BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G14030.1 Length=756 Score E Sequences producing significant alignments: (Bits) Value Ahg312135 jgi|Araly1|312135|fgenesh1_pm.C_scaffold_1000915 344 5e-94 Ahg478813 jgi|Araly1|478813|fgenesh2_kg.3__1514__AT3G14030.1 294 5e-79 Ahg951995 jgi|Araly1|951995|scaffold_28600002.1 279 1e-74 Ahg929120 jgi|Araly1|929120|scaffold_301577.1 183 1e-45 Ahg929516 jgi|Araly1|929516|scaffold_301973.1 78.7 6e-14 Ahg929515 jgi|Araly1|929515|scaffold_301972.1 75.0 7e-13 Ahg480740 jgi|Araly1|480740|fgenesh2_kg.3__3441__AT2G18320.1 73.1 3e-12 > Ahg312135 jgi|Araly1|312135|fgenesh1_pm.C_scaffold_1000915 Length=1782 Score = 344 bits (186), Expect = 5e-94 Identities = 561/733 (77%), Gaps = 62/733 (8%) Strand=Plus/Plus Query 36 TGGAATCCTTGTTTGGGACAAACGAGATGGATCCAACCCAAAAACAATTTCCATAGACTA 95 |||||||||| |||||| |||||||| ||||||||||||| | | | |||||| ||| || Sbjct 1048 TGGAATCCTTATTTGGGGCAAACGAGGTGGATCCAACCCAGACAGAGTTTCCACAGATTA 1107 Query 96 GAC-G-TATGCTCTTGGATACGACAACAACCTCGTAACCACAAAATCTTGAGGTTTGTGA 153 ||| | |||||||||||| | |||||||| | |||| ||||||||||||||||||||| Sbjct 1108 GACAGTTATGCTCTTGGACATGACAACAA-C-GGTAAACACAAAATCTTGAGGTTTGTGG 1165 Query 154 ATGATTACCTCA-CTTTCGAAACAAAGTTTTTGGGGAAATACTTACTTTTACGCTCAAGA 212 |||| || || | || || ||| || | | |||||| |||||||||| |||| || | Sbjct 1166 ATGA-TATCTTACCTGTC-AAA-AACG----T-GGGAAACACTTACTTTTTCGCTAAACA 1217 Query 213 AAAAGCAACGGTGGAAGGAGAAGGAATGGAAGAGGTCGACGTAGATACAACGTATCTTCC 272 | | || | ||||||| | | || | || ||| |||||| ||| | || Sbjct 1218 GAGATTAATATTTGAAGGAG-A-G---GG-ACCTGTAGACATAGATATAAC--AGAGACC 1269 Query 273 --AG-TTTTTCTACTCTGTTTTGATTTTACAGCAGAGAGATTTGGACCGCGTCTTCCTCT 329 || |||| ||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1270 GAAGACTTTT-TACTCTGTTTTGATTTTACTGCTGAGAGATTTGGACCGCGTCTTCCTCT 1328 Query 330 TCCGTTTCACTCTCATGATAACTCTCATGATGAAGAGATTGTGTCTCTATTC-TGTGTCA 388 ||| ||||||||| | || | || || |||| |||| ||||| || ||||| | Sbjct 1329 TCCTTTTCACTCT--T-AT---T-TC-----GACGAGACTGTGACTCTA-TCTTGTGTTA 1375 Query 389 AAGAGGAGCAGCTCGCTGTGTTACATCAAAACTT--TG-C---T-AGATGCTTGGAGATT 441 |||| || |||||| | | ||| | || ||| || | | |||| | |||||||| Sbjct 1376 AAGAAGATCAGCTCTCCATCTTATACCAGCCCTTGGTGCCATATGAGAT-CATGGAGATT 1434 Query 442 TGGATTACCACCAAGATCGAGCCTAGTGCGGTGTCTTGGAGCATGTTTTTGAAAGTGGAT 501 ||| || |||| || || ||||| | ||| ||||| |||||||||||||||||||||||| Sbjct 1435 TGGGTTTCCACTAATATTGAGCCCAATGCTGTGTCGTGGAGCATGTTTTTGAAAGTGGAT 1494 Query 502 ATGAGACCACTCACTGGCTTTAAGTGTCATGTTGAAG-CTGGGAGTTTCTTTGTTGACGA 560 ||||||||||||||||| ||| ||| | | ||| | | ||||||||||||| ||||| | Sbjct 