BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14000.1
Length=1484
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478808 jgi|Araly1|478808|fgenesh2_kg.3__1509__AT3G14000.2 1978 0.0
> Ahg478808 jgi|Araly1|478808|fgenesh2_kg.3__1509__AT3G14000.2
Length=1710
Score = 1978 bits (1071), Expect = 0.0
Identities = 1316/1424 (92%), Gaps = 58/1424 (4%)
Strand=Plus/Plus
Query 24 AGGTCGAAATTGAAACTCTTTAGTGAGTGATAGAGATGCTGACATGCATAGCTTGTACGA 83
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 321 AGGTCG-AATTGAAACTCTTTAGTGAGTGAGAGAGATGCTGACATGCATAGCTTGT---- 375
Query 84 AGCAGCTAAACACCAACAATGGTGGATCTAAGAAACAAGAAGAGGATGAAGAAGAAGAAG 143
| | ||||||||||||||||||||||||||||||| | | ||||| |||||||| |
Sbjct 376 -TC-G---AACACCAACAATGGTGGATCTAAGAAACAAG-A-A-GATGATGAAGAAGACG 427
Query 144 ACAGAGTTATTGAAACACCCAGGTCTAAGCA---GATTAAGTCCCTGACGTCACAGATTA 200
|||||||||| | ||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 428 ACAGAGTTATCGGAACTCCTAGGTCTAAGCAGGCGATTAAGTCCCTGACGTCACAGATTA 487
Query 201 AAGACATGGCAGTAAAAGCATCAGGTGCTTACAAAAGCTGCAAACCGTGTTCTGGGTCGT 260
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 AAGACATGGCAGTGAAAGCATCAGGTGCTTACAAAAGCTGCAAACCGTGTTCTGGGTCGT 547
Query 261 CTAATCAGAATAAGAACCGAAGCTACGCTGATTCGGATGTTGCTTCGAATTCTGGGAGGT 320
| || |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 548 CAAACCAGAATAAGAACCGAAACTACGCTGATTCGGATGCTGCTTCGAATTCTGGGAGGT 607
Query 321 TTCGTTATGCGTACAAGAGAGCGGGGAGTGGAAGCTCAACACCGAAGATTTTGGGGAAGG 380
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 608 TTCGTTATGCGTACAAGAGAGCGGGGAGTGGTAGCTCAACACCGAAAATTTTGGGGAAGG 667
Query 381 AAATGGAGTCAAGGTTGAAAGGTTTTTTGAGTGGAGAAGGAACACCTGAATCCATGAGTG 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 AAATGGAGTCAAGGTTGAAAGGTTTTTTGAGTGGAGAAGGAACACCTGAATCCATGAGTG 727
Query 441 GTAGGACAGAGTCTACAGTGTTCATGGAGGAAGAAGATGAGCTCAAGGAATGGGTTGCTC 500
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 728 GTAGGACAGAGTCCACAGTATTCATGGAAGAAGAAGATGAGCTCAAGGAATGGGTTGCTC 787
Query 501 AAGTGGAGCCTGGTGTCCTCATCACATTTGTATCATTGCCTGAGGGAGGGAATGATATGA 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 AAGTGGAGCCTGGTGTCCTCATCACATTTGTATCATTGCCTGAGGGAGGGAATGATATGA 847
Query 561 AGCGGATTCGGTTCAGCCGTGAAATGTTCGATAAATGGCAAGCTCAAAAGTGGTGGGCGG 620
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 AGCGGATTCGTTTCAGCCGTGAAATGTTCGATAAATGGCAAGCTCAAAAGTGGTGGGCGG 907
Query 621 AGAATTTCGACAAGGTCATGGAATTATACAATGTACAGCAGTTCAATCAGCAGAGCGTCC 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 AGAATTTCGACAAGGTCATGGAATTATACAATGTACAGCAGTTCAATCAGCAGAGCGTCC 967
Query 681 CACTTCCAACTCCTCCTAGATCTGAAGATGGGAGCTCGCGAATTCAGTCTACCAAGAATG 740
