BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G13990.1
Length=2915
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478805 jgi|Araly1|478805|fgenesh2_kg.3__1506__AT3G13990.1 4390 0.0
> Ahg478805 jgi|Araly1|478805|fgenesh2_kg.3__1506__AT3G13990.1
Length=2916
Score = 4390 bits (2377), Expect = 0.0
Identities = 2752/2929 (94%), Gaps = 42/2929 (1%)
Strand=Plus/Plus
Query 15 AAATCCTAACTTCttttttttttttGTTCTCTTAAAGCCGT-TCC-CTCTTCTCTGTACT 72
||||||||||||| |||||||||| ||| |||||||||| || ||||||||||||||
Sbjct 2 AAATCCTAACTTC--TTTTTTTTTTCCTCTTTTAAAGCCGTCCCCTCTCTTCTCTGTACT 59
Query 73 CGAAACCCTAGTAGT-TGCTCTATCCGATTTTAGGGTTTAAGAGTCGAATCATTAGCATC 131
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 60 CGAAACCCTAGTAGTGTGCTCTATCCGATTTTAGGGTTTAAGAGTCAAATCATTAGCATC 119
Query 132 TA-CCTTGATTACGCTGATCTCACTTGGTTTCGCTACTCGATCCTTGAATTTCTTTGTTT 190
|| | ||| ||||| |||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 120 TAGCTTTGCCTACGCGGATCGCACTTGGTTTCGCTACTCGATCCTTGAATTTCTCTG-TT 178
Query 191 TTTGTGTGTTTCGGTTTATTCGATACGTCTTTGATCCGTAATGGTGACTGGGTCCAGAAC 250
||||||||||||| ||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 179 TTTGTGTGTTTCGATTTCTCCGATTCGTCTTTGATCCGTAATGGTGACTGGGTCCAGAAC 238
Query 251 TAGCGGTAATCGTGGGGTAGGACTCGATGATGAAGCGAAAAAGATGATTCAATCGATTAA 310
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 239 TAGCGGTAATCGTGGGGTAGGACTCGATGATGAATCGAAAAAGATGATTCAATCGATTAA 298
Query 311 GGAAGTTGTGGATAGTCACTCCGATGCTGATATTTACACTGCCTTAAAAGAAGCTAACAT 370
|||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GGAAATTGTGGGTAATCACTCCGATGCTGATATTTACACTGCCTTAAAAGAAGCTAACAT 358
Query 371 GGATGCTAACGAGGCTGTGGAGAAGCTGATTCATCAAGATCCATTTCACGAGGTGAAGAG 430
||| ||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 359 GGACGCTGACGAGGCTGTGCAGAAGCTGATTCATCAAGATCCATTCCACGAGGTGAAGAG 418
Query 431 AAAAAGAGACAGGAAAAAAGAGGATACAGTATTTGTTGAGCCTGCCAACATAAAGAAACC 490
||||||||||||||||||||||| ||||||| ||| ||||||||| ||| ||||||||||
Sbjct 419 AAAAAGAGACAGGAAAAAAGAGGGTACAGTAGTTGGTGAGCCTGCAAACGTAAAGAAACC 478
Query 491 TCTTGAAAATGTTACCAGTGAAGTGAAAGTTCGTACACAGCCTGAACATAATGTTCGGAG 550
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 479 TCTTGAAAATGTTACCAGTGAAGTGAAGGTTCGTACACAGCCTGAACATAATGTTCGGAG 538
Query 551 AGGAGGCTACAGTAGGAATTTCTTCCCCAGGAA---CGCTGCTCAACGAAATGCATCTCC 607
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 539 AGGAGGCTACAGTAGGAATTTCTTCCCCAGGAACGCCGCTGCTCAACGAAATGCATCTCC 598
Query 608 TAGAAATCCTGCTACTGGATCCAACAAAGAGTTTCGCGTTGTTAGGGACAACAGGTCTAA 667
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 599 TAGAAATCCTGCTGCTGGATCCAACAGAGAGTTTCGCGTTGTTAGGGACAACAGGTCTAA 658
