BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13965.1 Length=630 Score E Sequences producing significant alignments: (Bits) Value Ahg318183 jgi|Araly1|318183|fgenesh1_pm.C_scaffold_3001199 449 9e-126 > Ahg318183 jgi|Araly1|318183|fgenesh1_pm.C_scaffold_3001199 Length=543 Score = 449 bits (243), Expect = 9e-126 Identities = 385/445 (87%), Gaps = 44/445 (10%) Strand=Plus/Plus Query 199 CAACCTCCTCCTCTGACTCCGCCTC-AGTTCAACACGCCTCCTCCTCCGTCAAAATCCAC 257 ||||||||||||||||||||||||| || |||||||||||||||||||||| || ||| Sbjct 130 CAACCTCCTCCTCTGACTCCGCCTCTAG-TCAACACGCCTCCTCCTCCGTCGCAAGACAC 188 Query 258 TATTAACGTTATGA---Gtcct-c--cgcca---ccaccattaccatcacctccgccgcc 308 ||||||||||||| |||| | | ||| |||||||||||||| |||||||| || Sbjct 189 CATTAACGTTATGACTCCTCCTACTTCTCCACCGCCACCATTACCATCTCCTCCGCCTCC 248 Query 309 tcctcctccacctactccttctccacctccgccaccgatttcaaaac-ccc-c-tcctcc 365 |||||||||||| | ||||| ||||| ||||||||||||| ||| | |||||| Sbjct 249 TCCTCCTCCACC-A--------CCACCACCGCCGCCGATTTCAAAACACCCTCATCCTCC 299 Query 366 tccGCGTGCTCAAGCTTCTCCTCCGCATTCTAATAACAGAGAATCCCATAGAAACCAACC 425 ||||||||| ||||| |||||||||||||| | | ||||||||||||| Sbjct 300 TCCGCGTGCGCAAGCGTCTCCTCCGCATTC---T--------A----ATAGAAACCAACC 344 Query 426 ACCACCACGGCGGTTACGTCCCCCATctcctccacctcctcctcctcctTCTCGGGTCTT 485 |||| | | ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 345 ACCA--A-GACGGTTACGTCCCCCATCTCCT---CCTCCTCCTCCTCCTTCTCGGGTCTT 398 Query 486 CAAACAGTCAGAGAAAAGTGGATTAAACACAGGGAAAACAGTGGGTCTTGTATTCGCTGG 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 399 CAAACAGTCAGAGAAAAGTGGATTAAACACAGGGAAAACAGTGGGTCTTGTATTCGCTGG 458 Query 546 GTTTGCAGCAATGTTGCAGATATGCGTTGTTGCCTTCTTGGTTTTCAAAAGAAAGCAGCT 605 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 459 GTTTGCAGCAATCTTGCAGATTTGCGTTGTTGCCTTCTTGGTTTTCAAAAGAAAGCAGCT 518 Query 606 TCTAAGGATGACACATACTTATTGA 630 ||||||||||||||||||||||||| Sbjct 519 TCTAAGGATGACACATACTTATTGA 543 Score = 145 bits (78), Expect = 5e-34 Identities = 110/124 (89%), Gaps = 8/124 (6%) Strand=Plus/Plus Query 1 ATGGGTTTTGTTTTATTATTTCTCGGCATGATTCTCACCTTTCATGGCTTCCTTCTTGTC 60 |||||||||| || |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1 ATGGGTTTTG--TT-TTATTTCTCGGCATGATTCTCAGCTTTCATGGCTTCCTTCTTGTC 57 Query 61 CAATCACAACAACAAGTTCTACCCCAACCTCAATTACAATCACCACCTCCTCCGC-CGTC 119 |||||||||||| | | | || ||||| ||||||||||||||||||||||||| | || Sbjct 58 CAATCACAACAAGA--T-CAACGGCAACCCCAATTACAATCACCACCTCCTCCGCTC-TC 113 Query 120 TCCG 123 |||| Sbjct 114 TCCG 117 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23064364785 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5