BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14030.1
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312135 jgi|Araly1|312135|fgenesh1_pm.C_scaffold_1000915 344 5e-94
Ahg478813 jgi|Araly1|478813|fgenesh2_kg.3__1514__AT3G14030.1 294 5e-79
Ahg951995 jgi|Araly1|951995|scaffold_28600002.1 279 1e-74
Ahg929120 jgi|Araly1|929120|scaffold_301577.1 183 1e-45
Ahg929516 jgi|Araly1|929516|scaffold_301973.1 78.7 6e-14
Ahg929515 jgi|Araly1|929515|scaffold_301972.1 75.0 7e-13
Ahg480740 jgi|Araly1|480740|fgenesh2_kg.3__3441__AT2G18320.1 73.1 3e-12
> Ahg312135 jgi|Araly1|312135|fgenesh1_pm.C_scaffold_1000915
Length=1782
Score = 344 bits (186), Expect = 5e-94
Identities = 561/733 (77%), Gaps = 62/733 (8%)
Strand=Plus/Plus
Query 36 TGGAATCCTTGTTTGGGACAAACGAGATGGATCCAACCCAAAAACAATTTCCATAGACTA 95
|||||||||| |||||| |||||||| ||||||||||||| | | | |||||| ||| ||
Sbjct 1048 TGGAATCCTTATTTGGGGCAAACGAGGTGGATCCAACCCAGACAGAGTTTCCACAGATTA 1107
Query 96 GAC-G-TATGCTCTTGGATACGACAACAACCTCGTAACCACAAAATCTTGAGGTTTGTGA 153
||| | |||||||||||| | |||||||| | |||| |||||||||||||||||||||
Sbjct 1108 GACAGTTATGCTCTTGGACATGACAACAA-C-GGTAAACACAAAATCTTGAGGTTTGTGG 1165
Query 154 ATGATTACCTCA-CTTTCGAAACAAAGTTTTTGGGGAAATACTTACTTTTACGCTCAAGA 212
|||| || || | || || ||| || | | |||||| |||||||||| |||| || |
Sbjct 1166 ATGA-TATCTTACCTGTC-AAA-AACG----T-GGGAAACACTTACTTTTTCGCTAAACA 1217
Query 213 AAAAGCAACGGTGGAAGGAGAAGGAATGGAAGAGGTCGACGTAGATACAACGTATCTTCC 272
| | || | ||||||| | | || | || ||| |||||| ||| | ||
Sbjct 1218 GAGATTAATATTTGAAGGAG-A-G---GG-ACCTGTAGACATAGATATAAC--AGAGACC 1269
Query 273 --AG-TTTTTCTACTCTGTTTTGATTTTACAGCAGAGAGATTTGGACCGCGTCTTCCTCT 329
|| |||| ||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1270 GAAGACTTTT-TACTCTGTTTTGATTTTACTGCTGAGAGATTTGGACCGCGTCTTCCTCT 1328
Query 330 TCCGTTTCACTCTCATGATAACTCTCATGATGAAGAGATTGTGTCTCTATTC-TGTGTCA 388
||| ||||||||| | || | || || |||| |||| ||||| || ||||| |
Sbjct 1329 TCCTTTTCACTCT--T-AT---T-TC-----GACGAGACTGTGACTCTA-TCTTGTGTTA 1375
Query 389 AAGAGGAGCAGCTCGCTGTGTTACATCAAAACTT--TG-C---T-AGATGCTTGGAGATT 441
|||| || |||||| | | ||| | || ||| || | | |||| | ||||||||
Sbjct 1376 AAGAAGATCAGCTCTCCATCTTATACCAGCCCTTGGTGCCATATGAGAT-CATGGAGATT 1434
Query 442 TGGATTACCACCAAGATCGAGCCTAGTGCGGTGTCTTGGAGCATGTTTTTGAAAGTGGAT 501
||| || |||| || || ||||| | ||| ||||| ||||||||||||||||||||||||
Sbjct 1435 TGGGTTTCCACTAATATTGAGCCCAATGCTGTGTCGTGGAGCATGTTTTTGAAAGTGGAT 1494
Query 502 ATGAGACCACTCACTGGCTTTAAGTGTCATGTTGAAG-CTGGGAGTTTCTTTGTTGACGA 560
||||||||||||||||| ||| ||| | | ||| | | ||||||||||||| ||||| |
