BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14050.1
Length=2675
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929176 jgi|Araly1|929176|scaffold_301633.1 3448 0.0
Ahg923979 jgi|Araly1|923979|scaffold_105260.1 1722 0.0
> Ahg929176 jgi|Araly1|929176|scaffold_301633.1
Length=2187
Score = 3448 bits (1867), Expect = 0.0
Identities = 2088/2192 (95%), Gaps = 25/2192 (1%)
Strand=Plus/Plus
Query 379 AAAGCAGAACCAACGAGCTCCAATGGTGGTGGCGACGACTATAGCACTTTACGCGAGTCC 438
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1 AAACCAGAACCAACGAGCTCCAATGGTGGTGGCGACGACTATAGCGCTTTACGCGAGCCC 60
Query 439 ACCAAGCAGCGTTTGTTCCACGCCACATCAGATCTCATGTGATCTCGATCTCACCTCCAG 498
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 ACCAAGTAGCGTTTGTTCCACGCCACATCAGATCTCATGTGATCTCGATCTGACCTCCAG 120
Query 499 GAGTTCGTCAACATC-CTCTTCCATGGCTTCCTCGCCGCAGAAACCAATCGTTGGAGGTC 557
|||||||||||| || | ||||||||| |||||||||||||||||||||||| |||||||
Sbjct 121 GAGTTCGTCAACGTCAC-CTTCCATGGTTTCCTCGCCGCAGAAACCAATCGTCGGAGGTC 179
Query 558 TCTCTTCACTTTTCTCCAGCGCATCAGTCAAATCTTCATCTTCTTCCTCTTGCTCATACT 617
||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||
Sbjct 180 TCTCTTCACTTTTCTCCGGCGCATCCGTCAAATCTTCA---GCTTCCTCTTGCTCATACT 236
Query 618 CAACCGGAGTAGATGAGTTCTCTTCACTACGCTATGATCGGAGTGATGATTTGAAAGATC 677
||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||
Sbjct 237 CAACCGGAGTAGATGAGTTTTCTTCAGTACGCTATGATCGGAGTGATGATTTAAAAGATC 296
Query 678 TGAGCTTTAGCAGCTCCTTTGGTTATTCTCCGGCGAAATTTGTGAA---TTC--AT-TTA 731
||||||| |||||||||||| ||||||||||||||||||||||||| ||| || |||
Sbjct 297 TGAGCTTGAGCAGCTCCTTTTGTTATTCTCCGGCGAAATTTGTGAATTCTTCGTATCTTA 356
Query 732 GACGAGATCACCAAAGCCCTATCTCTGTGCTTCATGGTCCGGTCTCGTGTAGTTGTAGCC 791
||||||||| ||| || ||||||||||||||||| ||||| || || |||||||||||||
Sbjct 357 GACGAGATCTCCAGAGTCCTATCTCTGTGCTTCACGGTCCAGTTTCTTGTAGTTGTAGCC 416
Query 792 CTCCGATGAGAATGTCTCGTGATCGGAATCTAGATGGTTCGTTTCGTTTAGGAGCTAGTG 851
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 417 CTCCGATGAGAATGTCTCGTGATCGGAATCTCGATGGCTCGTTTCGTTTAGGAGCTAGTG 476
Query 852 GATTGTTCAATGGTTTCGTTAGGAAAGCTCTTGGATCATGTGTTGATTACGAGTTCGGAT 911
||||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||
Sbjct 477 GATTGTTCAATGGTTTCGTAAGGAAAGCTCTTGGATCATGTGTGGATTACGAATTGGGAT 536
Query 912 CGGATTCTGTTCTCGTTGATGAGCTAACGTTTCCTAT---GGA---------GGTTGATA 959
||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 537 CGGATTCTGTTCTCGTTGATGAGCTAACGTTTCCTATGGAGGATGGTTTTGGGGTTGATA 596
Query 960 CGATAAAGCCATATGCTAGGGATTTGCTAAGACGTGCACAATTGAGACACAAGAT-TTTC 1018
||| |||||||||||||||||||||| |||||||||| |||||||||||||| || |||
Sbjct 597 CGAGAAAGCCATATGCTAGGGATTTGTTAAGACGTGCTCAATTGAGACACAAAATCTTTG 656