1495 ATGAGACCACTCACTGGTTTTCAGTTTGACGTT-ATGGCTGGGAGTTTCTTCATTGACCA 1553 Query 561 GGAGAAGAAAGTCGCCATGGTTTTCGATCTAGACGGACGTAAA-AAGACCGAGACTTGCC 619 |||||| ||||||||| ||||||| ||||| ||| | | | || ||| ||| | | Sbjct 1554 GGAGAACAAAGTCGCCGTGGTTTTTGATCTTGACCCATATCCACAAT-CCGTGACCCGTC 1612 Query 620 GCTACCAGACAGCTCACATCATTGGACAAGATGG---ATACTTCAAATCTGT-GAATATC 675 ||||||| |||||| ||||||||||||||||||| ||||||||||||||| || |||| Sbjct 1613 GCTACCAAACAGCTTACATCATTGGACAAGATGGTGGATACTTCAAATCTGTTGA-TATC 1671 Query 676 CGAGAAGCAC-AGAATCTCGGGAAACCTGACATATTTGGATACACT--CCTTCCATTTAT 732 ||||||| | | ||| || || || ||||| | ||||| | | || |||| ||| Sbjct 1672 GGAGAAGCTCCA-AATATCATGACACGTGACAGCTACGGATATATTGGCC--CCATGTAT 1728 Query 733 TGTGTCCCACTTG 745 |||||||| |||| Sbjct 1729 TGTGTCCCGCTTG 1741 > Ahg478813 jgi|Araly1|478813|fgenesh2_kg.3__1514__AT3G14030.1 Length=672 Score = 294 bits (159), Expect = 5e-79 Identities = 197/215 (92%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 533 TTGAAGCTGGGAG-TTTCTTTGTTGACGAGGAGAAGAAAGTCGCCATGGTTTTCGATCTA 591 ||||| ||||||| ||||||| |||| || ||||||||||||||| |||||||||||||| Sbjct 418 TTGAAACTGGGAGTTTTCTTTATTGATGACGAGAAGAAAGTCGCCGTGGTTTTCGATCTA 477 Query 592 GACGGACGTAAAAAGACCGAGACTTGCCGCTACCAGACAGCTCACATCATTGGACAAGAT 651 |||||| |||||||||||||||||| |||||||| ||||||||||||||||||||| || Sbjct 478 GACGGATATAAAAAGACCGAGACTTGTCGCTACCAAACAGCTCACATCATTGGACAATAT 537 Query 652 GGATACTTCAAATCTGTGAATATCCGAGAAGCACAGAATCTCGGGAAACCTGACATATTT 711 |||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||| Sbjct 538 GGATACTTCAAATCTGTGAATATCCGAGAAGCTCCGAATCTCGGGAAACCTGACAGATTT 597 Query 712 GGATACACTC-CTTCCATTTATTGTGTCCCACTTG 745 |||| |||| || ||||||||||||||||||||| Sbjct 598 GGATTTACTCTCT-CCATTTATTGTGTCCCACTTG 631 Score = 263 bits (142), Expect = 1e-69 Identities = 211/242 (87%), Gaps = 14/242 (6%) Strand=Plus/Plus Query 259 ACAACGTATCTTCCAGTTTTTCTACTCTGTTTTGATTTTACAGCAGAGAGATTTGGACCG 318 ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 199 ACAACACATCTTCCCGTTTTTCTACTCTGTTTTGATTTTACAGCAGAGAGATTTGGACCG 258 Query 319 CGTCTTCCTCTTCCGTTTCACTCTCATGATAACTCTCATGATGAAGAGATTGTGTCTCTA 378 ||||||||||| ||| | | || ||||||||||||||||||||||||||||| Sbjct 259 CGTCTTCCTCTACCG--T---T-TC------ACTCTCATGATGAAGAGATTGTGTCTCTA 306 Query 379 TTCT-GTGTCAAAGAGGAGCAGCTCGCTGTGTTACATCAAAACTTTGCTAGATGCTTGGA 437 | || |||||||||| |||||||| ||||||||| ||||||||| ||||| ||||||||| Sbjct 307 T-CTTGTGTCAAAGAAGAGCAGCTAGCTGTGTTATATCAAAACTATGCTATATGCTTGGA 365 Query 438 GATTTGGATTACCACCAAGATCGAGCCTAGTGCGGTGTCTTGGAGCATGTTTTTGAAAGT 497 ||||||||||| || | ||||||||||| |||| |||||||||||| |||||||||| | Sbjct 366 CATTTGGATTACGACGATGATCGAGCCTACTGCGCTGTCTTGGAGCAAGTTTTTGAAACT 425 Query 498 GG 499 || Sbjct 426 GG 427 > Ahg951995 jgi|Araly1|951995|scaffold_28600002.1 Length=555 Score = 279 bits (151), Expect = 1e-74 Identities = 192/211 (91%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 539 CTGGGAG-TTTCTTTGTTGACGAGGAGAAGAAAGTCGCCATGGTTTTCGATCTAGACGGA 597 ||||||| ||||||| |||| || ||||||||||||||| |||||||||||||||||||| Sbjct 297 CTGGGAGTTTTCTTTATTGATGACGAGAAGAAAGTCGCCGTGGTTTTCGATCTAGACGGA 356 Query 598 CGTAAAAAGACCGAGACTTGCCGCTACCAGACAGCTCACATCATTGGACAAGATGGATAC 657 |||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||| Sbjct 357 TATAAAAAGACCGAGACTTGTCGCTACCAAACAGCTCACATCATTGGACAATATGGATAC 416 Query 658 TTCAAATCTGTGAATATCCGAGAAGCACAGAATCTCGGGAAACCTGAC-ATATTTGGATA 716 |||||||||||||||||||||||||| | ||||||||||||||||||| | |||||||| Sbjct 417 TTCAAATCTGTGAATATCCGAGAAGCTCCGAATCTCGGGAAACCTGACCAGATTTGGATT 476 Query 717 C-ACTC-CTTCCATTTATTGTGTCCCACTTG 745 |||| || ||||||||||||||||||||| Sbjct 477 TTACTCTCT-CCATTTATTGTGTCCCACTTG 506 Score = 156 bits (84), Expect = 3e-37 Identities = 133/154 (86%), Gaps = 14/154 (9%) Strand=Plus/Plus Query 249 CGACGTAGATACAACGTATCTTCCAGTTTTTCTACTCTGTTTTGATTTTACAGCAGAGAG 308 |||||||||||| || ||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 155 CGACGTAGATACCACACATCTTCCCGTTATTCTACTCTGTTTTGATTTTACAGCAGAGAG 214 Query 309 ATTTGGACCGCGTCTTCCTCTTCCGTTTCACTCTCATGATAACTCTCATGATGAAGAGAT 368 ||||||||||||||||||||| |||||||||||||||||| || | ||||| Sbjct 215 ATTTGGACCGCGTCTTCCTCTACCGTTTCACTCTCATGAT---------GA--A-GAGAT 262 Query 369 TGTGTCTCTATTCT-GTGTCAAAGAGGAGCAGCT 401 ||||||||||| || |||||||||| |||||||| Sbjct 263 TGTGTCTCTAT-CTTGTGTCAAAGAAGAGCAGCT 295 > Ahg929120 jgi|Araly1|929120|scaffold_301577.1 Length=1237 Score = 183 bits (99), Expect = 1e-45 Identities = 337/444 (76%), Gaps = 48/444 (11%) Strand=Plus/Plus Query 275 TTTTTCTACTCTGTTTTGATTTTAC-AGCAGAGAGATTTGGACCGCGTCTTCCTCTTCCG 333 ||||| || |||| ||||||||||| || ||||||||||||||||| ||| ||||| ||| Sbjct 677 TTTTT-TAGTCTGCTTTGATTTTACAAG-AGAGAGATTTGGACCGCTTCTCCCTCTGCCG 734 Query 334 TTTCACTCTCATGATAACTCTCATGATGAAGAGATTGTGTCTCTATTC-TGTGTCAAAGA 392 ||||||||| | | || | | | | | | ||||||||||| || ||||| | ||| Sbjct 735 TTTCACTCT--T-ACAA-TGT--T-A-G-ACTTTTTGTGTCTCTA-TCTTGTGTTAGAGA 784 Query 393 GGAGCAGCTCGCTGTGTTACATCAAAACTTTG---C-TA-GAT--G-C-TTGGAGATTTG 443 |||||||||||||||||| ||||| ||| | | || ||| | | | ||| |||| Sbjct 785 CGAGCAGCTCGCTGTGTTATATCAACGCTTGGACACATATGATGGGACAGTCGAGTTTTG 844 