BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G13980.1 Length=1225 Score E Sequences producing significant alignments: (Bits) Value Ahg929169 jgi|Araly1|929169|scaffold_301626.1 1487 0.0 Ahg474551 jgi|Araly1|474551|fgenesh2_kg.1__4505__AT1G54200.1 108 1e-22 > Ahg929169 jgi|Araly1|929169|scaffold_301626.1 Length=1118 Score = 1487 bits (805), Expect = 0.0 Identities = 1011/1104 (92%), Gaps = 39/1104 (4%) Strand=Plus/Plus Query 1 ATGGAGATCACTTGGGAGAAACCTAAATCTTCATCTCACCACCGTAACCCTTCTTTCTCC 60 ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 21 ATGGAGATCACTTGGGAGAAACCTATTTCTTCATCTCACCACCGTCACCCTTCTTTCTCC 80 Query 61 TCCACTCTCCTCGACCAAATCTACCGCTCCATCGACGATTCCTcccccccTCCTCCCCTC 120 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 81 TCCACTCTCCTCGACCAAATCTACCGCTCCATCGACGATTCCT---CCCCTCCTCCCCTC 137 Query 121 GAATCCATCAAGAAGAAGAAGCATCACCACCAACAACGTAACGCTTCTCTACACGAAGAT 180 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| Sbjct 138 GAATCCATCAAGAAGAAGAAGCATCACCACCAGCAACGTAACGCTTCTCTCCACGAGGAT 197 Query 181 CGTGAAATCTCTCCTA-TCTATCACCGCCGCTCAATCGCCGCTGATTTCGAGAGATCTAG 239 |||||| ||||||| | ||||||||||||||||||| |||||||||| ||||||||| || Sbjct 198 CGTGAAGTCTCTCC-AGTCTATCACCGCCGCTCAATTGCCGCTGATTACGAGAGATCCAG 256 Query 240 GAGGAAGACAGACTTTCTCAGACATTCCAACTCTAGCTCTTCTGATTCAA------GCGG 293 ||||||||| |||||||||||||| |||||||||| |||||||||||||| |||| Sbjct 257 GAGGAAGACTGACTTTCTCAGACACTCCAACTCTAACTCTTCTGATTCAAGCGGCGGCGG 316 Query 294 ATTCTCCTCTTCCGAGTCAGATTCATTCCACGGACGCTCCAAATCTTCCGCTTCTCCTCC 353 |||||||||||||||||| ||||| ||| ||||||| |||||||| | | || || |||| Sbjct 317 ATTCTCCTCTTCCGAGTCTGATTCCTTCTACGGACGTTCCAAATCCT-C-CTCCT-CTCC 373 Query 354 TTCTTCTTCTCGTCAACAACCGAAACCGATTCGAACATCATCCGTCGACCACTCCTCCGC 413 || || || | |||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 374 -TC--CTCCTGGAAAACAACCGAAGCCGATTCGAACATCACCCGTCGACCACTCCTCCGC 430 Query 414 CGTCCAGAAACCTAAAGAACTCGGTGGCTTCTTGAGAACGAAATCAAAAGCGTTAAAGAT 473 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 431 CGTCCAGAAACCTAAAGAACTCGGTGGCTTCTTGAGAACGAAATCAAAAGCTTTAAAGAT 490 Query 474 CTACTCCGACTTGAAAAAAGTCAAACAACCTATCTCTCCGGGCGGCAGACTCGCTACTTT 533 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 491 CTACTCCGACTTGAAAAAAGTCAAACAACCAATCTCTCCCGGCGGCAGACTCGCTACTTT 550 Query 534 CCTTAACTCTCTTTTCACCAACGCCGCC---ACTAACCCTAAGAAGCACAAGAAAACTAC 590 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 551 CCTTAACTCTCTTTTCACCAACGCCGCCGCCACTAACCCTAAGAAGCACAAGAAAACTAC 610 Query 591 CACCGTCGCCGTCGTGGAAGAACCACACTCCTCCTCCACATGCTCCTCCGCGTCGTCCTT 650 ||| | | || || |||||||||||||||||||||||||||||||||| || |||| Sbjct 611 AACCA-C-C-GT--TG-AAGAACCACACTCCTCCTCCACATGCTCCTCCGCATCCTCCTA 664 Query 651 CTCTAGGTCTTGCTTGAGCAAAACTCCATCGTCTAGCGGCAAATCAAAAAGATCCGTACG 710 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 665 CTCCAGGTCTTGCTTGAGCAAAACTCCATCGTCTAGCGGCAAATCAAAAAGATCCGTACG 724 Query 711 GTTCTGTCCAGTCAATGTGATCCTTGACGAAGATTCCTCCTTT-ACCATGCCTTACGCTT 769 |||||| || |||||||| ||||| ||||||||||||||| || || ||||||||||||| Sbjct 725 GTTCTGCCCTGTCAATGTTATCCTCGACGAAGATTCCTCCATTCAC-ATGCCTTACGCTT 783 Query 770 ATAACAACGAA-AGACTCTACGATAACAACGAAGCTAAACGCGT-G-----GAAGAGCAT 822 |||||||| || || ||||||| || ||||||||||||||||| | ||||||||| Sbjct 784 ATAACAAC-AACAGTCTCTACGGTAGCAACGAAGCTAAACGCGACGTTATAGAAGAGCAT 842 Query 823 CGCCGTGTCATCCAAGCAGCCAAAGATCTTCTTAGAACTTACCATAACAAGAACAAAGTT 882 |||||||| ||| |||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 843 CGCCGTGTTATCGAAGCAGCCAAAGATCTTCTTAGAACTTACCATAATAAGAACAATGTT 902 Query 883 ACAACTACGA--A-CATCAATAACGTAGAAGAAGATGATGAAGACGATGCTGCGAGTTGT 939 ||||| |||| | ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 903 ACAACGACGACGAACATCACCAACGTAGAAGAAGATGATGAAGACGATGCTGCGAGTTGT 962 Query 940 GCAAGCTCTGATCTATTCGAGTTGGAGAATCTGTCGGCTATTGGGATCGAGAGGTATAGA 999 |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| Sbjct 963 GCAAGCTCTGATCTATTCGAGTTGGAGAATCTTTCGGCGATTGGGATCGATAGGTATAGA 1022 Query 1000 GAAGAGCTTCCGGTTTACGAAACCACTCGTCTTGATAATATGAATCGAGTCATTGCTACT 1059 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1023 GAAGAGCTTCCGGTTTACGAAACCACTCGTCTGGATAATATGAATCGAGTCATTGCTACT 1082 Query 1060 GGTTTAATTGTATAATTATTATTA 1083 |||||||||||||||||||||||| Sbjct 1083 GGTTTAATTGTATAATTATTATTA 1106 > Ahg474551 jgi|Araly1|474551|fgenesh2_kg.1__4505__AT1G54200.1 Length=1261 Score = 108 bits (58), Expect = 1e-22 Identities = 73/80 (91%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 38 ACCACCGTAACCCTTCTTTCTCCTCCACTCTCCTCGACCAAATCTACCGCTCCATCGACG 97 |||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 178 ACCACCGTCATCCTTCTTTCTCCTCCTCTCTCCTCGACCAAATCTACCGCTCCATCGACG 237 Query 98 ATTCCTcccccc-cTCCTCC 116 ||||||| || ||||||| Sbjct 238 ATTCCTCTACCAACTCCTCC 257 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45747500400 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5