Query 1019 AATGATGAATCTGTGATCAAAGCTTTTTATGAAGCAGAGAAAGCTCATAGAGGACAAATG 1078
|| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 657 AA-GATGAGTCTGTGATCAAAGCATTTTATGAAGCAGAGAAAGCTCATAGAGGACAGATG 715
Query 1079 AGAGCTAGTCGTGATCCTTACCTTCAGCATTGTGTTGAGACTGCTATGTTGTTGGCTAAT 1138
||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 716 AGAGCTAGTGGTGATCCTTACCTTCAACATTGTGTTGACACTGCTATGTTGTTGGCTAAT 775
Query 1139 ATCGGAGCTAACTCAACTGTTGTTGTTGCTGGCCTTCTTCATGATACCATTGACGATTCT 1198
|||||||||||||| ||||||||||||||||| |||||||||||||| || || |||||
Sbjct 776 ATCGGAGCTAACTCGACTGTTGTTGTTGCTGGGCTTCTTCATGATACTATGGATGATTCA 835
Query 1199 TTCATGAGCTATGATTATATTCTCAGAAACTTCGGAGCAGGAGTTGCTGATTTGGTTGAA 1258
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 836 TTCATGAGCTATGATTATATTCTCAGAAACTTTGGAGCAGGAGTGGCTGATTTGGTCGAA 895
Query 1259 GGGGTTTCGAAGCTTAGCCAATTGAGCAAACTCGCTAGAGAGAACAATACGGCGTGTAAA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GGGGTTTCGAAGCTTAGCCAATTGAGCAAACTCGCTAGAGAGAACAATACGGCGTGTAAA 955
Query 1319 ACTGTTGAAGCAGATCGTTTGCACACAATGTTTCTTGCAATGGCAGATGCAAGAGCTGTT 1378
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 ACTGTTGAAGCAGATCGATTGCACACAATGTTTCTTGCAATGGCAGATGCAAGAGCTGTT 1015
Query 1379 CTTATAAAACTGGCTGATCGATTACACAACATGAAGACGCTTTACGCTTTGTCCCCAGTG 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CTTATAAAACTGGCTGATCGATTACACAACATGAAGACGCTTTACGCTTTGTCCCCAGTG 1075
Query 1439 AAGCAGCAGAGGTTTGCTAAAGAGACGTTGGAAATATTTGCACCTTTGGCTAATCGTTTG 1498
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1076 AAGCAGCAGAGGTTTGCTAAAGAGACGTTGGAAATATTCGCACCCTTGGCTAATCGTTTG 1135
Query 1499 GGAATCTCTACCTGGAAAGTTCAGCTTGAAAATCTTTGTTTCAAACATCTTTACCCAAAC 1558
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1136 GGAATCTCTACCTGGAAAGTTCAGCTTGAAAATCTTTGTTTCAAGTATCTTTACCCAAAC 1195
Query 1559 CAGCATAATGAGATGTCAACCATGCTCGAGGATTCATTCGATGAAGCCATGATTACTTCT 1618
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1196 CAGCATAATGAGATGTCAACCATGCTTGAGGATTCATTCGATGAAGCCATGATTACTTCT 1255
Query 1619 GCAATAGAGAAATTGGAGCAAGCTCTTAAGAAAGCAGGCATTTCTTATCATGTTCTTTGT 1678
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1256 GCAATAGAGAAATTGGAGCAAGCTCTTAAGAAAGAAGGCATTTCTTATCATGTTCTGTGT 1315
Query 1679 GGCCGGCACAAGAGCTTGTATAGTATTTACAGCAAGATGTTAAAGAAAAAGCTAACAGTG 1738
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1316 GGCCGGCACAAGAGCTTGTATAGTATTTACAGCAAGATGTTGAAGAAAAAGCTAACAGTG 1375
Query 1739 GATGAAATTCATGACATTCATGGGTTACGTTTGATTGTTGACAACGAAGGAGATTGTTAC 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 GATGAAATTCATGACATTCATGGGTTACGTTTGATTGTTGACAACGAAGGAGATTGTTAC 1435