Sbjct 1495 ATGAGACCACTCACTGGTTTTCAGTTTGACGTT-ATGGCTGGGAGTTTCTTCATTGACCA 1553
Query 561 GGAGAAGAAAGTCGCCATGGTTTTCGATCTAGACGGACGTAAA-AAGACCGAGACTTGCC 619
|||||| ||||||||| ||||||| ||||| ||| | | | || ||| ||| | |
Sbjct 1554 GGAGAACAAAGTCGCCGTGGTTTTTGATCTTGACCCATATCCACAAT-CCGTGACCCGTC 1612
Query 620 GCTACCAGACAGCTCACATCATTGGACAAGATGG---ATACTTCAAATCTGT-GAATATC 675
||||||| |||||| ||||||||||||||||||| ||||||||||||||| || ||||
Sbjct 1613 GCTACCAAACAGCTTACATCATTGGACAAGATGGTGGATACTTCAAATCTGTTGA-TATC 1671
Query 676 CGAGAAGCAC-AGAATCTCGGGAAACCTGACATATTTGGATACACT--CCTTCCATTTAT 732
||||||| | | ||| || || || ||||| | ||||| | | || |||| |||
Sbjct 1672 GGAGAAGCTCCA-AATATCATGACACGTGACAGCTACGGATATATTGGCC--CCATGTAT 1728
Query 733 TGTGTCCCACTTG 745
|||||||| ||||
Sbjct 1729 TGTGTCCCGCTTG 1741
> Ahg478813 jgi|Araly1|478813|fgenesh2_kg.3__1514__AT3G14030.1
Length=672
Score = 294 bits (159), Expect = 5e-79
Identities = 197/215 (92%), Gaps = 3/215 (1%)
Strand=Plus/Plus
Query 533 TTGAAGCTGGGAG-TTTCTTTGTTGACGAGGAGAAGAAAGTCGCCATGGTTTTCGATCTA 591
||||| ||||||| ||||||| |||| || ||||||||||||||| ||||||||||||||
Sbjct 418 TTGAAACTGGGAGTTTTCTTTATTGATGACGAGAAGAAAGTCGCCGTGGTTTTCGATCTA 477
Query 592 GACGGACGTAAAAAGACCGAGACTTGCCGCTACCAGACAGCTCACATCATTGGACAAGAT 651
|||||| |||||||||||||||||| |||||||| ||||||||||||||||||||| ||
Sbjct 478 GACGGATATAAAAAGACCGAGACTTGTCGCTACCAAACAGCTCACATCATTGGACAATAT 537
Query 652 GGATACTTCAAATCTGTGAATATCCGAGAAGCACAGAATCTCGGGAAACCTGACATATTT 711
|||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||
Sbjct 538 GGATACTTCAAATCTGTGAATATCCGAGAAGCTCCGAATCTCGGGAAACCTGACAGATTT 597
Query 712 GGATACACTC-CTTCCATTTATTGTGTCCCACTTG 745
|||| |||| || |||||||||||||||||||||
Sbjct 598 GGATTTACTCTCT-CCATTTATTGTGTCCCACTTG 631
Score = 263 bits (142), Expect = 1e-69
Identities = 211/242 (87%), Gaps = 14/242 (6%)
Strand=Plus/Plus
Query 259 ACAACGTATCTTCCAGTTTTTCTACTCTGTTTTGATTTTACAGCAGAGAGATTTGGACCG 318
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 ACAACACATCTTCCCGTTTTTCTACTCTGTTTTGATTTTACAGCAGAGAGATTTGGACCG 258
Query 319 CGTCTTCCTCTTCCGTTTCACTCTCATGATAACTCTCATGATGAAGAGATTGTGTCTCTA 378
||||||||||| ||| | | || |||||||||||||||||||||||||||||
Sbjct 259 CGTCTTCCTCTACCG--T---T-TC------ACTCTCATGATGAAGAGATTGTGTCTCTA 306
Query 379 TTCT-GTGTCAAAGAGGAGCAGCTCGCTGTGTTACATCAAAACTTTGCTAGATGCTTGGA 437
| || |||||||||| |||||||| ||||||||| ||||||||| ||||| |||||||||
Sbjct 307 T-CTTGTGTCAAAGAAGAGCAGCTAGCTGTGTTATATCAAAACTATGCTATATGCTTGGA 365
Query 438 GATTTGGATTACCACCAAGATCGAGCCTAGTGCGGTGTCTTGGAGCATGTTTTTGAAAGT 497
