BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13970.1 Length=529 Score E Sequences producing significant alignments: (Bits) Value Ahg318184 jgi|Araly1|318184|fgenesh1_pm.C_scaffold_3001200 416 7e-116 Ahg948906 jgi|Araly1|948906|scaffold_800793.1 76.8 1e-13 > Ahg318184 jgi|Araly1|318184|fgenesh1_pm.C_scaffold_3001200 Length=285 Score = 416 bits (225), Expect = 7e-116 Identities = 266/286 (93%), Gaps = 2/286 (1%) Strand=Plus/Plus Query 55 ATGGCGACCGAATCTCCGAATTCTGTTCAGAAAATTGTTGTTCATCTGCGAGCTACTGGT 114 |||||||| || |||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 1 ATGGCGACGGAGTCTCCGAATTCTGTTCGGAAAATTGTTGTTCATCTAAGAGCTACTGGT 60 Query 115 GGTGCTCCGATAC-TGAAACAATCTAAATTCAAGGTTTCAGGGAGTGACAAGTTTGCTAA 173 |||||| | || | |||||||||||||||||||| || |||||| ||| || |||||||| Sbjct 61 GGTGCTTCAAT-CTTGAAACAATCTAAATTCAAGATTGCAGGGACTGAAAAATTTGCTAA 119 Query 174 CGTGATTGATTTTCTAAGACGGCAGCTTCACTCTGACTCATTGTTTGTTTATGTGAACAG 233 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 120 AGTGATTGATTTTCTAAGACGGCAGCTTCACTCTGACTCATTGTTTGTTTATGTAAACAG 179 Query 234 CGCTTTCTCGCCAAACCCGGATGAATCAGTAATTGATCTATACAATAACTTTGGGTTTGA 293 |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 180 CGCTTTCTCGCCTAACCCCGATGAGTCAGTAATTGATCTATACAATAACTTTGGGTTTGA 239 Query 294 TGGTAAACTGGTGGTGAACTATGCTTGTTCCATGGCATGGGGTTAA 339 ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 240 TGGTAAACTGGTGGTTAACTATGCTTGTTCCATGGCATGGGGTTAA 285 > Ahg948906 jgi|Araly1|948906|scaffold_800793.1 Length=560 Score = 76.8 bits (41), Expect = 1e-13 Identities = 51/55 (93%), Gaps = 3/55 (5%) Strand=Plus/Plus Query 280 AACTTTGGGTTTGATGGTAAACTGGTGG-TGA--ACTATGCTTGTTCCATGGCAT 331 |||||||||||||||||||||||||||| | | ||||||||||||||||||||| Sbjct 483 AACTTTGGGTTTGATGGTAAACTGGTGGTTAATTACTATGCTTGTTCCATGGCAT 537 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19268572445 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5