Query 1799 AAGGCCTTAGGAGTAGTTCATAGTTTATGGTCTGAAGTTCCTGGAAAGCTGAAGGATTAC 1858
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1436 AAGGCCTTAGGAGTAGTTCATAGCTTATGGTCTGAAGTTCCTGGAAAGCTGAAGGATTAC 1495
Query 1859 ATAACTCATCCCAAATTCAACGGGTATCAATCTTTGCACACGGTAGTGATGGACAATGGA 1918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 ATAACTCATCCCAAATTCAACGGGTATCAATCTTTGCACACGGTAGTGATGGACAATGGA 1555
Query 1919 ACAGTTCCACTTGAAGTCCAAATACGTACACAGGAGATGCATTTGCAAGCAGAATTTGGG 1978
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 ACAGTCCCACTTGAAGTCCAAATACGTACACAGGAGATGCATTTGCAAGCAGAATTTGGG 1615
Query 1979 TTTGCAGCTCATTGGAGATACAAGGAAGGTGGCTGCAAATACTCTTCGTTTGTGCTTCAG 2038
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1616 TTTGCAGCTCATTGGAGGTACAAGGAAGGTGACTGCAAATACTCTTCGTTTGTGCTTCAG 1675
Query 2039 ATGGTTGAATGGGCTCGGTGGGTCGTAACCTGGCATTGCGAAGCAATGAGCAAAGACCGA 2098
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1676 ATGGTTGAATGGGCTCGGTGGGTCGTAACATGGCATTGCGAAGCAATGAGCAAAGACCGA 1735
Query 2099 TCTTCCATAAGTTCTTCAGATTCCATCAAACCCCCTTGCAAGTTTCCGTCTCACTCTGAG 2158
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1736 TCTTCCATAAGTTCTTCTGATTCCATAAAACCCCCTTGCAAGTTTCCGTCTCACTCCGAG 1795
Query 2159 GACTGCCCAGCTTCTTACAAGCCTAACAGTAGCCAGGATGGACCAGTCTATGTCATTGTA 2218
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1796 GACTGCCCGGCTTCTTACAAGCCTAACAGTAGCCAGGACGGACCAGTCTATGTCATCGTG 1855
Query 2219 ATCGAAAATGATAAGATGTCTGTGCAAGAATTTCCAGCGAGTTCAACAGTCTCGGATCTG 2278
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1856 ATCGAAAATGACAAGATGTCTGTGCAAGAATTTCCAGCGAGTTCTACAGTTTCGGATCTG 1915
Query 2279 CTGAGCCGGGCGGGGCCAGGGAGCTCGAGGTGGTCCATGTATGGCATACCAGCAAAGGAA 2338
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 CTAAGCCGGGCGGGGCCAGGGAGCTCGAGGTGGTCCATGTATGGCATACCAGCAAAGGAA 1975
Query 2339 GAACTAAGGCCAAGACTGAACCAAATACCTGTAAGTGACCTCAAGTGGAAGCTGAAGATG 2398
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1976 GAACTAAGGCCAAGGCTGAACCAAAGACCTGTAAGTGACCTCAAGTGGAAGCTGAAGATG 2035
Query 2399 GGTGATGTGGTGGAGCTGACTCCAACAATTCCTGATGAGTCTCTGACTGAATACAGAGAA 2458
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2036 GGTGATGTGGTGGAGCTGACTCCAACAATTCCTGACGAGTCTCTGACTGAATACAGAGAA 2095
Query 2459 GAGATTCAACGCATGTATGATCGAGGACTCGCGTTTTCCCGCCCCGGAACCATGGTCGGA 2518
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2096 GAGATTCAACGGATGTATGATCGAGGACTCGCGTTTTCCCGCCCCGGAACCATGGTCGGA 2155
Query 2519 TGGGGAAGCTGATGGGTCCTCAAATTGTTAAC 2550
|||||||||||||||||||||| |||||||||
Sbjct 2156 TGGGGAAGCTGATGGGTCCTCATATTGTTAAC 2187
> Ahg923979 jgi|Araly1|923979|scaffold_105260.1
Length=2194
Score = 1722 bits (932), Expect = 0.0