||||||||||| || | ||||||||||| |||| |||||||||||| |||||||||| |
Sbjct 366 CATTTGGATTACGACGATGATCGAGCCTACTGCGCTGTCTTGGAGCAAGTTTTTGAAACT 425
Query 498 GG 499
||
Sbjct 426 GG 427
> Ahg951995 jgi|Araly1|951995|scaffold_28600002.1
Length=555
Score = 279 bits (151), Expect = 1e-74
Identities = 192/211 (91%), Gaps = 5/211 (2%)
Strand=Plus/Plus
Query 539 CTGGGAG-TTTCTTTGTTGACGAGGAGAAGAAAGTCGCCATGGTTTTCGATCTAGACGGA 597
||||||| ||||||| |||| || ||||||||||||||| ||||||||||||||||||||
Sbjct 297 CTGGGAGTTTTCTTTATTGATGACGAGAAGAAAGTCGCCGTGGTTTTCGATCTAGACGGA 356
Query 598 CGTAAAAAGACCGAGACTTGCCGCTACCAGACAGCTCACATCATTGGACAAGATGGATAC 657
|||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||
Sbjct 357 TATAAAAAGACCGAGACTTGTCGCTACCAAACAGCTCACATCATTGGACAATATGGATAC 416
Query 658 TTCAAATCTGTGAATATCCGAGAAGCACAGAATCTCGGGAAACCTGAC-ATATTTGGATA 716
|||||||||||||||||||||||||| | ||||||||||||||||||| | ||||||||
Sbjct 417 TTCAAATCTGTGAATATCCGAGAAGCTCCGAATCTCGGGAAACCTGACCAGATTTGGATT 476
Query 717 C-ACTC-CTTCCATTTATTGTGTCCCACTTG 745
|||| || |||||||||||||||||||||
Sbjct 477 TTACTCTCT-CCATTTATTGTGTCCCACTTG 506
Score = 156 bits (84), Expect = 3e-37
Identities = 133/154 (86%), Gaps = 14/154 (9%)
Strand=Plus/Plus
Query 249 CGACGTAGATACAACGTATCTTCCAGTTTTTCTACTCTGTTTTGATTTTACAGCAGAGAG 308
|||||||||||| || ||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 155 CGACGTAGATACCACACATCTTCCCGTTATTCTACTCTGTTTTGATTTTACAGCAGAGAG 214
Query 309 ATTTGGACCGCGTCTTCCTCTTCCGTTTCACTCTCATGATAACTCTCATGATGAAGAGAT 368
||||||||||||||||||||| |||||||||||||||||| || | |||||
Sbjct 215 ATTTGGACCGCGTCTTCCTCTACCGTTTCACTCTCATGAT---------GA--A-GAGAT 262
Query 369 TGTGTCTCTATTCT-GTGTCAAAGAGGAGCAGCT 401
||||||||||| || |||||||||| ||||||||
Sbjct 263 TGTGTCTCTAT-CTTGTGTCAAAGAAGAGCAGCT 295
> Ahg929120 jgi|Araly1|929120|scaffold_301577.1
Length=1237
Score = 183 bits (99), Expect = 1e-45
Identities = 337/444 (76%), Gaps = 48/444 (11%)
Strand=Plus/Plus
Query 275 TTTTTCTACTCTGTTTTGATTTTAC-AGCAGAGAGATTTGGACCGCGTCTTCCTCTTCCG 333
||||| || |||| ||||||||||| || ||||||||||||||||| ||| ||||| |||
Sbjct 677 TTTTT-TAGTCTGCTTTGATTTTACAAG-AGAGAGATTTGGACCGCTTCTCCCTCTGCCG 734
Query 334 TTTCACTCTCATGATAACTCTCATGATGAAGAGATTGTGTCTCTATTC-TGTGTCAAAGA 392
||||||||| | | || | | | | | | ||||||||||| || ||||| | |||
Sbjct 735 TTTCACTCT--T-ACAA-TGT--T-A-G-ACTTTTTGTGTCTCTA-TCTTGTGTTAGAGA 784
Query 393 GGAGCAGCTCGCTGTGTTACATCAAAACTTTG---C-TA-GAT--G-C-TTGGAGATTTG 443
|||||||||||||||||| ||||| ||| | | || ||| | | | ||| ||||
Sbjct 785 CGAGCAGCTCGCTGTGTTATATCAACGCTTGGACACATATGATGGGACAGTCGAGTTTTG 844
