BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14010.1
Length=2346
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929172 jgi|Araly1|929172|scaffold_301629.1 2745 0.0
> Ahg929172 jgi|Araly1|929172|scaffold_301629.1
Length=1835
Score = 2745 bits (1486), Expect = 0.0
Identities = 1711/1817 (94%), Gaps = 26/1817 (1%)
Strand=Plus/Plus
Query 274 TATTCCTCAGTCGAAATCTTCATCAAATGGATTTCCACTCAAAAGAGGTGAAACAGAGGA 333
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 35 TATTCCTCAGTCGAAATCTTCATCAAATGGATTTCCACTCAAAAGAGGTGAAAGAGAGGA 94
Query 334 AGTTTTACATAAGACAAATACATCAAATACAGTATTCAATGGGGAAGCTGGAAGCTTGAA 393
||| ||| ||||| |||||||||| ||||||| ||||||||||||||||||||||||| |
Sbjct 95 AGTATTAAATAAGGCAAATACATCTAATACAGCATTCAATGGGGAAGCTGGAAGCTTGGA 154
Query 394 GAGGCTTTCACTTGATCGGTTAGTGTACT-TCACAACATGTAAGATCGGGCATCATGTGG 452
||||| ||| ||||||||||||||||| | || |||||||| | ||||||||||||||||
Sbjct 155 GAGGCCTTCGCTTGATCGGTTAGTGTA-TCTCTCAACATGTTATATCGGGCATCATGTGG 213
Query 453 AAGTGCATCTAAGGAATGGATCAGTGTATACCGGTATATTTCATGCTGCCAATGTAGAGA 512
||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 214 AAGTGCATCTAAGGAATGGATCAGTGTATACTGGTATTTTTCATGCTGCTGATGTAGAGA 273
Query 513 AGGATTTTGGAATCATTCTAAAGATGGCATGCTTGATTAAAGACGGTACTTTACGAGGAC 572
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 274 AGGATTTTGGAATCATTCTAAAGATGGCATGCTTGATTAAAGATGGTACTTTACGAGGGC 333
Query 573 ATAAATCCCGTTCCGAATTTGTCAGGAAGCCGCCTTCCAAGACATTCATTATTCCGGCAG 632
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 334 ATAAATCCCGTTCCGAATTTGTCAGAAAGCCGCCTTCCAAGACGTTCATTATTCCGGCAG 393
Query 633 ATGAACTTGTGCAAGTTATAGCTAAGGATCTCTCTGTATCCTCGAACAACATGTCAAATG 692
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 394 ATGAACTTGTGCAAGTTATAGCTAAGGATCTCTCTGTATCCTCGACCAACATGTCAAATG 453
Query 693 CGGTTCAGGGTGAGAAACCATCGGAGCTGTTGACAGACTCTTCTATATCACAGTCTTATC 752
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 454 CGGTTCAGGGTGAGAAACCAGCGGAGCTGTTGACAGACTCTTCTATATCACAGTCTTATC 513
Query 753 ATGTTGATCGGGAAAGGCAGCTGCAACGCTGGGTACCTGATGAGACTATTCCACACGGTG 812
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 514 ATGTTGATCGGGAAAGACAGCTGCAACCCTGGGTACCTGATGAGACTATTCCACAGGGTG 573
Query 813 CAGATTTGGAGAATGTGTTTGATAACCCTTGGAATAGGAAATGGAATCAGTTTGAGGTGA 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 CAGATTTGGAGAATGTGTTTGATAACCCTTGGAATAGGAAATGGAATCAGTTTGAGGTGA 633
Query 873 ATAAGTCACTGTTTGGAGTAAAAAGCACTTTCGACGAGGACCTCTATACCACAAGACTTG 932
|| ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 634 ATGAGTCACTGTTTGGAGTAAAGAGTACTTTCGACGAGGAAATCTATACCACAAGACTTG 693
Query 933 AGAGAGGTCCTCAGACTAAACAGTTGGAAGAGCATGCCCAGAAGATTGCGAGAGAGATCG 992
||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 694 AGAGAGGCCCTCAGACTAAACAGTTGGAAGAGCAAGCCCGGAAGATTGCGAGAGAGATCG 753
Query 993 AGGCTGAGACTACCCGAGATATTCATGTAGCAGAGGAAAGAGGCCTTCAGCTTAATGAGA 1052
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 754 AGGCTGAGACTACCCGAGATCTTCATGTAGCAGAGGAAAGAGGCCTTCAGCTTAATGAGA 813
Query 1053 ACTTTGATTTTGACGAGGAAGCCAGATACTCATCTGTCCGTCCAGTCACTGGATTTGGTG 1112
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 814 ACTTTGATTTTGACGAGGAAGCCAGATACTCATCGGTCCGTCCAGTTACTGGATTTGGTG 873
Query 1113 ATAGTGGGTTTGATTTGGAGGACAACGCATTGCTGGATACTTGCAACGATCTGACTTTTG 1172
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 ATAGTGGGTTTGATGAGGAGGACAACGCATTGCTGGATACTTGCAACGATCTGACTTTTG 933