Query 668 TCCAAATGTTGATGAAGAGTTGAAGCATTCTTCTGCCCAGTCCTCTGGATCAAATATTAA 727
||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 659 TCCAAATGTCAATGAACAGTTGAAGCATTCTTCTGCACAGTCCTCTGGATCAAATATTAA 718
Query 728 CAAAGTGGTTGCCACTGTGAACAAATTGGGCTCAAGAGGTGGTTTGGGCAATCGTAACTC 787
||||||||| |||||||||||||||||||||||||||||||||||||| |||| || |||
Sbjct 719 CAAAGTGGTGGCCACTGTGAACAAATTGGGCTCAAGAGGTGGTTTGGGAAATCATAGCTC 778
Query 788 TTCTGGGGCTCAAGATTCAACTGACGAGTGTAATGCTCCAGCAGATGCCAGGCTCAGACA 847
||| |||||||||||||| |||||| | ||||||||||||||||||| ||||||||||||
Sbjct 779 TTCAGGGGCTCAAGATTCTACTGACAATTGTAATGCTCCAGCAGATGGCAGGCTCAGACA 838
Query 848 GGCTGAAATTCG-TCCTTTGCATTGTCCTGTCAATAAAGAACTCGGTGGAGTTACTTTGC 906
|||||||||| | ||||||||| ||||| ||| || ||||||| |||||||||||||||
Sbjct 839 GGCTGAAATT-GCTCCTTTGCACCGTCCTATCAGTACAGAACTCCGTGGAGTTACTTTGC 897
Query 907 CATCAACCAATTCAGTTCTTGGTGTATATTCGTCTTCCAAAGATCCAGTTCATGTACCTT 966
|||||||||||||||||||||||| || |||||||||| ||||||||||||||||| |
Sbjct 898 CATCAACCAATTCAGTTCTTGGTG--TA-TCGTCTTCCACCGATCCAGTTCATGTACCAT 954
Query 967 CTCCTGTTTCTAGATCATCACCCGTGGGAGCTATTAAACGTGAAGTAAGGGGTGGAGGTT 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 CTCCTGTTTCTAGATCATCACCCGTGGGAGCTATTAAACGTGAAGTAAGGGGTGGAGGTT 1014
Query 1027 TAGGTGGAAAACCTTCTGAAAATGTTGGTAAAGATCCATCTGTGCCCTCTTTTTCAGGGT 1086
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1015 TAGGTGGAAAACCTTCTGAAAATGTTGGTAAAGCTCCATCTGTGCCCTCTTTTTCAGGGT 1074
Query 1087 CCTCTATTAGAAAAAATGGACCTCCAAATGCACATCG------ACCATCTTCCCCAACTT 1140
|||| |||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1075 CCTCAATTAGAAAAAGTGGACCTCCAAATGCACATCGACCATCACCATCTTCCCCAACTT 1134
Query 1141 CAAAGATTGATCACAGTCGAACTACTGCACGTGAGTCTGTTATGCCCAGTGGAGTGGAAA 1200
|||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||
Sbjct 1135 CAAAGATTGATCACAGTCGAACTATTGCACGAGAGTCTGTTATGCCCAGTGGTGTGGAAA 1194
Query 1201 AGAATAGGTCATATTTGAACAGACAGCGTGGGAATAGAGGAAGCCAATATGCTAG-A-AC 1258
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1195 AGAATAGGTCATTTTTGAACAGACAGCGTGGGAATAGAGGAAGCCAATATGCTAGAACAC 1254
Query 1259 -ACAACAAGTTGGTGGCCATACAAAGGGAGCCTCACAGAACAAGGAGTGGAAGCCTAAAT 1317
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1255 AACAACAAGTTGGTGGCCATACAAAGGGAGCCTCACAGCACAAGGAGTGGAAGCCTAAAT 1314
Query 1318 CTAATCAGAAACCTGTTGGACATAACCCTGGAGTAATTGGAACACCTACAAAGTCTCAAG 1377
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CAAATCAGAAACCTGTTGGACATAACCCTGGAGTAATTGGAACACCTACAAAGTCTCAAG 1374
Query 1378 CTCGTCGTCCTGCTGATAATTCCATAAATGTGGAAACAGAAGCCGTCAAGTTGCAGA--A 1435
||||| |||||| |||||||||||||||||||||| || ||||||| ||| ||| | |
Sbjct 1375 CTCGTAGTCCTGTTGATAATTCCATAAATGTGGAATCAAAAGCCGTTAAG--GCACACGA 1432