Identities = 1782/2173 (82%), Gaps = 135/2173 (6%)
Strand=Plus/Plus
Query 399 CAATGGTGGTGGCGACGACTATAGCACTTTACGCGAGTCCACCAAGCAGC-GTTTGTTCC 457
|||||||||| || ||||| ||||| ||||||||||||||| | |||| | || ||||||
Sbjct 23 CAATGGTGGTAGCAACGACCATAGCGCTTTACGCGAGTCCAGCGAGCA-CTGTATGTTCC 81
Query 458 AC-GC-CA-C--ATC-A-G-----ATCTCATGTGATCTCGATCTCACCTCCAGGA-GTTC 504
|| || || | ||| | | ||||| |||||||||||||| | ||| | || |||
Sbjct 82 ACAGCTCACCAGATCAACGCTCATATCTCTTGTGATCTCGATCTGAACTCTA-GATCTTC 140
Query 505 GTCAACATCCTCTTCCATG-GCTTCCTCGCCGCAGAAACCAATCGTTGGAGGTCTCTCTT 563
|| | || ||||| | | | || || | | | | | ||| |||||||||||||
Sbjct 141 ATCGGCGTCTTCTTCGACGAG-TT-CT---C-C-G--A-CTATC---GGAGGTCTCTCTT 187
Query 564 CACTTTTCTCCAGCGCATCAGTCAAATC-T--TCATCTTCTTCCTCTTGCTCATACTCAA 620
||||||||| |||| || |||||||| | || ||||||||||| | | ||| | |||
Sbjct 188 TGCTTTTCTCCGGCGCTTCCGTCAAATCATCGTCGTCTTCTTCCTCAT-CGCAT-C-CAA 244
Query 621 CCGG-AGTAGATGAGTTCTCTTCACTACGCT-ATGATCGGAGTGATGATTTGAAAGATCT 678
||| || ||| || || ||||| |||| | |||||| || | | | | ||||
Sbjct 245 -CGGTAGGAGAGGAATTAGCTTCAATACG-TCATGATC-GA---A-G---CG-AGGATC- 292
Query 679 GAGCTTT-AGCAGCTCCTTTG-GTTATTCTCCG-GCGAAATT--T--GTGAATTC--AT- 728
|| |||| ||| ||||| ||| ||||||||||| || ||||| | || ||| ||
Sbjct 293 GAACTTTAAGCGGCTCC-TTGTGTTATTCTCCGAGC-AAATTCATCGGT-TCTTCATATC 349
Query 729 TTAGACGAGATCACCAAAGCCCTATCTCTGTGCTTCAT-GGTCCGGTCTCGTGTAGTTGT 787
||| ||||||||||||||||||| |||| ||||||| | ||||| | || | | || |
Sbjct 350 TTAAACGAGATCACCAAAGCCCTGTCTCGGTGCTTC-TCGGTCCAATTTCATCTGGTAGC 408
Query 788 AGCCCTCCGATGAGAATGTCTCGTGATCGGAATC-TAGATGGT---TC--GT-TTCGTTT 840
|| |||||||||||||| || || |||||||| | |||||||| || | ||||| |
Sbjct 409 AGTCCTCCGATGAGAATTTCACGCGATCGGAA-CTTAGATGGTGGATCTTCTCTTCGTGT 467
Query 841 AGGAGCTAGTGGATTGTTCAATGGTTTCGTTAGGAAAGCTCTTGGATCATGTGTTGATTA 900
|||| |||| ||||||||||||||||||| |||||||| | || || |||||||||||
Sbjct 468 AGGATCTAGCAGATTGTTCAATGGTTTCGTCAGGAAAGCGATAGGTTCTTGTGTTGATTA 527
Query 901 CGAGTTCGGA-TCGGATTCTGTTCTCGTTGATG-AGCTAACGTTT-CCTAT-G--GA-GG 953
||| | | || || | ||| || ||| ||| | ||||| ||||| || || | || ||
Sbjct 528 CGA-TACAGACTCTG-TTC--TTGTCGATGA-GCAGCTACCGTTTACC-ATGGACGATGG 581
Query 954 TT--G-A-TACGATA-AAG----CCATATGCTAGGGATTTGCTAAGACGTGCACAATTGA 1004
|| | | | || | ||| |||||||||||||||||||| || ||||| |||||||
Sbjct 582 TTACGAAGGA-GAAAGAAGACATCCATATGCTAGGGATTTGCTTAGGCGTGCTCAATTGA 640
Query 1005 GACACAAGATTTTC-AATGATGAATCTGTGATCAAAGCTTTTTATGAAGCAGAGAAAGCT 1063
||| || || ||| || |||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 641 AACATAAAATCTTCGAA-GATGAATCTGTGATCAAAGCATTTTACGAAGCTGAGAAAGCT 699
Query 1064 CATAGAGGACAAATGAGAGCTAGTCGTGATCCTTACCTTCAGCATTGTGTTGAGACTGCT 1123
