BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14020.1
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904328 jgi|Araly1|904328|Al_scaffold_0003_1456 1260 0.0
Ahg359494 jgi|Araly1|359494|fgenesh1_pg.C_scaffold_286000001 870 0.0
> Ahg904328 jgi|Araly1|904328|Al_scaffold_0003_1456
Length=948
Score = 1260 bits (682), Expect = 0.0
Identities = 869/954 (91%), Gaps = 33/954 (3%)
Strand=Plus/Plus
Query 315 ATGCAAGAGTTCCATAGTAGCAAAGATTCATTGCCTTGTCCTGCAACTTCTTGGGATAAC 374
||||||||||| | | |||||||| |||||||||| ||||| |||||||||||| |||
Sbjct 1 ATGCAAGAGTTTC--A-CAGCAAAGAATCATTGCCTTATCCTGTAACTTCTTGGGAAAAC 57
Query 375 TCTGTCTTCACCAACTCAAATGTCCAAGGATCATCATCCTTGACCGATAACAACACTTTA 434
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 58 TCTGTCGTCACCAACTCAAATGTCCAAGGATCATCATCCATGACCGATAACAACACTTTA 117
Query 435 AGC-------T-----TGA---C-A---A--T---GGAGATGAAACAAACTGGTTTTCAA 470
||| | ||| | | | | |||||||||||||||||||||||
Sbjct 118 AGCTTGAAGATGGAGATGATGTCTACCCATTTCCCTGAGATGAAACAAACTGGTTTTCAT 177
Query 471 ATGCAGC-ACTATGATTCCTCCTCTACTCAATCCACTGGAGGAGAATCATATAGTGAAGT 529
|||| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TTGCA-CGACCATGATTCCTCCTCTACTCAATCCACTGGAGGAGAATCATATAGTGAAGT 236
Query 530 TGCTAGCTTAAGTGAACCTACTAATCGTTATGGCCACAACATTGTTGTCACTCATCTCTC 589
||| |||||||| ||||||| ||||||||||| ||||||||||||||| ||||| |||||
Sbjct 237 TGCGAGCTTAAGCGAACCTAATAATCGTTATGACCACAACATTGTTGTTACTCAACTCTC 296
Query 590 AGGTTACAAAGAAAACCCGGAAAATCCTATTGGAAGTCATTCGATA-TCAAAGGTGTCTC 648
||||||||||||||||| ||| |||||||||||||||||||||| | || ||||||||||
Sbjct 297 AGGTTACAAAGAAAACCTGGAGAATCCTATTGGAAGTCATTCGA-AGTCGAAGGTGTCTC 355
Query 649 AAGATTCAGTGGTTCTTCCTATTGAGGCGGCTTCTTGGCCTTTACACGGCAATGTAACGC 708
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 356 AAGATTCAGTGGTTCTTCCTATTGAGGCGTCTTCTTGGCCTTTACACGGCAATGTAACAC 415
Query 709 CACATTTCAATGGTTTCTTGTCTTTTCCTTATGCATCACAACACACGGTGCAGCATCCTC 768
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 416 CACATTTCAATGGTTTCTTGTCTTTTCCGTATGCATCACAACACATGGTGCAGCATCCTC 475
Query 769 AAATCAGAGGGTTGGTTCCGTCTAGAATGCCTTTGCCTCACAACATTCCAGAGAACGAAC 828
|||| ||||||||||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct 476 AAATTGGAGGGTTGGTTCCTTGTAGAGTGCCTTTGCCTCACAACATTCCAGAGAACGAAC 535
Query 829 CAATTTTCGTCAATGCAAAACAGTACCAAGCCATTCTCCGCCGCAGAGAGCGCCGTGCAA 888
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 536 CAATTTTCGTCAATGCAAAACAGTACCAAGCCATTCTCCGCCGCAGACAGCGCCGTGCAA 595
Query 889 AGCTTGAAGCTCAGAACAAGCTCATCAAAGTCCGCAAACCATATCTTCACGAGTCGCGGC 948
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 596 AGCTTGAAGCTCAGAACAAGCTCATCAAAGTCCGCAAACCATACCTTCACGAGTCGCGCC 655
Query 949 ACCTCCATGCACTAAAGAGAGTTAGAGGCTCTGGTGGACGTTTCCTCAACACAAAGAAGC 1008
|||| ||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 656 ACCTTCATGCGTTAAAGAGAGCTAGAGGCTCTGGTGGGCGTTTCCTCAACACAAAGAAGC 715
Query 1009 ATCAAGAATCAAATTCCTCACTATCTCCTCCATTCTTG-ATTCCACCTCATGTCTTCAAG 1067