Query 1436 TAAGCTTTC-ACATGTTCATATAAGTGAAAGTCAGAATGTCATCATCGCAGATCATATTC 1494
||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 TAAGCTTCCGA-ATGTTCATATAAGTGAAAGTCAGAATGTCATCATCGCAGATCATATTC 1491
Query 1495 GTGTCCCGGAGACTGACCGCTGTCAGCTAACTTTTGGTAGCTTTGTTCAAGAGTTTAATT 1554
|||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1492 GTGTCCCGGAAACTGACCGCTGTCAGCTTACTTTTGGTAGCTTTGTTCAAGAGGTTAATT 1551
Query 1555 CCTCAAGGAATTCAGA-ATCTGCTTTCGAAGAATCACACTCTTCAGAAGAAGTTAGAGAA 1613
| |||||||||||| | |||||||||| |||||||| |||||||||||| ||||||||
Sbjct 1552 CTTCAAGGAATTCA-ACATCTGCTTTCCAAGAATCATGGTCTTCAGAAGAACTTAGAGAA 1610
Query 1614 TCTGATCGTAGTTCGCCAGTTACTTGTCCTGAGGCTTCAGCAGATGGTCCGGGCGTTCTG 1673
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
Sbjct 1611 TCTGATCGTAGTTCGCCAGTTACTTGTCCTGAGGCTTCAACAGATGGTCCAGGCGTTCAG 1670
Query 1674 CCTATC---ACTATTGATGATCATGTCAGAGTTTCTAGATCTGACTCACCCGTCTCGGCA 1730
|||||| | |||||||||||| |||||| ||||| ||| |||||||||||||||||||
Sbjct 1671 CCTATCAATATTATTGATGATCACGTCAGAATTTCTGGATATGACTCACCCGTCTCGGCA 1730
Query 1731 GTATCTGAGCCACAGTTACCCGAACAGAAAGAAACTCATAGATCTGACAATTTGGATGCG 1790
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1731 GTATCTGAGCCACAGTTGCCCGAACAGAAAGAAACTCATAGATCTGACAATTTGGATGAG 1790
Query 1791 TACTCGGGGATTGAATTACTCAATAGGAATGGTCCACCTTATACTCCTTTGGAGTTTGAA 1850
|||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1791 TACTCGGGAATTCAATTACTCAATAGGAATGGTCCACCTTATACTCCTTTAGAGTTTGAA 1850
Query 1851 CAGCAGCAAGATCCTCCGGAGTTGCAAAAATTTTCTCAGGCTTATGACAATCATGGTAGT 1910
||||||||||||| ||| |||||||||||| ||||||||||||||| ||| |||||||||
Sbjct 1851 CAGCAGCAAGATCTTCCCGAGTTGCAAAAAATTTCTCAGGCTTATGCCAACCATGGTAGT 1910
Query 1911 TATGAATTTCCGTACTTTAGT-CCTGCAATGGATGAAACTGTACGAGTTCAAGGATTACC 1969
|||||||||||||| |||| | ||||||||||||||||| ||||||||||||||||||||
Sbjct 1911 TATGAATTTCCGTATTTTA-TACCTGCAATGGATGAAACCGTACGAGTTCAAGGATTACC 1969
Query 1970 ATCTCCACACGAGCAGGGATTAAGTGCTCACATGTTAAATAATGCCCCACCATCCACTAT 2029
||||||||| ||||||||||| ||| |||||||| |||||||| |||| ||||||||| |
Sbjct 1970 ATCTCCACAGGAGCAGGGATTCAGTACTCACATGGTAAATAATACCCCTCCATCCACTCT 2029
Query 2030 TCCCATGTTACAGCAACAACAGCAGGCATCAATGCAACAGATGTATCCGCAGGTCCATGT 2089
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2030 TCCCATGTTGCAGCAACAACAACAGGCATCAATGCAACAGATGTATCCGCAGGTCCATGT 2089
Query 2090 TTCGCATTTTCCCAATCTCATGCCTTATCGTCAATTCCTTTCCCCAGTCTATGTTCCCCA 2149
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2090 TTCGCATTTTCCCAATCTCATGCCTTATCGTCAATTCCTCTCCCCAGTCTATGTTCCCCA 2149
Query 2150 AATGCCCATGCCAGGCTACTCAGGTAACCCAGCAGCATATGCACACCCTTCAAATGGCAA 2209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2150 AATGCCCATGCCAGGCTACTCAGGTAACCCAGCAGCATATGCACACCCTTCAAATGGCAA 2209