Query 444 -GATTACCA-CCAAGATCGAGCCTAGTGCGGTGTCTTGGAGCATGTTTTTGAAAGTGGAT 501 | ||| || ||||| || || | ||| ||||||||||||||||||||| || | Sbjct 845 TG-TTA-CAGATAAGATTGATCCCAATGCTGTGTCTTGGAGCATGTTTTTG-AA----AC 897 Query 502 ATGAGACCACTCACTGGCTTTA-AGTGT-CATGTTGAAGCTGGGAGTTTCTTT-GTTGAC 558 | || ||| ||| |||| || | | ||| ||||||||||| ||| | ||| Sbjct 898 A--AG-----TCATTGGTTTTACGGT-TAAACCTTG-TGCTGGGAGTTT-TTTCATCGAC 947 Query 559 GAGGAGAAGAAAGTCGCCATGGTTTTCGATCTAGACGGACGTAAAAAGACCGA-GACTTG 617 | ||||||||||||||| ||||||||||| |||| | | ||||||| | | || || Sbjct 948 CAAGAGAAGAAAGTCGCCGTGGTTTTCGATATAGATGTATATAAAAAGGTCAAGGA-ATG 1006 Query 618 CCGCTACCAGACAGCTCACATCATTGGACAAGATGGATACTTCAAATCTGTGAATATCCG 677 ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1007 TCGCTATCAAACAGCTTACATCATTGGACAAGATGGATACTTCAAATCTGTGAATATCGG 1066 Query 678 AGAAGCACAGAATCTCGGGA-AAC 700 | |||| | | ||||||||| ||| Sbjct 1067 ACAAGCTCGGGATCTCGGGAGAAC 1090 > Ahg929516 jgi|Araly1|929516|scaffold_301973.1 Length=1193 Score = 78.7 bits (42), Expect = 6e-14 Identities = 44/45 (98%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 540 TGGGAGTTTCTTTGTTGACGAGGAGAAGAAAGTCGCCATGGTTTT 584 ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 977 TGGGAGTTTCTTTGTTGACGAGGAGAAGAAAGTCGCCGTGGTTTT 1021 > Ahg929515 jgi|Araly1|929515|scaffold_301972.1 Length=943 Score = 75.0 bits (40), Expect = 7e-13 Identities = 117/152 (77%), Gaps = 14/152 (9%) Strand=Plus/Plus Query 434 TGGAGATTTGGATTACCACCAAGATCGAGCCTAGTGCGGTGT-CT--TGGAGCATGTT-T 489 ||||||| |||||||| || |||| ||||| | | ||||| | |||||| ||| | Sbjct 760 TGGAGATATGGATTACGACTGAGATTGAGCCCAAAGAGGTGTGGTGGGGGAGCAAGTTGT 819 Query 490 T-TGAA-AGTGGATATGAGA-CCACTCACTGGCTT-T-AAGTGTCATGTTGAAGC-TGGG 543 | | || ||| |||| | | ||||| ||| | || | || | ||| ||||| | |||| Sbjct 820 TCTTAACGGTGAATAT-AAATCCACTTACTTG-TTATCAATTCCCAT-TTGAA-CGTGGG 875 Query 544 AGTTTCTTTGTTGACGAGGAGAAGAAAGTCGC 575 |||||||||||||||||||||||||||||||| Sbjct 876 AGTTTCTTTGTTGACGAGGAGAAGAAAGTCGC 907 > Ahg480740 jgi|Araly1|480740|fgenesh2_kg.3__3441__AT2G18320.1 Length=1035 Score = 73.1 bits (39), Expect = 3e-12 Identities = 64/75 (85%), Gaps = 5/75 (7%) Strand=Plus/Plus Query 277 TTTC-TACTCTGTTTTGATTTTACAGCAGAGAGATTTGGACCGCGT-CTTCCTCTTCCGT 334 |||| || | ||||||||||||||||||||||||||||||| | || |||||||| || | Sbjct 660 TTTCTTAATATGTTTTGATTTTACAGCAGAGAGATTTGGACAG-GTTCTTCCTCTGCCAT 718 Query 335 TTCA-CTCTCATGAT 348 |||| | ||||||| Sbjct 719 TTCAGCA-TCATGAT 732 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27867852327 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5