Query 444 -GATTACCA-CCAAGATCGAGCCTAGTGCGGTGTCTTGGAGCATGTTTTTGAAAGTGGAT 501
| ||| || ||||| || || | ||| ||||||||||||||||||||| || |
Sbjct 845 TG-TTA-CAGATAAGATTGATCCCAATGCTGTGTCTTGGAGCATGTTTTTG-AA----AC 897
Query 502 ATGAGACCACTCACTGGCTTTA-AGTGT-CATGTTGAAGCTGGGAGTTTCTTT-GTTGAC 558
| || ||| ||| |||| || | | ||| ||||||||||| ||| | |||
Sbjct 898 A--AG-----TCATTGGTTTTACGGT-TAAACCTTG-TGCTGGGAGTTT-TTTCATCGAC 947
Query 559 GAGGAGAAGAAAGTCGCCATGGTTTTCGATCTAGACGGACGTAAAAAGACCGA-GACTTG 617
| ||||||||||||||| ||||||||||| |||| | | ||||||| | | || ||
Sbjct 948 CAAGAGAAGAAAGTCGCCGTGGTTTTCGATATAGATGTATATAAAAAGGTCAAGGA-ATG 1006
Query 618 CCGCTACCAGACAGCTCACATCATTGGACAAGATGGATACTTCAAATCTGTGAATATCCG 677
||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1007 TCGCTATCAAACAGCTTACATCATTGGACAAGATGGATACTTCAAATCTGTGAATATCGG 1066
Query 678 AGAAGCACAGAATCTCGGGA-AAC 700
| |||| | | ||||||||| |||
Sbjct 1067 ACAAGCTCGGGATCTCGGGAGAAC 1090
> Ahg929516 jgi|Araly1|929516|scaffold_301973.1
Length=1193
Score = 78.7 bits (42), Expect = 6e-14
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 540 TGGGAGTTTCTTTGTTGACGAGGAGAAGAAAGTCGCCATGGTTTT 584
||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 977 TGGGAGTTTCTTTGTTGACGAGGAGAAGAAAGTCGCCGTGGTTTT 1021
> Ahg929515 jgi|Araly1|929515|scaffold_301972.1
Length=943
Score = 75.0 bits (40), Expect = 7e-13
Identities = 117/152 (77%), Gaps = 14/152 (9%)
Strand=Plus/Plus
Query 434 TGGAGATTTGGATTACCACCAAGATCGAGCCTAGTGCGGTGT-CT--TGGAGCATGTT-T 489
||||||| |||||||| || |||| ||||| | | ||||| | |||||| ||| |
Sbjct 760 TGGAGATATGGATTACGACTGAGATTGAGCCCAAAGAGGTGTGGTGGGGGAGCAAGTTGT 819
Query 490 T-TGAA-AGTGGATATGAGA-CCACTCACTGGCTT-T-AAGTGTCATGTTGAAGC-TGGG 543
| | || ||| |||| | | ||||| ||| | || | || | ||| ||||| | ||||
Sbjct 820 TCTTAACGGTGAATAT-AAATCCACTTACTTG-TTATCAATTCCCAT-TTGAA-CGTGGG 875
Query 544 AGTTTCTTTGTTGACGAGGAGAAGAAAGTCGC 575
||||||||||||||||||||||||||||||||
Sbjct 876 AGTTTCTTTGTTGACGAGGAGAAGAAAGTCGC 907
> Ahg480740 jgi|Araly1|480740|fgenesh2_kg.3__3441__AT2G18320.1
Length=1035
Score = 73.1 bits (39), Expect = 3e-12
Identities = 64/75 (85%), Gaps = 5/75 (7%)
Strand=Plus/Plus
Query 277 TTTC-TACTCTGTTTTGATTTTACAGCAGAGAGATTTGGACCGCGT-CTTCCTCTTCCGT 334
|||| || | ||||||||||||||||||||||||||||||| | || |||||||| || |
Sbjct 660 TTTCTTAATATGTTTTGATTTTACAGCAGAGAGATTTGGACAG-GTTCTTCCTCTGCCAT 718
Query 335 TTCA-CTCTCATGAT 348
|||| | |||||||
Sbjct 719 TTCAGCA-TCATGAT 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27867852327
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5