Query 2210 TAGCTATGTGCTGATGCCTGGAGGCGGTTCTCATCTCGGTTCAAATGGTGTCAAGTATGG 2269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2210 TAGCTATGTGCTGATGCCTGGAGGCGGTTCTCATCTCGGTTCAAATGGTGTCAAGTATGG 2269
Query 2270 AATCCATCAGCAATATAAACCAGTTCCAACTGGTGGACCTGCGGGTTTTGGGACTTACAA 2329
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2270 AATCCATCAGCAATATAAACCAGTTCCAACTGGTGGACCTACGGGTTTTGGGACTTACAA 2329
Query 2330 CAATCCTAATGGGTATCCAACTAATCCTCCCAATGTAGTTGGAAACGCTACGGGACTTGA 2389
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2330 CAATCCTAATGGGTATCCAATTAATCCTCCCAATGTAGTTGGAAACGCTACGGGACTTGA 2389
Query 2390 AGATCCATCTCGCATGATAA-ATAAACATGGAAATATTTACGTTCCAAATCCTCAGGCTG 2448
||||||||||||||||| || | ||| ||| ||||||||||| |||||||||||||||||
Sbjct 2390 AGATCCATCTCGCATGA-AATACAAAGATGTAAATATTTACGCTCCAAATCCTCAGGCTG 2448
Query 2449 AGACTTCTGAGATATGGATGCAAAATCCAAGAGATCTTTCAAGCCTTCAGTCTCCATATT 2508
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2449 AGACTTCTGAGATTTGGATGCAAAATCCAAGAGATCTTTCAAGCCTTCAGTCTCCATATT 2508
Query 2509 ACAACGTAGCTGGACAATCGCCTCATGGTGCTTATTTATCATCCCATACAGCACACCAAT 2568
|||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||
Sbjct 2509 ACAACGTAGCTGGACAATCGCCTCATGGCACTTATTTACCGTCCCATACAGCACACCAAT 2568
Query 2569 CGTTCAACCCAACTGCGCAATCATCTCACATGCAGTTCCAGGGTCTCTTCCACCCGTCAC 2628
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2569 CGTTCAACCCTGCTGCGCAATCATCTCACATGCAGTTCCAGGGTCTCTTCCACCCACCAC 2628
Query 2629 AGCCTGGTACGATGGCGAATCCGCACCACATGGGACCTGGCCTCAGTGGTAATGTTGGAG 2688
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2629 AGCCTGGTACAATGGCGAATCCGCACCACATGGGACCTGGCCTTGGTGGTAATGTTGGAG 2688
Query 2689 TCGGTGTCGTTCCCTCTCCTCCTCCGTCTCAAATTGGTACCTATCAGCAATCACAACTTG 2748
| || || || ||||||||||||||||||||| ||||||||||||| |||||||| ||||
Sbjct 2689 TTGGGGTTGTGCCCTCTCCTCCTCCGTCTCAAGTTGGTACCTATCAACAATCACACCTTG 2748
Query 2749 GTCATCCGAATTGGCCATCAAACTTCTGAAGAAAATCTAACCTTTGTCTTCTTGTCTAAT 2808
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 2749 GTCATCCGAATTGGCCAGCAAACTTCTGAACAAAATCTAACCTTTGTCTTCTTGTCTAAT 2808
Query 2809 GGATTATATAATAGCCAAAAGCAAATATTTTGATTCTCCTTATGAAACGCC-AAACTCTG 2867
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2809 GGATTATATAATAGCCAAAAGCAAATATTTTGATTCTCCTTATGAAACGCCCAAACTCTG 2868
Query 2868 TTTTAA-TTAATCTTTATTTATTCAATGCATAAAATGTTCCCAGCTCTC 2915
|||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 2869 TTTTAAATTAATCTT-ATTTATTCAATGCATAAAATGTTCCCAGCTCTC 2916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110042717805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5