BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13980.1
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929169 jgi|Araly1|929169|scaffold_301626.1 1487 0.0
Ahg474551 jgi|Araly1|474551|fgenesh2_kg.1__4505__AT1G54200.1 108 1e-22
> Ahg929169 jgi|Araly1|929169|scaffold_301626.1
Length=1118
Score = 1487 bits (805), Expect = 0.0
Identities = 1011/1104 (92%), Gaps = 39/1104 (4%)
Strand=Plus/Plus
Query 1 ATGGAGATCACTTGGGAGAAACCTAAATCTTCATCTCACCACCGTAACCCTTCTTTCTCC 60
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 21 ATGGAGATCACTTGGGAGAAACCTATTTCTTCATCTCACCACCGTCACCCTTCTTTCTCC 80
Query 61 TCCACTCTCCTCGACCAAATCTACCGCTCCATCGACGATTCCTcccccccTCCTCCCCTC 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 81 TCCACTCTCCTCGACCAAATCTACCGCTCCATCGACGATTCCT---CCCCTCCTCCCCTC 137
Query 121 GAATCCATCAAGAAGAAGAAGCATCACCACCAACAACGTAACGCTTCTCTACACGAAGAT 180
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 138 GAATCCATCAAGAAGAAGAAGCATCACCACCAGCAACGTAACGCTTCTCTCCACGAGGAT 197
Query 181 CGTGAAATCTCTCCTA-TCTATCACCGCCGCTCAATCGCCGCTGATTTCGAGAGATCTAG 239
|||||| ||||||| | ||||||||||||||||||| |||||||||| ||||||||| ||
Sbjct 198 CGTGAAGTCTCTCC-AGTCTATCACCGCCGCTCAATTGCCGCTGATTACGAGAGATCCAG 256
Query 240 GAGGAAGACAGACTTTCTCAGACATTCCAACTCTAGCTCTTCTGATTCAA------GCGG 293
||||||||| |||||||||||||| |||||||||| |||||||||||||| ||||
Sbjct 257 GAGGAAGACTGACTTTCTCAGACACTCCAACTCTAACTCTTCTGATTCAAGCGGCGGCGG 316
Query 294 ATTCTCCTCTTCCGAGTCAGATTCATTCCACGGACGCTCCAAATCTTCCGCTTCTCCTCC 353
|||||||||||||||||| ||||| ||| ||||||| |||||||| | | || || ||||
Sbjct 317 ATTCTCCTCTTCCGAGTCTGATTCCTTCTACGGACGTTCCAAATCCT-C-CTCCT-CTCC 373
Query 354 TTCTTCTTCTCGTCAACAACCGAAACCGATTCGAACATCATCCGTCGACCACTCCTCCGC 413
|| || || | |||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 374 -TC--CTCCTGGAAAACAACCGAAGCCGATTCGAACATCACCCGTCGACCACTCCTCCGC 430
Query 414 CGTCCAGAAACCTAAAGAACTCGGTGGCTTCTTGAGAACGAAATCAAAAGCGTTAAAGAT 473
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 431 CGTCCAGAAACCTAAAGAACTCGGTGGCTTCTTGAGAACGAAATCAAAAGCTTTAAAGAT 490
Query 474 CTACTCCGACTTGAAAAAAGTCAAACAACCTATCTCTCCGGGCGGCAGACTCGCTACTTT 533
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 491 CTACTCCGACTTGAAAAAAGTCAAACAACCAATCTCTCCCGGCGGCAGACTCGCTACTTT 550
Query 534 CCTTAACTCTCTTTTCACCAACGCCGCC---ACTAACCCTAAGAAGCACAAGAAAACTAC 590
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 551 CCTTAACTCTCTTTTCACCAACGCCGCCGCCACTAACCCTAAGAAGCACAAGAAAACTAC 610
Query 591 CACCGTCGCCGTCGTGGAAGAACCACACTCCTCCTCCACATGCTCCTCCGCGTCGTCCTT 650
||| | | || || |||||||||||||||||||||||||||||||||| || ||||
Sbjct 611 AACCA-C-C-GT--TG-AAGAACCACACTCCTCCTCCACATGCTCCTCCGCATCCTCCTA 664
Query 651 CTCTAGGTCTTGCTTGAGCAAAACTCCATCGTCTAGCGGCAAATCAAAAAGATCCGTACG 710
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 CTCCAGGTCTTGCTTGAGCAAAACTCCATCGTCTAGCGGCAAATCAAAAAGATCCGTACG 724
Query 711 GTTCTGTCCAGTCAATGTGATCCTTGACGAAGATTCCTCCTTT-ACCATGCCTTACGCTT 769
|||||| || |||||||| ||||| ||||||||||||||| || || |||||||||||||
Sbjct 725 GTTCTGCCCTGTCAATGTTATCCTCGACGAAGATTCCTCCATTCAC-ATGCCTTACGCTT 783
Query 770 ATAACAACGAA-AGACTCTACGATAACAACGAAGCTAAACGCGT-G-----GAAGAGCAT 822
|||||||| || || ||||||| || ||||||||||||||||| | |||||||||
Sbjct 784 ATAACAAC-AACAGTCTCTACGGTAGCAACGAAGCTAAACGCGACGTTATAGAAGAGCAT 842
Query 823 CGCCGTGTCATCCAAGCAGCCAAAGATCTTCTTAGAACTTACCATAACAAGAACAAAGTT 882
|||||||| ||| |||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 843 CGCCGTGTTATCGAAGCAGCCAAAGATCTTCTTAGAACTTACCATAATAAGAACAATGTT 902
Query 883 ACAACTACGA--A-CATCAATAACGTAGAAGAAGATGATGAAGACGATGCTGCGAGTTGT 939
||||| |||| | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 903 ACAACGACGACGAACATCACCAACGTAGAAGAAGATGATGAAGACGATGCTGCGAGTTGT 962
Query 940 GCAAGCTCTGATCTATTCGAGTTGGAGAATCTGTCGGCTATTGGGATCGAGAGGTATAGA 999
|||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 963 GCAAGCTCTGATCTATTCGAGTTGGAGAATCTTTCGGCGATTGGGATCGATAGGTATAGA 1022
Query 1000 GAAGAGCTTCCGGTTTACGAAACCACTCGTCTTGATAATATGAATCGAGTCATTGCTACT 1059
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1023 GAAGAGCTTCCGGTTTACGAAACCACTCGTCTGGATAATATGAATCGAGTCATTGCTACT 1082
Query 1060 GGTTTAATTGTATAATTATTATTA 1083
||||||||||||||||||||||||
Sbjct 1083 GGTTTAATTGTATAATTATTATTA 1106
> Ahg474551 jgi|Araly1|474551|fgenesh2_kg.1__4505__AT1G54200.1
Length=1261
Score = 108 bits (58), Expect = 1e-22
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand=Plus/Plus
Query 38 ACCACCGTAACCCTTCTTTCTCCTCCACTCTCCTCGACCAAATCTACCGCTCCATCGACG 97
|||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 178 ACCACCGTCATCCTTCTTTCTCCTCCTCTCTCCTCGACCAAATCTACCGCTCCATCGACG 237
Query 98 ATTCCTcccccc-cTCCTCC 116
||||||| || |||||||
Sbjct 238 ATTCCTCTACCAACTCCTCC 257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45747500400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5