||||||||||| |||||||| | | ||||||||||||| || |||||||||||||||||
Sbjct 700 CATAGAGGACAGATGAGAGCAAATGGTGATCCTTACCTGCAACATTGTGTTGAGACTGCG 759
Query 1124 ATGTTGTTGGCTAATATCGGAGCTAACTCAACTGTTGTTGTTGCTGGCCTTCTT-CATGA 1182
|||||||| ||| | || |||||||| || ||||||||||| ||||| || || |||||
Sbjct 760 ATGTTGTTAGCTGACATTGGAGCTAATTCGACTGTTGTTGTAGCTGGAATT-TTACATGA 818
Query 1183 TACCATT-GACGATTC-TTTCATGAGCTATGATTATATTCTCAGAAAC-TTCGGAGCAGG 1239
|| | || |||||||| ||| ||||||||||||||||||||||| ||| || ||| ||||
Sbjct 819 TA-CTTTAGACGATTCGTTT-ATGAGCTATGATTATATTCTCAG-AACTTTTGGATCAGG 875
Query 1240 AGTTGCTGAT-TTGGTTGAAGGGGTTTCGAAGCTTAGCCAATTGAGCAAACTCGCTAGAG 1298
|||||||||| || || |||||||| || |||||||||||||| || ||||| ||| | |
Sbjct 876 AGTTGCTGATCTT-GTGGAAGGGGTGTCTAAGCTTAGCCAATTAAGTAAACTTGCTCGGG 934
Query 1299 AGAACAATACGGCGTGTAAAACTGTTGAAGCAGATCGTTTGCACACAATGTTTCTTGCAA 1358
| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 935 AAAACAATACGGCTTGTAAAACCGTTGAAGCAGATCGTTTGCACACTATGTTTCTTGCAA 994
Query 1359 TGGCAGATGCAAGAGCTGTTCTTATAAAACTGGCTGATCGATTACACAACATGAAGACGC 1418
|||||||||| ||||||||||||||||| | |||||||| ||||||||||||| ||| |
Sbjct 995 TGGCAGATGCGAGAGCTGTTCTTATAAAGTTAGCTGATCGGTTACACAACATGATGACTC 1054
Query 1419 TTTACGCTTTGTCC-CCAGTGAAGCAGCAGAGGTTTGCTAAAGAGACGT-TGGAAATATT 1476
| || |||||| || |||||||||||||| ||||||||||||||||| | | || |||||
Sbjct 1055 TCTATGCTTTG-CCACCAGTGAAGCAGCAAAGGTTTGCTAAAGAGAC-TCTCGAGATATT 1112
Query 1477 TGCACCTTTGGCTAATCGTTTGGGAATCTCTACCTGGAAAGTTCAGCTTGAAAATCTTTG 1536
||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| | ||
Sbjct 1113 TGCGCCTTTGGCTAATCGTTTGGGAATCTCTAGCTGGAAAGTTGAGCTTGAAAATATGTG 1172
Query 1537 TTTCAAACATCTTTACCCAAACCAGCATAATGAGATGTCA-ACCATGCTCGAGGATTCAT 1595
|||||| ||||| || || | ||||| |||||||||| | ||||| ||||||||||
Sbjct 1173 TTTCAAGCATCTCTATCCTGATCAGCACCATGAGATGTCTGAT-ATGCTTGAGGATTCAT 1231
Query 1596 TCGATGAAGCCATGATTACTTCTGCAATAGAGAAATTGGAGCAAGCTCTTAAGAAAGCAG 1655
|| ||||||| ||||||||||| || || | ||||||||||||||| |||||||||| ||
Sbjct 1232 TCAATGAAGCTATGATTACTTCCGCGATTGGGAAATTGGAGCAAGCGCTTAAGAAAGAAG 1291
Query 1656 GCATTTCTTATCATGTTCTTTGTGGCCGGCACAAGAGCTTGTATAGTATTTACAGCAAGA 1715
|||||||||| |||||||| | ||| || |||||||||||||||||||| ||| ||||||
Sbjct 1292 GCATTTCTTACCATGTTCTATCTGGACGACACAAGAGCTTGTATAGTATCTACTGCAAGA 1351
Query 1716 TGTTAAAGAAAAAGCTAAC-AGTGGATGAAATTCATGACATTCATGGGTTACGTTTGATT 1774
|||| |||||||||||||| | |||||||||| ||||| |||||||| ||||||||||||
Sbjct 1352 TGTTGAAGAAAAAGCTAACCA-TGGATGAAATCCATGATATTCATGGCTTACGTTTGATT 1410
Query 1775 GTTGACAACGAAGGA-GATTGTTACAAGGCCTTAGGAGTAGTTCATA-GTTTATGGTCTG 1832
|||||||| || | | ||||||||||||||||||||||||||||| | | | ||||||||
