BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G13970.1

Length=529
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg318184 jgi|Araly1|318184|fgenesh1_pm.C_scaffold_3001200           416    7e-116
  Ahg948906 jgi|Araly1|948906|scaffold_800793.1                       76.8    1e-13 


> Ahg318184 jgi|Araly1|318184|fgenesh1_pm.C_scaffold_3001200
Length=285

 Score =  416 bits (225),  Expect = 7e-116
 Identities = 266/286 (93%), Gaps = 2/286 (1%)
 Strand=Plus/Plus

Query  55   ATGGCGACCGAATCTCCGAATTCTGTTCAGAAAATTGTTGTTCATCTGCGAGCTACTGGT  114
            |||||||| || |||||||||||||||| ||||||||||||||||||  |||||||||||
Sbjct  1    ATGGCGACGGAGTCTCCGAATTCTGTTCGGAAAATTGTTGTTCATCTAAGAGCTACTGGT  60

Query  115  GGTGCTCCGATAC-TGAAACAATCTAAATTCAAGGTTTCAGGGAGTGACAAGTTTGCTAA  173
            |||||| | || | |||||||||||||||||||| || |||||| ||| || ||||||||
Sbjct  61   GGTGCTTCAAT-CTTGAAACAATCTAAATTCAAGATTGCAGGGACTGAAAAATTTGCTAA  119

Query  174  CGTGATTGATTTTCTAAGACGGCAGCTTCACTCTGACTCATTGTTTGTTTATGTGAACAG  233
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  120  AGTGATTGATTTTCTAAGACGGCAGCTTCACTCTGACTCATTGTTTGTTTATGTAAACAG  179

Query  234  CGCTTTCTCGCCAAACCCGGATGAATCAGTAATTGATCTATACAATAACTTTGGGTTTGA  293
            |||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct  180  CGCTTTCTCGCCTAACCCCGATGAGTCAGTAATTGATCTATACAATAACTTTGGGTTTGA  239

Query  294  TGGTAAACTGGTGGTGAACTATGCTTGTTCCATGGCATGGGGTTAA  339
            ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  240  TGGTAAACTGGTGGTTAACTATGCTTGTTCCATGGCATGGGGTTAA  285


> Ahg948906 jgi|Araly1|948906|scaffold_800793.1
Length=560

 Score = 76.8 bits (41),  Expect = 1e-13
 Identities = 51/55 (93%), Gaps = 3/55 (5%)
 Strand=Plus/Plus

Query  280  AACTTTGGGTTTGATGGTAAACTGGTGG-TGA--ACTATGCTTGTTCCATGGCAT  331
            |||||||||||||||||||||||||||| | |  |||||||||||||||||||||
Sbjct  483  AACTTTGGGTTTGATGGTAAACTGGTGGTTAATTACTATGCTTGTTCCATGGCAT  537



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19268572445


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5