Query 1173 GTGGCTCATCTACTTCTGATGGCCAGAAGCCAGCTTCTAGTGGCAAGGGCTGTGAAGAAT 1232
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 934 GTGGTTCATCTACTTCTGATGGCCAGAAGCCAGCTTCTAGTGGCAAGGGTTGTGAAGAAT 993
Query 1233 TACGGGTATCGGGTGACAGTCAGTCTTCTCGGAAAAATAAAAATGTAGATCAAAGCTGCT 1292
|||||| | || |||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 994 TACGGGG-T-GG----CAGTCAGTCTTCTCGGAATAATACAAATGTAGATCAAAGCTGCT 1047
Query 1293 CAACCTCTAAACAGCAATCCAAAGATTTTCCTGCCGCAGGCAGCAATATCAGTGAGAGCC 1352
| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1048 CGACCTCTAAACAACAATCCAAATATTTTCCTGCCGCAGGCAGCAATATCAGTGAGAGCC 1107
Query 1353 AGCTAGATGAGCAAAGAAGAAAGAATAACGAAGAGGTTTCACACAATAACAGATCAGCTG 1412
|||||||||||| ||||||||| |||||| ||||| | |||||||||||||||||||||
Sbjct 1108 AGCTAGATGAGCGAAGAAGAAACAATAACCAAGAG-T--CACACAATAACAGATCAGCTG 1164
Query 1413 AGGAATCAACTTCTGGTCATGGAGATATCAAAGAAGGTGCAAAATCTGGTGGTGGTGCAT 1472
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1165 AGGAATCAACTTCTGGTCATGGAGATATCAAAGAAGGTGCAAAATTTGGTGGTGGTGCAA 1224
Query 1473 CCTCGGTGTCTAAGGCTGTTACTGAGAGAGAAAGAGAAGCCAGTCAAGTTTCTAGTAAAA 1532
| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1225 CTTCGGTGTCGAAGGCTGTTACTGAGAGAGAAAGAGAAGCCAGTCAAATTTCTAGTAAAA 1284
Query 1533 CAAAATCTGAAAGCTCTTTCGGGCAGTCTGCTTCTAGAAGTTCAGAAAGTCGCCCAGGTC 1592
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1285 CAAAATCTGAAAGCTCTTTTGGGCAGTCGGCTTCTAGAAGTTCAGAAAGTCGCCCAGGTC 1344
Query 1593 CTTCAACATCAAGTCGTCCTGGGCTATCACCGAGCTCGTCAATTGGTTCTATGGCCTCAT 1652
|||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1345 CTTCAACATCAACTCGTCCTGGGTTATCACCGAGCTCGTCAATTGGTTCTATGACCTCAT 1404
Query 1653 CAGAAAAGTCCACACTGAATCCGAATGCAAAGGAATTCAAACTCAATCCAAAGGCTAAGA 1712
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1405 CAGAAAAGTCCACACTTAATCCGAATGCAAAGGAATTCAAACTCAATCCAAACGCGAAGA 1464
Query 1713 GTTTCAAACCATTGCAGTCAGCTGCTGCACCACCTCAATCTCCAATCGCAGATGCCTCAT 1772
|||||||||||||||| |||||| || | ||||||||||||| | ||||||||||||
Sbjct 1465 GTTTCAAACCATTGCAACCAGCTGTTGTGCGACCTCAATCTCCAGTTTCAGATGCCTCAT 1524
Query 1773 TCTACTACCCTGGTCCTAGTCATGTTCCT---GTTCAGCAGATGCCTGGAATGCCGCCTG 1829
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1525 TCTACTACCCTGGTCCTAGTCATGTTCCTCCTGTTCAGCAGATGCCTGGAATGCCGCCTG 1584
Query 1830 TTAATTACGGACTCCCGCCATATCCTGGCAACCAACCACAGATGATGTATCATCCTCAAG 1889
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1585 TTAATTACGGAGTCCCGCCATATCCTGGCAACCAACCACCGATGATGTATCATCCTCAAG 1644
Query 1890 CCTATTATCATCCAAATGGACAACCTCAGTACCCACAGCAGCAAATGATACCTGGTCAGC 1949
||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 1645 CCTATTATCATCCGAATGGACAACCTCAGTATCCGCAGCAGCAAATGATGCCTGGTCAGC 1704
Query 1950 AGCAGCAGCAAATGATACCTGGTCAGCAGCATCCTAGGCCAGTTTATTACATGCA---TC 2006
||||||| || |||| ||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 1705 AGCAGCA--AA-TGATGCCTGGCCAGCAGCAGCCTAGGCCAGTTTATTACATGCAGCATC 1761
Query 2007 CTCCTCCT--T-ACCCGCAGGACATGCCATATCATAATAAAGGACGAGAGTAATAACTAC 2063
|||||||| | |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1762 CTCCTCCTCCTTACCCGCAGGACATGCCATATCATAATAAAGGACGAGAGTAAT---TAC 1818
Query 2064 TACTACCCGATGGTGAT 2080
|||||||||||||||||
Sbjct 1819 TACTACCCGATGGTGAT 1835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88369368400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5