Sbjct 1411 GTTGACAATGA-GAAAGATTGTTACAAGGCCTTAGGAGTAGTTCACAAGCT-ATGGTCTG 1468
Query 1833 AAGTTCCTGGAAAGCTGAAGGATTACATAACTCATCCCAAATTCAACGGGTATCAATCTT 1892
||||||||||||||||||| |||||||| |||||||||| ||||||||||| |||||||
Sbjct 1469 AAGTTCCTGGAAAGCTGAAAGATTACATTTCTCATCCCAAGTTCAACGGGTACCAATCTT 1528
Query 1893 TGCACACGGTAGTGATGGACAATGGAAC-AGTTCCACTTGAAGTCCAAATACGTACACAG 1951
|||| || ||||| |||| ||||||| | |||| |||||||| |||||||| ||| ||
Sbjct 1529 TGCATACTGTAGTAATGGGTGATGGAACTA-TTCCGCTTGAAGTTCAAATACGAACAAAG 1587
Query 1952 GAGATGCATTTGCAAGCAGAATTTGGGTTTGCAGCTCATTGGAGATACAAGGAAGGTGGC 2011
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1588 GAGATGCATTTGCAAGCTGAATTTGGGTTTGCAGCTCACTGGAGATACAAGGAAGGTGAC 1647
Query 2012 TGCAAATACTCTTCGTTTGTGCTTCAGATGGTTGAATGGGCTCGGTGGGTCGTAACCTGG 2071
||||| | || || |||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 1648 TGCAAGCATTCATCATTTGTGCTTCAGATGGTTGAATGGGCAAGATGGGTCGTGACCTGG 1707
Query 2072 CATTGCGAAGCAATGAGCAAAGACCGATCTTCCATAAGTTCTTCAGATTCCATCAAACCC 2131
|||| |||| | ||||||||||| |||| || || | ||||| || || | |
Sbjct 1708 CATTTCGAAACCATGAGCAAAGATAGATCCTCGATCTGCTCTTCCGAG-CCTTTA----- 1761
Query 2132 CCTTGCAAGTTTCC-GTCTCACTCTGAGGACTGCCCAGCTT-CTTACAAGCCTAACAGTA 2189
| ||| |||||| ||||||| |||| ||||| || | || | || |||||||| |||
Sbjct 1762 --T-GCA-GTTTCCCGTCTCACGCTGAAGACTGTCC-GTTTTCATATAAGCCTAATGGTA 1816
Query 2190 GCCAGGATGGACCAGTCTATGTCATTGTAATCGAAAATGATAAGATGTCTGTGCAAGAAT 2249
||| || |||||||||||||||||||||||||||||||| |||||| |||||||||| |
Sbjct 1817 ACCAAGAAGGACCAGTCTATGTCATTGTAATCGAAAATGAGAAGATGACTGTGCAAGAGT 1876
Query 2250 TTCCAGCGAGTTCAACAGTCTCGGATCTGCTGAGCCGGGCGGGGCCAGGGAGCTCGAGGT 2309
|||| |||| ||| ||||||||||| ||| | ||| | || || |||||||||||||| |
Sbjct 1877 TTCCCGCGAATTCCACAGTCTCGGACCTGTTAAGCAGAGCAGGACCAGGGAGCTCGAGAT 1936
Query 2310 GGTCCATGTATGGCATACCAGCAAAGGAAGAACTAAGGCCAAGACTGAACCAAATACCTG 2369
|||| ||||| |||| || ||||||||||| |||||||||||||| ||||| | |||||
Sbjct 1937 GGTCAATGTACAGCATCCCGGCAAAGGAAGAGCTAAGGCCAAGACTAAACCAGACACCTG 1996
Query 2370 TAAGTGACCTCAAGTGGAAGCTGAAGATGGGTGATGTGGTGGAGCTGACTCCAACAATTC 2429
||| ||| || || || |||||||||||||| ||||||||||||||||||||| | || |
Sbjct 1997 TAAATGATCTGAAATGCAAGCTGAAGATGGGAGATGTGGTGGAGCTGACTCCAGCTATAC 2056
Query 2430 CTGATGAGTCTCTGACTGAATACAGAGAAGAGATTCAACGCATGTATGATCGAGGACTCG 2489
|||| |||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 2057 CTGACAAGTCTCTGACTGAATACAGAGAAGAGATTCAACGAATGTATGATCGAGGGCTTG 2116
Query 2490 CGTTTTCCCGCCC 2502
||||||| |||||
Sbjct 2117 CGTTTTCACGCCC 2129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100901059005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5