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 968 CACTTCCAACTCCTCCTAGATCTGAAGATGGGAGCTCACGAATTCAGTCTACCAAGAACG 1027
Query 741 GTCCTGCAACTCCACCTCTGAACAAAGAATGCTCTCGAGGAAAAGGCTACGCTTCTTCTG 800
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1028 GTCCTGCAACTCCACCTCTGAACAAAGAAGGCCCTCGAGGAAAAGGCTACGCTTCTTCTG 1087
Query 801 GCTCACTCGCTCACCAACCAACAACCCAAACACAAAGTCGACACCATGATTCATCTGGTC 860
||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1088 GCTCAATCGCTCACCAAGCAACAACCCAAACACAAAGTCGACACCAAGATTCATCTGGTC 1147
Query 861 TTGCTACAACACCAAAACTCTCTAGCATAAGTGGGACAAAAACCGAGACATCATCTGTTG 920
|||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 1148 TTGCTACAACGCCAAAACTCTCAAGCATAAGTGGAACCAAAACCGAGACATCATCTGTTG 1207
Query 921 ATGAGTCTGCAAGAAGTAGCTTCTCAAGGGAAGAAGAAGAAG---CAGATCATTCAGGGG 977
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1208 ATGAGTCTGCAAGAAGTAGCTTCTCAAGGGAAGAAGAAGAAGAAGCAGATCATTCAGGGG 1267
Query 978 AGGAGCTATCTGTAAGTAATGCAAGTGACATTGAAACAGAATGGGTGGAACAGGACGAAG 1037
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 AG---CTCTCTGTAAGTAATGCAAGTGACATTGAAACAGAATGGGTGGAACAGGACGAAG 1324
Query 1038 CAGGTGTTTACATCACAATCAGAGCTTTACCAGATGGGACTCGCGAGCTTAGGCGTGTTC 1097
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1325 CCGGTGTTTACATCACAATCAGAGCTTTACCAGATGGGACTCGCGAGCTTAGGCGCGTTC 1384
Query 1098 GCTTCAGCCGAGAGAAGTTTGGGGAAACGAATGCAAGATTGTGGTGGGAGCAGAACAGAG 1157
|||||||||||||||||||||||| | || | | ||||||||||||||||||||||
Sbjct 1385 GCTTCAGCCGAGAGAAGTTTGGGG---C-AA-G-A---TTGTGGTGGGAGCAGAACAGAG 1435
Query 1158 CTCGGATACAACAACAATACTTGTGATGACCGATGACGGTCGAAGGCTCTCTAGAGAAGA 1217
|||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| ||
Sbjct 1436 CTCGGATACAACAACAATACTTGTGATGACCGATGATGGTTGAATGCTCTCTAGAG--GA 1493
Query 1218 ATCTGACACACACCAAAACAAAACAC-TTTTCTTTT-------ATATGTTTTACTTGGAA 1269
||||||||||| | |||||||||||| |||| |||| |||| |||||||||||
Sbjct 1494 ATCTGACACAC-C-AAAACAAAACACCTTTTTTTTTTTTTTTTATATTTTTTACTTGGAG 1551
Query 1270 AAAAGCTACAGAGTGATGGAAATAACTTGGGATTCAGATAATG-A---ATGTGCTTTTTA 1325
|||||||||||||||||||||||||||| || ||||||||||| | ||||||||||
Sbjct 1552 AAAAGCTACAGAGTGATGGAAATAACTTCGGCTTCAGATAATGCATGCATGTGCTTTTG- 1610
Query 1326 GTTGGTGGTTGTTAGTACATCTCTTT-CTCTTCTTTCTCATCTACATCTATCTATAAAGA 1384
|||||||||||||||| |||||||| |||||||||| ||| ||||||||| | || ||
Sbjct 1611 GTTGGTGGTTGTTAGTTGATCTCTTTTCTCTTCTTTCCCATTTACATCTAT--A-AA-GA 1666
Query 1385 GG-AG--GTATTAGT-TTT-ACTGGATTTTCTTGGTGTTATTTT 1423
|| | || ||| | ||| | ||||||||||||||||||||||
Sbjct 1667 GGTATTAGTTTTACTCTTTCAGTGGATTTTCTTGGTGTTATTTT 1710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55535577210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5