|||||||||||| || |||| | |||||||||||||| || ||||| ||||||||||||
Sbjct 716 TTCAAGAATCAAAATCTTCACAAGCTCCTCCATTCTTGGAT-CCACCGCATGTCTTCAAG 774
Query 1068 AACTCTCCAGGAAAGTTCCGGCAAATGGACATTTCAAGGGGTGGGGTTGTGTCTAGTGTC 1127
|||||||||||||| ||||||||| ||||||||||||||||||||| | |||||||| |
Sbjct 775 AACTCTCCAGGAAAATTCCGGCAACGGGACATTTCAAGGGGTGGGGTCGGGTCTAGTGGC 834
Query 1128 TCGACAACATCTTGCTCGGACATAACCGGGAACAACAACGACATGTTCCAGCAAAACCCA 1187
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 835 TCGACAACATCTTGCTCGGACATAACCGGGAACAACAACGACATGTTCCAACAAAACCCA 894
Query 1188 CAATTCAGGTTCTCAGGTTATCCATCAAACCACCATGTCTCAGTCCTCATGTGA 1241
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CAATTCGGGTTCTCAGGTTATCCATCAAACCACCATGTCTCAGTCCTCATGTGA 948
> Ahg359494 jgi|Araly1|359494|fgenesh1_pg.C_scaffold_286000001
Length=567
Score = 870 bits (471), Expect = 0.0
Identities = 536/568 (94%), Gaps = 2/568 (0%)
Strand=Plus/Plus
Query 675 GCGGCTTCTTGGCCTTTACACGGCAATGTAACGCCACATTTCAATGGTTTCTTGTCTTTT 734
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 GCGGCTTCTTGGCCTTTACACGGCAATGTAACACCACATTTCAATGGTTTCTTGTCTTTT 60
Query 735 CCTTATGCATCACAACACACGGTGCAGCATCCTCAAATCAGAGGGTTGGTTCCGTCTAGA 794
|| |||||||||||||||| |||||||||||||||||| ||||||||||||| | ||||
Sbjct 61 CCGTATGCATCACAACACATGGTGCAGCATCCTCAAATTGGAGGGTTGGTTCCTTGTAGA 120
Query 795 ATGCCTTTGCCTCACAACATTCCAGAGAACGAACCAATTTTCGTCAATGCAAAACAGTAC 854
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTGCCTTTGCCTCACAACATTCCAGAGAACGAACCAATTTTCGTCAATGCAAAACAGTAC 180
Query 855 CAAGCCATTCTCCGCCGCAGAGAGCGCCGTGCAAAGCTTGAAGCTCAGAACAAGCTCATC 914
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAAGCCATTCTCCGCCGCAGACAGCGCCGTGCAAAGCTTGAAGCTCAGAACAAGCTCATC 240
Query 915 AAAGTCCGCAAACCATATCTTCACGAGTCGCGGCACCTCCATGCACTAAAGAGAGTTAGA 974
||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||| ||||
Sbjct 241 AAAGTCCGCAAACCATACCTTCACGAGTCGCGCCACCTTCATGCGTTAAAGAGAGCTAGA 300
Query 975 GGCTCTGGTGGACGTTTCCTCAACACAAAGAAGCATCAAGAATCAAATTCCTCACTATCT 1034
||||||||||| |||||||||||||||||||||| |||||||||||| || |||| | ||
Sbjct 301 GGCTCTGGTGGGCGTTTCCTCAACACAAAGAAGCTTCAAGAATCAAAATCTTCACAAGCT 360
Query 1035 CCTCCATTCTTG-ATTCCACCTCATGTCTTCAAGAACTCTCCAGGAAAGTTCCGGCAAAT 1093
|||||||||||| || ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 361 CCTCCATTCTTGGAT-CCACCGCATGTCTTCAAGAACTCTCCAGGAAAATTCCGGCAACG 419
Query 1094 GGACATTTCAAGGGGTGGGGTTGTGTCTAGTGTCTCGACAACATCTTGCTCGGACATAAC 1153
||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 420 GGACATTTCAAGGGGTGGGGTCGGGTCTAGTGGCTCGACAACATCTTGCTCGGACATAAC 479
Query 1154 CGGGAACAACAACGACATGTTCCAGCAAAACCCACAATTCAGGTTCTCAGGTTATCCATC 1213
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 480 CGGGAACAACAACGACATGTTCCAACAAAACCCACAATTCGGGTTCTCAGGTTATCCATC 539
Query 1214 AAACCACCATGTCTCAGTCCTCATGTGA 1241
||||||||||||||||||||||||||||
Sbjct 540 AAACCACCATGTCTCAGTCCTCATGTGA 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46357467072
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5