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23064364785


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5